BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17713.1
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329757 jgi|Araly1|329757|fgenesh1_pm.C_scaffold_7001984 350 4e-96
> Ahg329757 jgi|Araly1|329757|fgenesh1_pm.C_scaffold_7001984
Length=288
Score = 350 bits (189), Expect = 4e-96
Identities = 268/303 (88%), Gaps = 18/303 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGCAGCTTTGATATTTATCGGTCTTCTACTTTTCTCAACATGCACACAAATT 60
||| |||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGCAGAAAGCAGCTTCGATATTTATCGGTCTTCTACTTTTCTCAACATGTACTCAAATT 60
Query 61 CTGGCACAATCTTGCAACAATG-ACTCTGATTGTACTAATCTAAAATGTGCAACGAAGAA 119
||||||||||||||||| |||| | |||||||||||||||||||| |||||||| ||||
Sbjct 61 CTGGCACAATCTTGCAAGAATGCA-TCTGATTGTACTAATCTAAATTGTGCAACCAAGA- 118
Query 120 TATCAAGTGTGAGCAGAACAAGTGTCAATGCCTTGATGAAAGATACATCCGTGCGATATC 179
| ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 119 T--CAAGTGTGAGCAGAACAAGTGTCAATGCCTTAATGAAAGATACGTCCGCGCGATATC 176
Query 180 GCTTAACACGAGGTCACCGAGGTGTAATGTTCAATCTTGCATTGACC-ATTGCAAAGCAA 238
||||| || | |||||||||||||||||||||||||||| || ||||| |||
Sbjct 177 CCTTAA---GA---C---GAGGTGTAATGTTCAATCTTGCATTGACTTAT-GCAAATCAA 226
Query 239 TAGGCGAAGTAATTTATGTTTGTTT-TACGTACCATTGTTATTGTCGCAAACCTCCAATG 297
|||||||||||||||||||||| | | | |||| |||||||||||||||||||||||||
Sbjct 227 AAGGCGAAGTAATTTATGTTTGTGTCT-CATACCGTTGTTATTGTCGCAAACCTCCAATG 285
Query 298 TAA 300
|||
Sbjct 286 TAA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10530942564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5