BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17785.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493095 jgi|Araly1|493095|fgenesh2_kg.7__2528__AT4G17785.1 1838 0.0
> Ahg493095 jgi|Araly1|493095|fgenesh2_kg.7__2528__AT4G17785.1
Length=1293
Score = 1838 bits (995), Expect = 0.0
Identities = 1136/1204 (94%), Gaps = 9/1204 (1%)
Strand=Plus/Plus
Query 11 GAAGATCATATCTTCAAAAACCTCTGATAAGTTTTGGTTCTTGATATAAACAAAATGGGA 70
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1 GAAGATCATATCTTCAAAAACCTTTGATAAGTTAGGGTTCTTGATATAAACAAAATGGGA 60
Query 71 AGATCACCGTGTTGCGATCAAGACAAAGGCGTGAAGAAAGGACCGTGGCTGCCAGAAGAA 130
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGATCACCGTGTTGCGATCAAGACAAAGGCGTGAAGAAAGGACCGTGGCTGCAAGAAGAA 120
Query 131 GATGATAAGCTCACTGCTTATATAAACGAGAATGGTTATGGGAATTGGCGGTCGCTTCCT 190
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 GATGATAAGCTCACTGCTTATATAAACGAGAACGGTTATGGGAATTGGCGTTCGCTTCCT 180
Query 191 AAGCTCGCTGGACTTAACCGCTGTGGCAAGAGCTGTCGGCTCCGGTGGATGAATTATCTC 250
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAGCTCGCTGGACTTAACCGCTGTGGCAAGAGCTGTCGCCTCCGGTGGATGAATTATCTC 240
Query 251 CGGCCTGATATCCGGAGAGGCAAATTTTCCGATGGAGAAGAGAGTACTATCGTTAGACTC 310
|| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 241 CGTCCTGATATCCGGCGAGGCAAAATTTCCGATGAAGAAGAGAGTACTATCGTTAGACTC 300
Query 311 CATGCCCTCCTTGGCAACAAATGGTCGAAAATTGCGGGTCATCTTCCAGGAAGAACAGAT 370
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 301 CATGCCCTTCTTGGCAACAAATGGTCGAAAATTGCGTGTCATCTTCCAGGAAGAACCGAT 360
Query 371 AATGAAATTAAAAACTATTGGAACACTCATATGAGGAAGAAGTTATTGCAAATGGGGATT 430
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 361 AATGAAATTAAAAACTATTGGAACACTCACATGAGGAAGAAGTTGTTGCAAATGGGGATT 420
Query 431 GATCCAGTGACGCACGAGCCAAGAACCAACGATCTTAGCCCTATCCTCGATGTTTCTCAA 490
|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GATCCAATGACGCATGAGCCAAGAACCAACGATCTTAGTCCTATCCTCGATGTTTCTCAA 480
Query 491 ATGCTCGCGGCAGCAATCAACAATGGCCAATTTGGTAACAATAACCTCCTCAACAATAAC 550
||||| || || ||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 481 ATGCTAGCCGCGGCAATCAACAATGGCCAGTTTGGTAACAATAACCTCTTCAACAATAAC 540
Query 551 ACCGCTTTGGAAGATATTCTTAAACTCCAATTGATCCATAAAATGCTTCAAATCATAACC 610
|| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTGCTTTGAAAGATCTTCTCAAACTCCAATTGATCCATAAAATGCTTCAAATCATAACC 600
Query 611 CCCAAAGCCATACCAAACATCAGTAGCTTCAA-GACCAATT-TACTGAATCCTAAACCAG 668
|||||||||||||||||||||| ||||||||| | ||| || | ||||||||||||| |
Sbjct 601 CCCAAAGCCATACCAAACATCAATAGCTTCAACG-CCAGTTCT-GTGAATCCTAAACCGG 658
Query 669 AACCGGTAGTCAATAGCTTCAATACCAATTCAGTGAATCCTAAACCGGATCCCCCGGCTG 728
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 659 AACCGGTAGTCAATAGCTTCAATACCAATTCAGTGAATCCTAAACCGAATCCCCCGGTTG 718
Query 729 GTCTTTTCATAAACCAAAGTGGAATCACTCCTGAGGCCGCCTCGGATTTCATTCCATCTT 788
| |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 719 GACTTTTCATAAACCAAAGTGGAATCGCTCCTGACGCCACCTCGGATTTCATTCCATCTT 778
Query 789 ATGAAAATGTTTGGGATGGTTTTGAAGATAACCAGCTTCCTGGTTTGGTTACGGTTTCTC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGAAAATGTTTGGGATGGTTTTGAAGATAACCAGCTTCCTGGTTTGGTTACGGTTTCTC 838
Query 849 AAGAGAGTTTAAATACAGCAAAACCGGGTACCAGTACGACCACCAAGGTAAATGATCATA 908
|||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 839 AAGATAGTTTGAATACAGCAAAACCGGGTACCAGTACCACCACCGAGGTAAATGATCATA 898
Query 909 TCAGAACCGGTATGATGCCGTGTTACTATGGTGATCAACTACTAGAAACCCCATCTACTG 968
||||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||| |||
Sbjct 899 CCAGAACCGGTATGATACCGGGTTACTATGGTGATCAATTACTAGAAATCCCATCTTCTG 958
Query 969 GTTCGGTATCGGTCTCTCCCGAGACAACCAGTTTGAACCATCCCAGTACAGCTCAACACT 1028
||||| ||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |
Sbjct 959 GTTCGATATCGGTATCTCCTGAGACAACCAGTTTGAACCATCCCGGTACGGCTCAACAGT 1018
Query 1029 CATCCGGTTCA---GATTTCCTAGAGGACTGGGAGAAGTTTCTTGATGATGAAACAAGTG 1085
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CATCCGGTTCATCAGATCTCCTAGAGGACTGGGAGAAGTTCCTTGATGATGAAACAAGTG 1078
Query 1086 ATTCTTGCTGGAAAAGTTTCTTAGACTTAACGTCACCCACATCGTCACCTGTCCCATGGT 1145
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1079 ATTCTTGCTGGAAAAGTTTCTTAGACTTAACGTCGCCCACATCGTCACCCGTCCCATGGT 1138
Query 1146 AGAACTGGATTTTGTTCGGGTCGTATACTCATAGTTTTAAAGACAATACATACACAAAGA 1205
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1139 AGAACTGGATTTTGTTCGGGTCGTATACTCA--GTTTTAAAGAAAATACATACACAAAGA 1196
Query 1206 TATT 1209
||||
Sbjct 1197 TATT 1200
Score = 115 bits (62), Expect = 8e-25
Identities = 79/86 (92%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 1261 ATATTTTCTTGTAAAGGAATTCTTATTTGTAATTTGTTCTTATTTGGTTTGGTTGTTGTG 1320
||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1196 ATATTTTCTTGTAAAGGAA----TGTTTGT-ATTTGTTCTTATTTGGTTTGGTTGTTGTG 1250
Query 1321 TAAAGAAACACATTGTAATCACCATT 1346
|||||||||||||||||||| |||||
Sbjct 1251 TAAAGAAACACATTGTAATCCCCATT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5