BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17780.1 Length=1197 Score E Sequences producing significant alignments: (Bits) Value Ahg354975 jgi|Araly1|354975|fgenesh1_pg.C_scaffold_7002148 1194 0.0 Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1 178 9e-44 > Ahg354975 jgi|Araly1|354975|fgenesh1_pg.C_scaffold_7002148 Length=897 Score = 1194 bits (646), Expect = 0.0 Identities = 822/905 (91%), Gaps = 20/905 (2%) Strand=Plus/Plus Query 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCTACATAGTTGCCGATCTTCTAGAAGAT 60 ||||||||||||||||||||||||||||||||| |||||||| | ||||| || || ||| Sbjct 1 ATGGAGGAAGAAGAGAAAAACCCTAGTTCGATCGACATAGTTTCAGATCTACTGGAGGAT 60 Query 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTCATATCGAAAAGCGTCTCAAAACGATGG 120 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 61 ATATTCCTTCGACTTCCCTTGAAATCCATTCTAATTTCGAAAAGCGTCTCAAAACGATGG 120 Query 121 AGATCAATTCTTGAGTCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATCAATTCTTGAATCGAAGACGTTCGTGGAGAGACGAATGAGTCTTCAAAAGAAGCGC 180 Query 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAATCCTGGCTGCTTACAACTGCAAATGCGGCTGGGAGCCTAGGCTCCTCCCCGGGTCG 240 Query 241 TCGCAGTGCAAAGGGAACGAAGAGATCGTCTATCTGCACTGCAACGCCGCACAACCCTCG 300 |||| |||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||| Sbjct 241 TCGCGGTGCAAAGGGAATGAAGAGATGGTCTATCTGCACTACAACGCCGCACGACCCTCG 300 Query 301 TTTACTTGCGACGGTTTGGTCTGCATTCTCGAACCACGTTGGATAGACGTTTTGAACCCC 360 || | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 301 TTGAGTTGCGACGGTTTGGTCTGCATTCTCGAACCACATTGGATCGACGTTTTGAACCCC 360 Query 361 TGGACAAGGCAACTCCGGCGATACGGATTCGGATTTGGAACCATATTTGGAGTA-GGTTC 419 |||||||||||||||||||||||||||| |||||||||| ||||| | |||||| ||| | Sbjct 361 TGGACAAGGCAACTCCGGCGATACGGATACGGATTTGGACCCATAATCGGAGTATGGT-C 419 Query 420 GGCTTTCTCTCCAAGACATTGGGCAATGGGATTTGGTAAAGATAAAGTTACCGGAAGCTA 479 |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 GGCTTTCTCTCCGGGAAATTGGGCAATGGGATTTGGTAAAGACAAAGTTACCGGAAGCTA 479 Query 480 TAAAGTAGTGAAGATGTGTTTAATATCTTTCAGTGAAATTTGTGCACGTGATCCTGAGGT 539 |||||||||||||||||||||| ||||||||||| ||||| | | ||||||||||||||| Sbjct 480 TAAAGTAGTGAAGATGTGTTTATTATCTTTCAGTCAAATTAGGGTACGTGATCCTGAGGT 539 Query 540 GGAGTATAGTGTTCTTGATGTCGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTA 599 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 540 GGAATATAGTGTTCTTGATGTTGAAACTGGTGAATGGCGGATGTTGAGTCCACCTCCTTG 599 Query 600 TAAGGTCT-TTGAGGTAAGAAA-ATCGGAGTGTGCGAATGGATCGATCTACTGGTTACAC 657 |||||||| || | ||| ||| ||| | ||||| |||||||||||| ||||||||||| Sbjct 600 TAAGGTCTCTTCCG-TAA-AAAGATCTGTGTGTGTGAATGGATCGATTTACTGGTTACA- 656 Query 658 AAACCT-ACTGAGAGGGCTTGGACAATACTAGCCTTGGATCTTCACAAAGAAGAGTTACA 716 |||| | | ||| |||| ||| | ||||||||||||||||||| ||||||||||||| || Sbjct 657 AAACATTATTGATAGGGTTTGCAAAATACTAGCCTTGGATCTTAACAAAGAAGAGTTCCA 716 Query 717 TAACATTTCAGTTCCTGATATGAGTGTCACGCAAGAAACCTTCCAAATAGTGAACCTTGA 776 ||| | || ||||| | |||||||| ||| ||||||||| | | |||||||||||||| Sbjct 717 TAATGTCTCTGTTCCGGCTATGAGTGCCACACAAGAAACC--C-ATATAGTGAACCTTGA 773 Query 777 GGACCGCCTGGCCATAGCCAATACCTATACTAAGACTGAATGGAAACTAGAGATTTGGA- 835 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 774 AGACCGCCTGGCCATAGCCAATACCGATACTAAGGCTGAATGGAAACTAGAGATTTGGAT 833 Query 836 ---G---CATGGATACAGAAGTAGAAACATGGACCAAGACTTACTCCATA-GATTTAGAG 888 | ||||||| |||||||| |||||||||||||||||||||| ||| | ||||||| Sbjct 834 TTTGGAGCATGGATGCAGAAGTAAAAACATGGACCAAGACTTACTCTATAAG-TTTAGAG 892 Query 889 AATAG 893 ||||| Sbjct 893 AATAG 897 > Ahg483455 jgi|Araly1|483455|fgenesh2_kg.4__2515__AT2G43445.1 Length=1067 Score = 178 bits (96), Expect = 9e-44 Identities = 351/466 (75%), Gaps = 50/466 (11%) Strand=Plus/Plus Query 633 GAATGGATCGATCTACTGGTTACACAAACCTACTGAGAGGGCTTGGACAATACTAGCCTT 692 ||||||||| ||||||||||| ||||| || || || | || | |||||||||||| Sbjct 587 GAATGGATCAATCTACTGGTT--ACAAA-TTAGTGCGA--G-TTACATAATACTAGCCTT 640 Query 693 GGATCTTCACAAAGAAGAGTTAC-ATAACATTT-C-AG-TTCCTGATATGAGTGTCACGC 748 |||||||||||||||| || ||| || || | | |||| | || | | ||||||| Sbjct 641 GGATCTTCACAAAGAA-AGCTACTATGGTATCCACCACCTTCCGGCTACGTGGGTCACGC 699 Query 749 AAGAAACCTTCCAAATAGTGAACCTTGAGGACCGCCTGGCCATAGCCA--AT-ACCTATA 805 | |||||| | | ||||||||||||||||||| || ||||| |||| | ||| | | Sbjct 700 AGGAAACC--C-AGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACCAA-A 755 Query 806 CTAAGAC-TGAATGGAAACTAGAGATTTGGAGCATGGATACAGAAG--------T--AG- 853 | | | ||| |||| ||||||||| ||||||||||||| ||||| | || Sbjct 756 GTTGGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGC 815 Query 854 AA-----AC--ATGGACCAAGACTTACTCCATA-GATTTAGAGAATAGAGTTGCT-TC-C 903 || || ||||| |||||||||||||||| | ||||| ||||||||| | | | Sbjct 816 AAGCGTTACTCATGGAGCAAGACTTACTCCATAAG-TTTAGCCCATAGAGTTGTTGTATC 874 Query 904 CGGGAAA-GGCGGA-ACAGGTGGTTCAC-CCCGGTGTCGGTTTCTAAGCAAGGAAATATT 960 | || | ||| || | ||||||||||| |||| ||||||||||||||||||| ||| || Sbjct 875 CTGGCTATGGCAGAGA-AGGTGGTTCACGCCCG-TGTCGGTTTCTAAGCAAGGGAATCTT 932 Query 961 GTCTTCTATGATAATCACAAGAGACTTTTCAAGTATTATCCAAGGAAAA-ACGAGATTCT 1019 ||||||||||| ||| | ||||| || ||||| |||||| || || | | | ||||||| Sbjct 933 GTCTTCTATGACAATAAGAAGAGGCTGTTCAAATATTATTCA-GGTAGAGATGAGATTCG 991 Query 1020 TTATCTCTCCGC-AGACACTTGTGTTATATCTCCtttttttGAAAA 1064 || ||||||| | | ||| ||||||||||||| ||| ||||||| Sbjct 992 TTGTCTCTCCTCTA-ACATTTGTGTTATATCTTCTTACCTTGAAAA 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44680058724 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5