BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17695.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493108 jgi|Araly1|493108|fgenesh2_kg.7__2541__AT4G17695.1 1552 0.0
Ahg473414 jgi|Araly1|473414|fgenesh2_kg.1__3368__AT1G32240.1 54.7 1e-06
> Ahg493108 jgi|Araly1|493108|fgenesh2_kg.7__2541__AT4G17695.1
Length=1059
Score = 1552 bits (840), Expect = 0.0
Identities = 954/1008 (95%), Gaps = 11/1008 (1%)
Strand=Plus/Plus
Query 1 CTTCTTATGGAGCTTTTCCCTTCACAACCTGACTTGTACTTGAAGATCAGCCgaagaaga 60
||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1 CTTGTTATGGAGCTTTTCCCTTCACAACCTGACTTGTACTTAAAGATCAGCCAAAGAAGA 60
Query 61 gaagaagaacaagaaaaagaaagtcaagaactacaagaacaagaagtcgaaagGAGATTA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAAGAACAAGAAAAAGAAAATCAAGAACTACAAGAACAAGAAGTCGAAAGGAGATTA 120
Query 121 GGGTTTCAGAGTAAAGCCTCAGATTTAGACA-ACAAGTCTTCAAATAATCTCATCCACAC 179
||||||||||||||||||||||||| || | | |||||||| ||||||||||||||||
Sbjct 121 GGGTTTCAGAGTAAAGCCTCAGATTCGGATAGA-AAGTCTTCTGATAATCTCATCCACAC 179
Query 180 TCTCCAGTTCACTTCAAACAATGAAGCCACCAAGATTAATAGTAATCAAGAACACAAGGA 239
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TCACCAATTCACTTCAAACAATGAAGCCACCAAGATTAATAATAATCAAGAACACAAGGA 239
Query 240 ATCTCTCGATCAAGACTTGAGATCTATTTTTATGATGAGACCAATAAGAGGAATCCCTCT 299
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 ATCTCTCGATCAAGACTTGAGATCTATGTTGATGATGAGACCAATAAGAGGAATCCCTCT 299
Query 300 TTACCAGAATCAAGTCCTTGACCACTACTACTACTCATCTACCTCTCCCAATCCTTTCTT 359
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 300 TTACCAGAATCAAGTCCTTGACCACTACTACTACTCATCTTCCTCTCCCACTCCTTTCTT 359
Query 360 CTTCAGTGAAGTCAACGGTCAACATGCTAGTCGTCGCTTAATCACAAACCCTAATTGTAG 419
|||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct 360 CTTCAGTGAAGTCAACGGTCAACACGCTAGTAGTCGTTTAATCACAAACCCTAATTGTAG 419
Query 420 TTTTAATCTCCACAACCGTCATCGGCGTCAAGCTCAACCGCAGCCGCCAAGATTCACCGC 479
||||||| | ||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 420 TTTTAATTTTCACCACCGTCATCGGCGTCAAGCTCAACCGCAGCCGCCTAGATTCACGGC 479
Query 480 CAAAAGAGGAGTAAGGGCTCCAAGGATGCGGTGGACGACGACCCTCCACGCCCATTTTGT 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAACGAGGAGTAAGGGCTCCAAGGATGCGGTGGACGACGACCCTCCACGCCCATTTTGT 539
Query 540 ACACGCTGTTCAATTATTGGGTGGTCATGAAAGAGCAACCCCAAAATCAGTACTTGAGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACACGCTGTTCAATTATTGGGTGGTCATGAAAGAGCAACCCCAAAATCAGTACTTGAGCT 599
Query 600 GATGGATGTGCAAGATCTCACATTGGCTCATGTTAAATCCCATCTACAGATGTATCGAAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GATGGATGTGCAAGATCTCACATTGGCTCATGTTAAATCCCATCTACAGATGTATCGGAC 659
Query 660 CATCAAGTCTACTGAAAAACCTACAACGTCATCAGGGCAGTCAGA---TTGTGAGAATGG 716
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 660 CATCAAGTCTACTGAAAAACCTACAACGTCATCAGGGCATTCAGACACTTGTGAGAATGG 719
Query 717 ATCACAAGTAAACAGTGAGAGAGAAGCAAGAAATCTC-ACGGGTCTATGGAATAACTCCT 775
|||||| || ||||||||||||||| ||||||||||| | || ||||||||| ||||| |
Sbjct 720 ATCACAGGTTAACAGTGAGAGAGAATCAAGAAATCTCCAAGG-TCTATGGAACAACTCAT 778
Query 776 CAAGTGAAGCTCGGTTCCAGTTGAAGGCAAAGGCATCATCAGGTGTAGACATTTCATCCA 835
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 779 CAAGTGAAGCTCGGTTCCATTTAAAGGCAAAGGCATCATCAGCTGTAGACATTTCATCCA 838
Query 836 ATGAGAATGAATGGAAGAATCGAAGATGTCCAAGCAACGAACGGTTGTCGTCAGATTCGT 895
||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||
Sbjct 839 ATGAGAATGAATGGAAGAATCAAAGATGTCCAAGCAACGAACGATTGTCATCGGATTCGT 898
Query 896 CAAGCCTTACAGGGACAAGACCAGAGACTGAAACTCCCAATCTTG-ATTTCACTTTAGCT 954
||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 899 CAAGCCTCACAGGGACAAGACCAGAGACTGAAACTCCCAAT-TTGGATTTCACTTTAGCT 957
Query 955 ACACCAAACCTCTCTCCCTAATTTTCTTATATATACTAAAAATACATA 1002
||||||||||||||||||||| ||||||||||||| ||||||| |||
Sbjct 958 ACACCAAACCTCTCTCCCTAAATTTCTTATATATA--AAAAATATATA 1003
> Ahg473414 jgi|Araly1|473414|fgenesh2_kg.1__3368__AT1G32240.1
Length=1550
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 277 AGACCAATAAGAGGAATCCCTCTTTACCA 305
|||||||||||||||||||||||||||||
Sbjct 637 AGACCAATAAGAGGAATCCCTCTTTACCA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5