BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17700.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354984 jgi|Araly1|354984|fgenesh1_pg.C_scaffold_7002157 300 1e-80
Ahg336537 jgi|Araly1|336537|fgenesh1_pg.C_scaffold_1003102 130 2e-29
Ahg913311 jgi|Araly1|913311|Al_scaffold_0001_3565 113 2e-24
Ahg336539 jgi|Araly1|336539|fgenesh1_pg.C_scaffold_1003104 106 3e-22
> Ahg354984 jgi|Araly1|354984|fgenesh1_pg.C_scaffold_7002157
Length=372
Score = 300 bits (162), Expect = 1e-80
Identities = 192/207 (93%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 629 GTAGCGATAGAAACTAAAGATAATATGGAGCCGCCAAGTGAGAGACTCAAGGCCAGGAAT 688
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 157 GTAGCAATAGAAACTAAAGAAAATATGGAGCCGTCAAGTGAGAGACTCAAGGCCAGGAAT 216
Query 689 GCATTTTTCTACATAAAGTACAAGTACCACGCGAATAAAGGACGGGGTCCTAAGCGTCGT 748
| |||||||||||||||||||||||||||||||||| | ||||| | ||| ||||||| |
Sbjct 217 GTATTTTTCTACATAAAGTACAAGTACCACGCGAATCAGGGACGAGATCCCAAGCGTCAT 276
Query 749 CTTGGTCATAAGACTCCTGATCGCATAGCTATAGTAAGAAGAACCTTAGACAAGAATACA 808
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 277 CTTGGTCACAAGACTCGTGATCGCATAGCTATAGTAAGAAGAGCCTTAGACAAGAATACG 336
Query 809 GGATACCTCACTCTCGAGTTCCCAGAG 835
||| |||||||||||||||||||||||
Sbjct 337 GGACACCTCACTCTCGAGTTCCCAGAG 363
Score = 147 bits (79), Expect = 2e-34
Identities = 113/129 (88%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 385 GAAAACGCTGCGTTGCCACGGCATTCTGTGGATCTTGAACCGGTAGATGTATTCTACAAA 444
|||||| ||| ||||||||| || || |||| |||||||||||||||||||||||||||
Sbjct 22 GAAAACCCTGTGTTGCCACGACAACCTTTGGAACTTGAACCGGTAGATGTATTCTACAAA 81
Query 445 GGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAAACGATTTTA 504
|||||||||| ||||||||| | ||||||||||||||||||||||| | | | ||||||
Sbjct 82 GGTAGTTTGCATGAGTGGCCGCAAGAGGATGCTTTCAATGATAATA-A-ACA--ATTTTA 137
Query 505 CGTGGTGAA 513
|||| ||||
Sbjct 138 CGTGCTGAA 146
> Ahg336537 jgi|Araly1|336537|fgenesh1_pg.C_scaffold_1003102
Length=894
Score = 130 bits (70), Expect = 2e-29
Identities = 212/277 (77%), Gaps = 23/277 (8%)
Strand=Plus/Plus
Query 436 TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA 495
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 514 TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA 570
Query 496 ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAA-CACATGACTGGATTCGTTTATACA 554
| ||| |||||||||| |||||||| ||| || ||| ||| |||||| | | ||
Sbjct 571 TGGGTTT-ACGTGGTGAATGAATCAGAGTTGCAAAACAC-TGATTGGATTTATCTGTATT 628
Query 555 TGGAACTTG-C-TTTCCTAAAAGCGCATTTG-AGATCGCCTAAAAATCCGAATCTATCTA 611
||||||||| | ||| | | || ||| | |||| | | | | || |||||| |
Sbjct 629 TGGAACTTGTCATTTGTTCAC-GC-CATAGGGAGATTTC--AGATGGC-GA-TCTATCCA 682
Query 612 AGTTGGTGATTGTCA-TGGTAGCGATAGAAACTAAAGAT-AATATGGAGCCGCC-AAGTG 668
||||| |||||| | || | ||||||||||||| || || |||||||||| || ||
Sbjct 683 AGTTGAAGATTGTGAATG-TGGCGATAGAAACTAGTGAAGAAG-TGGAGCCGCCTAA-TG 739
Query 669 AGAGACTCAAGGCCAGGA-ATGCATTTTTCTACATAA 704
|| ||||||| |||| | |||||||| |||||||||
Sbjct 740 AGCGACTCAACGCCAA-ACATGCATTTGTCTACATAA 775
> Ahg913311 jgi|Araly1|913311|Al_scaffold_0001_3565
Length=888
Score = 113 bits (61), Expect = 2e-24
Identities = 210/278 (76%), Gaps = 25/278 (9%)
Strand=Plus/Plus
Query 436 TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA 495
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 508 TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA 564
Query 496 ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAA-CACATGACTGGATTCGTTTATACA 554
||| |||| |||||||| |||||||| ||| || ||| ||| |||||| | | ||
Sbjct 565 -CGAGTTTATGTGGTGAATGAATCAGAGTTGCAAAACAC-TGATTGGATTTATCTGTATT 622
Query 555 TGGAACTTG-C-TTTCCTAAAAGCGCATTTG-AGATCGCCTAAAAATCCGAATCTATCTA 611
||||||||| | ||| | | || ||| | |||| | | | | || ||| || |
Sbjct 623 TGGAACTTGTCATTTGTTCAC-GC-CATAGGCAGATTTC--AGATGGC-GA-TCTGTCCA 676
Query 612 AGTTGGTGATTGTCA-TGGTAGCGATAGAAACTAAAGAT-AATATGGAGCCGCC-AAGTG 668
|| || |||||| | || | ||||||||||||| || || |||||||||| || ||
Sbjct 677 AGCTGAAGATTGTGAATG-TGGCGATAGAAACTATTGAAGAAG-TGGAGCCGCCGAA-TG 733
Query 669 AGAGACTCAAGGCCAGGAA--TGCATTTTTCTACATAA 704
||||||| || |||| || |||| || |||||||||
Sbjct 734 AGAGACTTAACGCCA--AACGTGCAATTGTCTACATAA 769
> Ahg336539 jgi|Araly1|336539|fgenesh1_pg.C_scaffold_1003104
Length=735
Score = 106 bits (57), Expect = 3e-22
Identities = 106/129 (82%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 436 TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA 495
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 547 TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA 603
Query 496 ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAA-CACATGACTGGATTCGTTTATACA 554
| ||| |||||||||| |||||||| ||| || ||| ||| |||||| | | ||
Sbjct 604 TGGGTTT-ACGTGGTGAATGAATCAGAGTTGCAAAACAC-TGATTGGATTTATCTGTATT 661
Query 555 TGGAACTTG 563
|||||||||
Sbjct 662 TGGAACTTG 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5