BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17800.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1 2163 0.0
> Ahg493093 jgi|Araly1|493093|fgenesh2_kg.7__2526__AT4G17800.1
Length=1362
Score = 2163 bits (1171), Expect = 0.0
Identities = 1310/1371 (96%), Gaps = 33/1371 (2%)
Strand=Plus/Plus
Query 1 CTCACCTTCTCCTTCTACTTTTTATCATTTCCCTTTCTCTTCCCATTTTAGTCTTCCTAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCACCTTCTCCTTCTACTTTTTATCATTTCCCTTTCTCTTCCCATTTTAGTCTTCCTAT 60
Query 61 AACTTCTTCTCAATCCTCTCTCATATCTTTTTTCTTAGTTTAAATTTCAATAAAAT---A 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AACTTCTTCTCAATCCTCTCTCATATCTTTTTTCTTAGTTTAAATTTCAATAAAATAGAA 120
Query 118 G--aaaaaaaCATATACAAATCTACAGAGAAGAGAAGCTTTATTTTAATCTtgtgtgtgt 175
| ||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 121 GAAAAAAAAACATATACAAATCTACAGAGAAGAGAAGCTTTATTTTAATC-----T-TGT 174
Query 176 gtgtgtgtTTTATATAAtttttattttttttCAAATTAAAATCTCTTCTTTGCTTTTGAT 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 -TGTGTGTTTTATATAATTTTTATTTTTTTTCAAATTAAAATCTCTTCTTTGCTTTTGAT 233
Query 236 GTGGGCATGGCTGGTCTTGATCTAGGCACAGCTTTTCGTTACGTTAATCACCAGCTCCAT 295
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 GTGGGTATGGCTGGTCTTGATCTAGGCACAGCTTTTCGTTACGTTAATCATCAGCTCCAT 293
Query 296 CGTCCCGATCTCCACCTTCACCACAATTCCTCCTCCGATGACGTCACTCCCGGAGCCGGG 355
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 294 CGTCCCGATCTCCACCTTCACCACAATTCTTCTTCCGATGACGTCACTCCCGGAGCTGGG 353
Query 356 ATGGGTCATTTCACCGTCGACGACGAAG------ACAACAACAACAACCATCAAGGTCTT 409
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 ATGGGTCATTTCACCGTCGACGACGAAGACAACAACAACAACAACAACCATCAAGGTCTT 413
Query 410 GACTTAGCCTCTGGTGGAGGATCAGGAAGCTCTGGAGGAGGAGGAGGTCACGGCGGGGGA 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 414 GACTTAGCCTCTGGTGGAGGATCAGGAAGCTCTGGAGGAGGAGGAGGTCACGGCGGCGGA 473
Query 470 GGAGACGTCGTTGGTCGTCGTCCACGTGGCAGACCACCGGGATCCAAGAACAAACCGAAA 529
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 474 GGAGACGTCGTTGGTCGTCGTCCACGTGGCAGACCACCGGGATCGAAGAACAAACCGAAA 533
Query 530 CCTCCGGTAATTATCACGCGCGAGAGCGCAAACACTCTAAGAGCTCACATTCTTGAAGTA 589
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 CCTCCGGTGATTATCACGCGCGAGAGCGCAAACACTCTTAGAGCTCACATTCTTGAAGTA 593
Query 590 ACAAACGGCTGCGATGTTTTCGACTGCGTTGCGACTTATGCTCGTCGGAGACAGCGAGGG 649
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 594 ACAAACGGCTGCGACGTTTTCGACTGCGTTGCGACTTATGCTCGTCGGAGGCAGCGAGGG 653
Query 650 ATCTGCGTTCTGAGCGGTAGCGGAACGGTCACGAACGTCAGCATACGTCAGCCATCTGCG 709
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 654 ATCTGCGTTCTGAGCGGTAGCGGGACGGTCACGAACGTCAGCATACGTCAGCCATCTGCG 713
Query 710 GCTGGAGCGGTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGATCGTTT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 714 GCTGGAGCGGTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGGTCGTTT 773
Query 770 CTTCCTCCTCCGGCACCTCCCGGAGCAACGAGTTTGACAATTTTCTTAGCCGGAGGACAA 829
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 774 CTTCCTCCTCCGGCTCCTCCCGGAGCAACTAGTTTGACAATTTTCTTAGCCGGAGGACAA 833
Query 830 GGTCAGGTGGTTGGAGGAAGCGTTGTGGGTGAGCTTACGGCGGCTGGACCGGTGATTGTG 889
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGTCAGGTGGTCGGAGGAAGCGTTGTGGGTGAGCTTACGGCGGCTGGACCGGTGATTGTA 893
Query 890 ATTGCAGCTTCGTTTACTAATGTTGCTTATGAGAGACTTCCTTTAGAAGAAGATGAGCAG 949
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 894 ATTGCAGCTTCGTTTACTAATGTTGCTTATGAGAGACTTCCTCTAGAAGAAGATGAGCAG 953
Query 950 CAGCAACAGCTTGGAGGAGGATCTAACGGCGGAGGTAATTTGTTTCCGGAGGTGGCAGCT 1009
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 954 CAGCAACAGCTGGGAGGGGGATCTAACGGCGGAGGTAATTTGTTTCCGGAGGTTGCTGCT 1013
Query 1010 GGAGGAGGAGGAGGACTTCCGTTCTTTAATTTACCGATGAATATGCAACCAAATGTGCAA 1069
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1014 GGAGGAGGAGGAGGACTTCCGTTCTTTAATCTACCGATGAATATGCAACCAAATGTGCAA 1073
Query 1070 CTTCCGGTGGAAGGTTGGCCGGGGAATTCCGGTGGAAGAGGTCCTTTCTGATGTGTATAT 1129
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CTTCCGGTGGAAGGTTGGCCGGGGAATTCCAGTGGAAGAGGTCCTTTCTGATGTGTATAT 1133
Query 1130 ATTGATAATCATTATATATATACCGGCGGAGAAGCTTTTCCGGCGAAGAATTTGCGAGAG 1189
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1134 ATTGATAATCATTATATATATACCGGCGGAGGAGCTTTTCCGGCGAAGA-TTTGCGAGAG 1192
Query 1190 TGAAGAAAGGTTAGAAAAGCTTTTAATGGACTAATGAATTTCAAATTATCATCGTGATTT 1249
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1193 TGAAGAAAGGTTAGAAAAGCTTTTTATGGACTAATGAATTTCAAATTATCATCGTGATTT 1252
Query 1250 CGGACATTGTCTTGTTCATCATGTTAAGCTTAGGtttat-t-t-t-tt---gt-----cg 1297
||||||||||||||||||||||||||||||||||||| | | | | || || ||
Sbjct 1253 CGGACATTGTCTTGTTCATCATGTTAAGCTTAGGTTTTTCTCTGTCTTTTTGTTTTTGCG 1312
Query 1298 ttt-gtagaattttatgtttgaatccttttttttttCTGTGAAACTCTATT 1347
||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1313 TTTTGTAGAATTTTATGTTT-AATCCTTTTTATTTTCTGTGAAACTCTATT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5