BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17720.1
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493105 jgi|Araly1|493105|fgenesh2_kg.7__2538__AT4G17720.1 1895 0.0
> Ahg493105 jgi|Araly1|493105|fgenesh2_kg.7__2538__AT4G17720.1
Length=1256
Score = 1895 bits (1026), Expect = 0.0
Identities = 1189/1266 (94%), Gaps = 17/1266 (1%)
Strand=Plus/Plus
Query 11 tttttcttttatttttCACTCTTCTTCACATCAAATCCGCGACCAGAGAtttttct-ttc 69
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTTCTTTTCTTTTTCTCTCTTCTTCACATCAAATCCGCGACCAGAGATTTTTCTCTT- 59
Query 70 ctttgatttttcgtttcgtttcgtttcAAATATTGTTCCTCCTGTGTGAAG-GAAAAACA 128
|||||| || |||||||||||||||||| |||||||||| | |||||| ||||| |
Sbjct 60 CTTTGA---TT--TTTCGTTTCGTTTCAAAT-TTGTTCCTCC-G-GTGAAGAAAAAAAAA 111
Query 129 ATCTTCCATTTCAATCCGCGTCAACGCGATTTTCTTCATGACGATGACAACAGTTAAAGT 188
| ||| | |||||||||||| ||| |||| |||| ||||| |||||||||| ||||||||
Sbjct 112 AACTTACGTTTCAATCCGCGCCAAAGCGACTTTCGTCATGTCGATGACAACTGTTAAAGT 171
Query 189 GAGCAATGTTTCTCTAGGAGCAACCGATAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 248
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 172 GAGCAATGTCTCTCTTGGAGCAACCGAGAGAGATCTCAAGGAGTTCTTTTCCTTTTCTGG 231
Query 249 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTCAC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 CGATATTCTGTACCTTGAGACGCAGAGCGAGACTGAGCGGACTAAACTGGCATATGTTAC 291
Query 309 TTTTAAGGATCTACAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 368
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTTCAAGGATCTGCAAGGAGCTGAAACTGCGGTTCTTCTCTCGGGAGCAACGATTGTTGA 351
Query 369 TTCTTCAGTCATTGTCTCTATGGCTCCTGATTACCAACTGTCCCCTGAGGCTTTAGCTTC 428
|||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 352 TTCTTCGGTTATTGTCTCTATGGCCCCTGATTACCAACTATCGCCTGAGGCTTTAGCTTC 411
Query 429 CTTGGAACCCAAGGACAGCAATAAATCTCCCAAGGCAGGTGACTCCGTGTTGAGAAAAGC 488
||| |||||||| || ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 412 CTTAGAACCCAAAGAAAGCAACAAATCTCCCAGGGCAGGTGACTCCGTGTTGAGAAAAGC 471
Query 489 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGAAGATGTTGTGAGCAGCATGCTTGCAAAGGGCTTTATCCTGGGAAAAGATGCCATAGC 531
Query 549 TAAAGCCAAAAGTGTTGACGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 608
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CAAAGCCAAGAGTGTTGATGAGAAGCACCAGCTAACATCTACAGCATCAGCCAAAGTCGC 591
Query 609 ATCTTTTGACAAGAAAATTGGTTTCACTGATAAGATCAACACAGGCACGGTGGTAGTGGG 668
|||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||
Sbjct 592 ATCTTTTGACAAGAAAATCGGTTTCACTGATAAGATCAACACAGGCACAGTCGTTGTGGG 651
Query 669 AGAAAAGGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 728
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGAAAAAGTCAGGGAAGTTGATCAGAAGTACCAAGTCTCAGAGAAAACCAAATCAGCAAT 711
Query 729 CGCTGCAGCGGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 788
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CGCTGCAGCAGAGCAGACAGTGAGCAATGCAGGTTCAGCTATAATGAAGAACCGGTATGT 771
Query 789 TCTCACAGGTGCCACGTGGGTTACTGGAGCATTCAACAAAGTTGCTAAAGCTGCAGAAGA 848
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 772 TCTCACAGGTGCCACGTGGGTCACTGGAGCCTTCAACAAAGTTGCTAAAGCTGCAGAAGA 831
Query 849 AGTTGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 908
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGTCGGACAAAAGGCTAAAGAGAAAGTTGGTATGGCTGAGGAAGAGGATAAGAGGAAAGT 891
Query 909 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGTTGATGAGTTTGCTAGAGTTCACTTGTCTGAATCACCAAAGGCAGCTTCATCAACGCA 951
Query 969 AGAAGCCGAACGTGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGATTCTGAACA 1028
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 952 AGAAGCCGAACATGAATCAAAACTCTCTGAATCTCCTGAAGCAAAGAAAGAATCTGAACA 1011
Query 1029 TCTTGAGCCACAATCGAAACCATTGCAGCAACAATCTCCTCCACCTATGGCTTCAGCTCC 1088
|||||| |||||| || | || |||||||| |||||||||||||||||||| | |||||
Sbjct 1012 TCTTGAACCACAACCGCAGCCGCTGCAGCAAAAATCTCCTCCACCTATGGCTCCGGCTCC 1071
Query 1089 TGCTCCGGCTCAACCTTGAGATATGC--A-A--TCAAAGACCTTTCTGATTCTTGTTGTA 1143
||||| ||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 1072 GGCTCCTGCTCAACCTTGAGATATGCTGACAAGT-AAAGACCTTTCTGATTCTTGTTGTA 1130
Query 1144 AACGGTAAAACTTGGAACTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTA 1203
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AACGGTAATACTTGGATCTAATCTCTCTCAGATTGTTGAAGATGAAGATTGAACTTGTTA 1190
Query 1204 TTTAGGACGAAGACTTGTGTTCTTGTAACATTGGATTCATGGTCGATTTGGTAATTAGAC 1263
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1191 TTTAGGACGAAGACTTGTGGCCTTGTAACATTGGATTCAGGGTCGATTTGGTAATTAGAC 1250
Query 1264 CTTAAA 1269
|| |||
Sbjct 1251 CTGAAA 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49407300432
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5