BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17760.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329751 jgi|Araly1|329751|fgenesh1_pm.C_scaffold_7001978 1458 0.0
> Ahg329751 jgi|Araly1|329751|fgenesh1_pm.C_scaffold_7001978
Length=903
Score = 1458 bits (789), Expect = 0.0
Identities = 866/904 (96%), Gaps = 2/904 (0%)
Strand=Plus/Plus
Query 32 ATGAGTTCGTCCTCGTCGCCGGCGATTGAACCAGACACACCGGACCTGATTTGCCAGCTC 91
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGAGTTCGTCCTCGTCACCGGCGATTGAACCAGACACGCCGGACCTAATTTGCCAGCTC 60
Query 92 GATAATGTTCAAGGAATGGTCGATGCACTCACTTGCGTCCGATGGAAACGCCACCAGGAT 151
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATAATGTTCAAGGCATGGTCGATGCACTCACTTGCGTCCGATGGAAACGCCACCAGGAT 120
Query 152 GCTTTAGTAGAATTATCTGAACACGGAATAGTTTTGATTGTTGAAGAATCAGGTTGTCTT 211
|||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||
Sbjct 121 GCTTTAGTAGAATTATCTGAGCACGGAATAGTTTTAATTGTGGAGGAATCAGGTTGTCTT 180
Query 212 CAAGCCAAAGTTTATCTTCAACGCGAGCTATTCACGAAATACGAGTATGGAGCTCAAGGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGCCAAAGTTTATCTTCAACGCGAGCTATTCACGAAATACGAGTATGGAGCTCAAGGT 240
Query 272 AGGCCGAGATTCGGAATCAGCTTAGGGCTTCTTGTTGATTGCTTGAACACATTTTCATCA 331
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AGGCCGAGATTTGGAATCAGCTTAGGTCTTCTTGTTGATTGCTTGAACACATTTTCATCA 300
Query 332 CCTGGACATTCTAATACTATAGAAATCAAGTATCCAGGACCTGATATGGAGCTTCTTCTC 391
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTGGACATTCAAATACTATTGAAATCAAGTATCCAGGACCTGATATGGAGCTTCTTCTC 360
Query 392 AAATCTGTTGATACCTTAAACTCTTGCATCTACTCTGAGATAAGAACTAGAATTCCC-GA 450
||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||
Sbjct 361 AAATCTGTTGATACCTTAAACGCTTGCATCTACTCTGAGATAAGAACGAGAA-TCCCGGA 419
Query 451 AACTGTTACTTGGGACTACAACTTTGAGCAGGCGGGAATCGCGCCACTTACTTTTACAGT 510
||| || || ||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 420 AACCGTCACATGGGACTACAACTTTGAGCAGGCAGGAAGCGCGCCACTTACTTTTACCGT 479
Query 511 AAAGTCAGCGGCGTTGAAGGAAGCAATAGATGATCTTGAATGGCCTGGTTCAAGTGTACA 570
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AAAGTCAGCGGCGTTGAAGGAAGCAATAGATGATCTTGAATGGCCTGGATCAAGTGTACA 539
Query 571 GATCAGTCTTCAAAAGGAACCCCCTTGTGTAATCTTTAGAGGAGAAGGACATGGAGACTT 630
|||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 540 GATCAGCCTTCAAAAGGAACCCCCTTGTGTTATCTTCAGAGGAGAAGGACATGGAGACCT 599
Query 631 GCAGATAGACTTCATGTATTATGCCAACACAGATCTTCTCCTTGCCTTTCATTGTGATAC 690
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACAGATAGACTTCATGTATTATGCCAACACAGATCTTCTCCTTGCCTTTCATTGTGATAC 659
Query 691 CGAAGTCTCTTACGGGTACAAATACAAGTTTTTGAAAGCAACAACGGCAAACATACCGGG 750
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||
Sbjct 660 CGAAGTCTCTTACGGGTACAAATACAAGTTTTTGAAGGCAACAACCGCAAATATACCAGG 719
Query 751 AAACGTAGTGAGAGAAAACAGGGGAAGCAAACTAACAATAGGAAGAGGAGGAATGTTGAA 810
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 720 AAACGTAGTGAGAGAAAACAGGGGAAGCAAACTGACAATAGGAAGAGGCGGAATGTTGAA 779
Query 811 AGTTCAGCACTTGGTTTCAGTTTCTAAAGCTTTAGCTCCACAAGTGGAATCCGCAGGGTA 870
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 780 AGTTCAGCACTTGGTTTCAGTTGCTAAAGCTTTAGCTCCACAAGTGGAATCTGCAGGGTA 839
Query 871 TCAGCCACCGAGTCGGATTGCTTATATAGAGTTCTTTGTGAAGCCTGAAGAGCCTGCTGA 930
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 840 TCAGCCACCGAGTCGGATTGCTTATATAGAGTTCTTTGTGAAGCCCGAAGAACCTGCTGA 899
Query 931 TTAA 934
||||
Sbjct 900 TTAA 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5