BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17790.1
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946435 jgi|Araly1|946435|scaffold_702664.1 1314 0.0
> Ahg946435 jgi|Araly1|946435|scaffold_702664.1
Length=831
Score = 1314 bits (711), Expect = 0.0
Identities = 797/836 (95%), Gaps = 16/836 (2%)
Strand=Plus/Plus
Query 345 tctctctctctcGATATCGATACAAGAGAGATGGAGAAAGAAGAAGGAGAAACAACAACA 404
||||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 1 TCTCTCTCTCTCG--ATCGATACAAGAGAGATGGAGAGAGAAGAAGGAG--A-AACAACA 55
Query 405 ACGATCGGCGTTGTTCCGGCGGCGCCGGCGAAATTACCGACTCCGATATATTCTCTGAGC 464
| ||||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 56 ATGATCGGCGTTGTT---------CCGGCGAAATCAGCGACTCCGATATATTCTCTGAGC 106
Query 465 TTTTGGGAGGTCACGGCAGCTTCCGGCGTCGTTTTAGGGTTTATTTTGGGTCTTGTTTGC 524
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 107 TTTTGGGAGGTCACGGCAGCTTCCGGCGTCGTTTTAGGGTTTCTTTTGGGACTTGTTTGC 166
Query 525 GTTTATCTCACAATGCCTCAATCTGATTACAGCTTT-CTCAAGCTACCTCGTAATCTCGA 583
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 167 GTTTATCTCACAATGCCTCAATCTGATTACAG-TTTCCTCAAGTTACCTCGTAATCTCGA 225
Query 584 AGATCTTCAGATTCTTAGAGATAATCTTGAGATATACACAAGTGATTACACAGTTCAAGT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AGATCTTCAGATTCTTAGAGATAATCTTGAGATATACACAAGTGATTACACAGTTCAAGT 285
Query 644 TCTTGTTGGATATTGTCTGGTGTACGTTTTTATGCAGACGTTCATGATTCCTGGAACTGT 703
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 286 TCTTGTTGGATATTGTCTGGTCTACGTTTTTATGCAGACGTTCATGATTCCTGGAACAGT 345
Query 704 GTTCATGTCTTTGCTTGCTGGTGCTCTCTTTGGAGTTGTCAAAGGAATGGCTCTTGTTGT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GTTCATGTCTTTGCTTGCTGGTGCTCTCTTTGGAGTTGTCAAAGGAATGGCTCTTGTTGT 405
Query 764 CTCCACTGCAACAGCTGGTGCTTCCTCTTGTTATTTCCTCTCTAAGCTCATTGGTAGACC 823
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 406 CTCCACTGCAACAGCTGGTGCTTCCTCTTGTTATTTTCTCTCGAAGCTCATCGGTAGACC 465
Query 824 TTTACTCTTCTCGCTTTGGCCTGACAAGCTCGTATTCTTCCAAGATCAGGTTGCGAGAAG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TTTACTCTTCTCGCTTTGGCCTGACAAGCTCGTATTCTTCCAAGATCAGGTTGCGAGAAG 525
Query 884 AAAAGATCGGTTGCTGAATTATATGCTGTTCTTGAGGCTAACACCAACATTGCCTAACAC 943
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 526 AAAAGATCGGTTGCTGAATTATATGTTGTTCTTGAGACTAACACCAACATTGCCTAACAC 585
Query 944 TTTCATTAATGTTGCTTCTCCAATTGTTGATGTTCCTTATCATATCTTCTTCCTAGCTAC 1003
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 586 TTTCATTAATTTTGCTTCTCCAATTGTTGATGTTCCTTACCATATCTTCTTCCTCGCTAC 645
Query 1004 ATTCATCGGTCTGATTCCTGCTGCATTTGTCACTGTCCGGGCTGGGCTTGCTCTTGGAGA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATTCATCGGTCTGATTCCTGCTGCATTTGTCACTGTCCGGGCTGGGCTTGCTCTTGGAGA 705
Query 1064 GCTAAAATCATTGGGAGATCTCTATGACTTCAGCTCCATGGCGACTCTGTGTCTCATTGG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 706 GCTAAAATCATTGGGAGATCTCTATGACTTCAGCTCCATGGCGACTCTGTGTCTCATCGG 765
Query 1124 TGTGCTCTCTGTGACTCCAACCCTAATTGGCAAGAAACAAGCATAGAAGATGAAGA 1179
||||||||||||||||||||| |||||| |||||||| |||| ||||||| |||||
Sbjct 766 TGTGCTCTCTGTGACTCCAACACTAATTAGCAAGAAAAAAGCCTAGAAGAAGAAGA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48644842092
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5