BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17780.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354975 jgi|Araly1|354975|fgenesh1_pg.C_scaffold_7002148 1194 0.0
Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1 178 9e-44
> Ahg354975 jgi|Araly1|354975|fgenesh1_pg.C_scaffold_7002148
Length=897
Score = 1194 bits (646), Expect = 0.0
Identities = 822/905 (91%), Gaps = 20/905 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCTACATAGTTGCCGATCTTCTAGAAGAT 60
||||||||||||||||||||||||||||||||| |||||||| | ||||| || || |||
Sbjct 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCGACATAGTTTCAGATCTACTGGAGGAT 60
Query 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTCATATCGAAAAGCGTCTCAAAACGATGG 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTAATTTCGAAAAGCGTCTCAAAACGATGG 120
Query 121 AGATCAATTCTTGAGTCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATCAATTCTTGAATCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180
Query 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240
Query 241 TCGCAGTGCAAAGGGAACGAAGAGATCGTCTATCTGCACTGCAACGCCGCACAACCCTCG 300
|||| |||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||
Sbjct 241 TCGCGGTGCAAAGGGAATGAAGAGATGGTCTATCTGCACTACAACGCCGCACGACCCTCG 300
Query 301 TTTACTTGCGACGGTTTGGTCTGCATTCTCGAACCACGTTGGATAGACGTTTTGAACCCC 360
|| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 301 TTGAGTTGCGACGGTTTGGTCTGCATTCTCGAACCACATTGGATCGACGTTTTGAACCCC 360
Query 361 TGGACAAGGCAACTCCGGCGATACGGATTCGGATTTGGAACCATATTTGGAGTA-GGTTC 419
|||||||||||||||||||||||||||| |||||||||| ||||| | |||||| ||| |
Sbjct 361 TGGACAAGGCAACTCCGGCGATACGGATACGGATTTGGACCCATAATCGGAGTATGGT-C 419
Query 420 GGCTTTCTCTCCAAGACATTGGGCAATGGGATTTGGTAAAGATAAAGTTACCGGAAGCTA 479
|||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GGCTTTCTCTCCGGGAAATTGGGCAATGGGATTTGGTAAAGACAAAGTTACCGGAAGCTA 479
Query 480 TAAAGTAGTGAAGATGTGTTTAATATCTTTCAGTGAAATTTGTGCACGTGATCCTGAGGT 539
|||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||||||
Sbjct 480 TAAAGTAGTGAAGATGTGTTTATTATCTTTCAGTCAAATTAGGGTACGTGATCCTGAGGT 539
Query 540 GGAGTATAGTGTTCTTGATGTCGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTA 599
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAATATAGTGTTCTTGATGTTGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTG 599
Query 600 TAAGGTCT-TTGAGGTAAGAAA-ATCGGAGTGTGCGAATGGATCGATCTACTGGTTACAC 657
|||||||| || | ||| ||| ||| | ||||| |||||||||||| |||||||||||
Sbjct 600 TAAGGTCTCTTCCG-TAA-AAAGATCTGTGTGTGTGAATGGATCGATTTACTGGTTACA- 656
Query 658 AAACCT-ACTGAGAGGGCTTGGACAATACTAGCCTTGGATCTTCACAAAGAAGAGTTACA 716
|||| | | ||| |||| ||| | ||||||||||||||||||| ||||||||||||| ||
Sbjct 657 AAACATTATTGATAGGGTTTGCAAAATACTAGCCTTGGATCTTAACAAAGAAGAGTTCCA 716
Query 717 TAACATTTCAGTTCCTGATATGAGTGTCACGCAAGAAACCTTCCAAATAGTGAACCTTGA 776
||| | || ||||| | |||||||| ||| ||||||||| | | ||||||||||||||
Sbjct 717 TAATGTCTCTGTTCCGGCTATGAGTGCCACACAAGAAACC--C-ATATAGTGAACCTTGA 773
Query 777 GGACCGCCTGGCCATAGCCAATACCTATACTAAGACTGAATGGAAACTAGAGATTTGGA- 835
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 774 AGACCGCCTGGCCATAGCCAATACCGATACTAAGGCTGAATGGAAACTAGAGATTTGGAT 833
Query 836 ---G---CATGGATACAGAAGTAGAAACATGGACCAAGACTTACTCCATA-GATTTAGAG 888
| ||||||| |||||||| |||||||||||||||||||||| ||| | |||||||
Sbjct 834 TTTGGAGCATGGATGCAGAAGTAAAAACATGGACCAAGACTTACTCTATAAG-TTTAGAG 892
Query 889 AATAG 893
|||||
Sbjct 893 AATAG 897
> Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1
Length=1067
Score = 178 bits (96), Expect = 9e-44
Identities = 351/466 (75%), Gaps = 50/466 (11%)
Strand=Plus/Plus
Query 633 GAATGGATCGATCTACTGGTTACACAAACCTACTGAGAGGGCTTGGACAATACTAGCCTT 692
||||||||| ||||||||||| ||||| || || || | || | ||||||||||||
Sbjct 587 GAATGGATCAATCTACTGGTT--ACAAA-TTAGTGCGA--G-TTACATAATACTAGCCTT 640
Query 693 GGATCTTCACAAAGAAGAGTTAC-ATAACATTT-C-AG-TTCCTGATATGAGTGTCACGC 748
|||||||||||||||| || ||| || || | | |||| | || | | |||||||
Sbjct 641 GGATCTTCACAAAGAA-AGCTACTATGGTATCCACCACCTTCCGGCTACGTGGGTCACGC 699
Query 749 AAGAAACCTTCCAAATAGTGAACCTTGAGGACCGCCTGGCCATAGCCA--AT-ACCTATA 805
| |||||| | | ||||||||||||||||||| || ||||| |||| | ||| | |
Sbjct 700 AGGAAACC--C-AGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACCAA-A 755
Query 806 CTAAGAC-TGAATGGAAACTAGAGATTTGGAGCATGGATACAGAAG--------T--AG- 853
| | | ||| |||| ||||||||| ||||||||||||| ||||| | ||
Sbjct 756 GTTGGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGC 815
Query 854 AA-----AC--ATGGACCAAGACTTACTCCATA-GATTTAGAGAATAGAGTTGCT-TC-C 903
|| || ||||| |||||||||||||||| | ||||| ||||||||| | | |
Sbjct 816 AAGCGTTACTCATGGAGCAAGACTTACTCCATAAG-TTTAGCCCATAGAGTTGTTGTATC 874
Query 904 CGGGAAA-GGCGGA-ACAGGTGGTTCAC-CCCGGTGTCGGTTTCTAAGCAAGGAAATATT 960
| || | ||| || | ||||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 875 CTGGCTATGGCAGAGA-AGGTGGTTCACGCCCG-TGTCGGTTTCTAAGCAAGGGAATCTT 932
Query 961 GTCTTCTATGATAATCACAAGAGACTTTTCAAGTATTATCCAAGGAAAA-ACGAGATTCT 1019
||||||||||| ||| | ||||| || ||||| |||||| || || | | | |||||||
Sbjct 933 GTCTTCTATGACAATAAGAAGAGGCTGTTCAAATATTATTCA-GGTAGAGATGAGATTCG 991
Query 1020 TTATCTCTCCGC-AGACACTTGTGTTATATCTCCtttttttGAAAA 1064
|| ||||||| | | ||| ||||||||||||| ||| |||||||
Sbjct 992 TTGTCTCTCCTCTA-ACATTTGTGTTATATCTTCTTACCTTGAAAA 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5