BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17740.1
Length=1692
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329753 jgi|Araly1|329753|fgenesh1_pm.C_scaffold_7001980 2538 0.0
> Ahg329753 jgi|Araly1|329753|fgenesh1_pm.C_scaffold_7001980
Length=1548
Score = 2538 bits (1374), Expect = 0.0
Identities = 1491/1549 (96%), Gaps = 2/1549 (0%)
Strand=Plus/Plus
Query 34 ATGGAGGTCCTTGCGAGCTCTTCATTATCCCCAATTTCTTTTACTAAGCCTAACAAAATA 93
||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGGAGGTCCTTGCGAGTTCTTCATTATCCCCATTTTTTTTTACTAAGCCTAACAAAATA 60
Query 94 AACCCTAATTTCTCAATCCAGGTGAAATTGTGGGTAAAACAACCTCCAAAGATTTCAAAA 153
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 AACCCTAATTTCTCAATCCAGGTGAAATTGTGGGTGACTCAACCTCCAAAGATTTCAAAA 120
Query 154 GCTAGCAAATTTAGTTATGCTCGTAGTCGTAGTAACATTTCAAGGAGCAATGCAGCAAAC 213
|| ||||| |||||||||| ||||||||||||||||| ||||||||||||||| |||||
Sbjct 121 GCAAGCAACTTTAGTTATGGTCGTAGTCGTAGTAACAAATCAAGGAGCAATGCAACAAAC 180
Query 214 CCAGGAGTCGTGTTCGTCTGTAATAGATTTCTGTGTGTTATCGAAAGAAATGATCAGAGG 273
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CCAGGAGTCGTATTCGTCTGTAATAGATTTCTGTGTGTTATCGAAAGAAATGATGAGAGG 240
Query 274 AAATTATCTGGGAAGGTTATGATGAAATCTTCTGTTAATTTCAGACAGAATCTCTCTGTT 333
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AAATTCTCTGGGAAGGTTATGATGAAATCTTCAGTTAATTTCAGACAGAATCTCTCTGTT 300
Query 334 GCATTAGTTCGGATCGTTTCTGTTCTGCTTGTCTCTTCCATTTCTGTTGTTACCACTGAT 393
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GCATTTGTTCGGATAGTTTCTGTTCTGCTTGTCTCTTCCATTTCTGTTGTCACCACTGAT 360
Query 394 TCACCACCATCATGGGGTCTTACTGAAGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACA 453
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCACCACCATCATGGGGTCTTAGTGAGGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACA 420
Query 454 ATTGATCGTGCTTATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAG 513
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGATCGAGCATATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAG 480
Query 514 ACTGCTTTACGAAATGAGCCTATGAACACTCGAGAAGAGACATACATGGCTATCAAGAAA 573
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTGCTTTACGCAATGAGCCTATGAACACTCGAGAAGAGACATACATGGCTATCAAGAAA 540
Query 574 ATGGTGGCAACACTAGATGATCCTTTTACTCGATTCTTGGAGCCCGGAAAGTTCAAGAGT 633
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 ATGGTTGCAACACTAGATGATCCTTTTACTCGATTCTTGGAGCCCGGAAAGTTTAAGAGT 600
Query 634 TTGCGGTCGGGGACTCAAGGGGCGGTTACGGGTGTTGGGCTGTCGATAGGTTACCCCACT 693
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 601 TTGCGGTCCGGGACTCAAGGGGCTGTTACAGGTGTTGGGCTGTCGATAGGTTACCCCGCT 660
Query 694 GCATCAGATGGACCACCAGCTGGGCTTGTTGTTATATCAGCTGCTCCAGGAGGTCCTGCA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCATCAGATGGACCACCAGCTGGGCTTGTTGTTATATCAGCTGCTCCAGGAGGTCCTGCA 720
Query 754 AATAGGGCGGGGATATT-ACCTGGCGATGTTATTCAAGGAATTGATAATACAACCACAGA 812
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AATAGGGCGGGAAT-TTCACCTGGCGATGTTATTCTAGGAATTGATAATACAACCACAGA 779
Query 813 AACTCTTACCATATACGATGCTGCACAGATGTTGCAGGGACCTGAAGGAAGTGCAGTGGA 872
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 AACTCTGACCATATACGATGCTGCACAGATGTTGCAGGGACCTGAAGGAAGTACAGTGGA 839
Query 873 GCTAGCGATTCGCAGTGGACCTGAAACGAGACTCTTAACTTTGACGCGAGAGCGGGTTTC 932
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GCTAGCAATTCGTAGTGGACCTGAAACGAAACTCTTAACTTTGACGCGAGAGCGGGTTTC 899
Query 933 TGTGAATCCAGTGAAGTCAAGATTATGTGAACTTCCTGGTTCTGGGAGTAACTCCCCTAA 992
||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 900 TGTGAATCCGGTGAAGTCAAGATTATGTGAACTTCCTGGTTCTGGGGGTAATTCCCCTAA 959
Query 993 GATTGGCTATATCAAGCTAACAACATTCAATCAAAATGCTTCTAGTGCGGTAAGGGAAGC 1052
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTGGGTATATCAAGCTAACAACATTCAATCAAAATGCTTCTAGTGCGGTAAGGGAAGC 1019
Query 1053 TATTGAAACCTTGAGAGGCAACAATGTAAACGCATTCGTCTTGGACCTTCGAGACAATAG 1112
|||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 1020 AATTGAAACTTTGAGAGGCAACCATGTAAATGCATTTGTCTTGGACCTTCGAGACAATAG 1079
Query 1113 TGGAGGTTCTTTCCCAGAAGGAATTGAGATTGCTAAATTTTGGTTAGATAAAGGAGTGAT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGAGGTTCTTTCCCAGAAGGAATTGAGATTGCTAAATTTTGGTTAGATAAAGGAGTGAT 1139
Query 1173 TGTGTATATTTGCGATAGTCGAGGTGTTAGAGATATATATGATACTGATGGAAGCAATGC 1232
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGTGTATATTTGCGATAGTCGTGGTGTTAGAGATATATATGATACTGATGGAAGCAATGC 1199
Query 1233 TATAGCAACCTCTGAGCCTCTTGCCGTTCTTGTTAACAAAGGCACCGCGAGTGCCAGCGA 1292
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 TATAGCAATCTCTGAGCCTCTTGCCGTTCTCGTTAACAAAGGCACCGCGAGTGCCAGCGA 1259
Query 1293 GATATTAGCAGGTGCCTTGAAAGATAATAAACGTGCTCTGGTTTATGGAGAACCAACTTA 1352
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 GATATTAGCAGGCGCCTTGAAAGATAACAAACGTGCTCTGGTTTATGGAGAACCAACTTA 1319
Query 1353 CGGAAAAGGCAAGATACAGTCGGTTTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAAC 1412
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1320 CGGAAAAGGCAAGATACAGTCAGTGTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAAC 1379
Query 1413 AGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAAGTCGGTGTAACTCCTGA 1472
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1380 AGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAGGTCGGTGTTACTCCTGA 1439
Query 1473 TCATCCATTGCCAAAGTCGTTTCCGAAAGATGAAGAGGCGTTCTGTGGATGCCTTAAGGA 1532
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCATCCATTGCCAAAGTCGTTTCTGAAAGATGAAGAGGCGTTCTGTGGATGCCTTAAGGA 1499
Query 1533 TCCTACAGCTGCTTGTTATCTCAATCAAGGCCTACTTTTTTCTAGATGA 1581
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TCCTACAGCTGCTTGTTATCTCAATCAAGGCCTACTTTTTTCTAGATGA 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63458348170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5