BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17750.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493100 jgi|Araly1|493100|fgenesh2_kg.7__2533__AT4G17750.1 2032 0.0
> Ahg493100 jgi|Araly1|493100|fgenesh2_kg.7__2533__AT4G17750.1
Length=1551
Score = 2032 bits (1100), Expect = 0.0
Identities = 1276/1360 (94%), Gaps = 16/1360 (1%)
Strand=Plus/Plus
Query 23 TCTCTTTCTTTATCCGTACG-AAAATGGACGGTGTTACCGGCGGAGGAACGAATATCGGC 81
||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTCTCTCTCTATCCGTA-GAAAAATGGACGGTGTTACCGGCGGAGGAACGAATATCAGC 59
Query 82 GAGGCTGTGACGGCGCCACCACCGCGGAATCCGCATCCAGCGACTTTACTTAATGCGAAC 141
||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||
Sbjct 60 GAGGCTGTGACGGCGCCGCCACCGCGGAATCCGCATCCAGCGACGTTGCTTAGTGCGAAC 119
Query 142 TCTTTACCGCCCCCTTTCCTTAGCAAGACGTATGACATGGTGGAAGATCCGGCGACGGAC 201
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TCTTTACCTCCTCCTTTCCTTAGCAAGACGTATGACATGGTGGAAGATCCGGCGACGAAC 179
Query 202 GCGATTGTCTCATGGAGTCCGACGAACAATAGCTTCATTGTTTGGGATCCACCGGAGTTT 261
|||||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 180 GCGATTGTTTCATGGAGTCCGACGAACAATAGCTTTATTGTTTGGGATTCATCGGAGTTT 239
Query 262 TCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGCCAG 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 TCTCGTGATCTTCTACCTAAATACTTCAAACACAACAATTTCTCCAGCTTTGTTCGTCAG 299
Query 322 TTAAACACCTATGGTTTTAGGAAAGTGGATCCAGATCGATGGGAATTTGCTAATGAAGGT 381
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 300 TTAAATACCTATGGTTTTAGGAAAGTTGATCCAGATCGGTGGGAATTTGCTAATGAAGGA 359
Query 382 TTCTTAAGAGGTCAAAAACATCTATTGAAGAAGATAAGCCGGAGAAAATCTGTTCAGGGA 441
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 360 TTCTTAAGAGGTCAAAAACATCTATTGAAGACGATAAGCCGGAGAAAATCTGCTCAGGGA 419
Query 442 CATGGTAGTAGTAGTAGTAATCCACAATCTCAGCAATTATCTCAGGGTCAAGGTTCAATG 501
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAT-G--GTAGTAGTAGTAATCCACAATCTCAGCAATTATCTCAGGGTCAAGGTTCAATG 476
Query 502 GCTGCATTATCTTCATGTGTTGAGGTTGGGAAATTTGGGTTAGAGGAAGAAGTTGAACAG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTGCATTATCTTCATGTGTTGAGGTTGGGAAATTTGGGTTAGAGGAAGAAGTTGAACAG 536
Query 562 CTTAAAAGAGACAAAAACGTGTTGATGCAGGAACTCGTTAAGTTACGCCAGCAGCAACAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTTAAAAGAGACAAAAACGTGTTGATGCAGGAACTCGTTAAGTTACGCCAGCAGCAACAA 596
Query 622 ACAACAGATAATAAACTTCAGGTTTTGGTTAAACATCTTCAGGTTATGGAGCAGAGGCAA 681
|||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 597 ACAACAGATAGTAAACTTCAGGTTATGGTTAAACATCTTCAGGCTATGGAGCAGAGGCAA 656
Query 682 CAACAGATTATGTCTTTCCTTGCTAAAGCTGTACAGAATCCTACTTTCCTCTCTCAGTTT 741
|||||||| |||||||| |||||||||||||| | |||||| ||||||||||||||||||
Sbjct 657 CAACAGATCATGTCTTTTCTTGCTAAAGCTGTCCGGAATCCAACTTTCCTCTCTCAGTTT 716
Query 742 ATACAGAAGCAGACTGATAGTAATATGCATGTAACCGAGGCCAATAAGAAGCGGAGACTC 801
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 ATACAGACGCAGACCGATAGTAATATGCATGTAACCGAGGCTAATAAGAAGCGGAGACTC 776
Query 802 AGAGAGGATAGTAC---TGCTGCTACTGA-GAGTAATAGTCATAGCCATAGCTTGGAAGC 857
|||||||||| ||| ||||||||||| ||| ||| | |||||| ||||| ||| ||
Sbjct 777 AGAGAGGATACTACCGATGCTGCTACTGCTGAG-AAT--T-ATAGCCGTAGCTCGGATGC 832
Query 858 ATCAGATGGACAGATAGTTAAGTATCAGCCACTTAGAAACGATTCAATGATGTGGAACAT 917
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 833 ATCAGATGGACAGATAGTTAAGTATCAGCCTCATAGAAACGATTCAGTGATGTGGAACAT 892
Query 918 GATGAAAACAGATGATAAGTATCCGTTTCTTGACGGGTTCTCATCTCCAAACCAGGTATC 977
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 893 GATGAAAACAGATGATAAGTTTCCGTTTCTTGACGGGTTCTCATCTCCAAACCGGGTGTC 952
Query 978 AGGAGTCACTCTTCAAGAGGTACTACCCATAACTTCAGGACAGTCACAGGCATATGCATC 1037
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 953 AGGAGTCACTCTTCAAGAGGTACTGCCCACAACTTCAGGACAGTCACAGGCATATGCACC 1012
Query 1038 TGTACCATCAGGACAGCCTTTATCATACTTACCCTCTACTTCAACTTCTCTCCCGGATAC 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CATACCATCAGGACAGCCTTTATCATACTTACCCTCTACTTCAACTTCTCTCCCGGATAC 1072
Query 1098 CATAATGCCAGAGACTTCCCAGATACCACAATTGACACGAGAGAGTATCAACGACTTCCC 1157
| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1073 CGTAATGCCAGAGATTTCCCGGATGCCACAATTGACACGAGAGAGTATCAACGACTTCCC 1132
Query 1158 TACAGAAAACTTCATGGATACAGAGAAGAATGTTCCAGAGGCATTCATCTCTCCAAGCCC 1217
||||||||||| ||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct 1133 TACAGAAAACTACATGGATACCGAGACTAATGCTCCAGATACATTCATCTCTCCAAGCCC 1192
Query 1218 ATTCCTTGATGGTGGTTCAGTCCCGATTCAGCTTGA-GGGAATACCCGAAGACCCCGAGA 1276
|||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||
Sbjct 1193 ATTCCTTGATGGTGGTTCAGTCCCAATTCAGCTTGACGGGA-TACCTGAAGACCCCGAGA 1251
Query 1277 TTGATGAACTAATGAGTAACTTTGAATTCCTTGAAGAATATATGCCAGAAAGCCCAGTTT 1336
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1252 TTGATGAACTAATGAGTAACTTTGAATTCCTTGAAGAATATCCACCAGAAAGTCCAGTTC 1311
Query 1337 TTGGAGATGCAACTACACTAGAGaacaacaacaacaacaa 1376
||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1312 TTGGAGATGCAACTACAGTAGAGAACAGCAACAACA-CAA 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5