BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17810.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493092 jgi|Araly1|493092|fgenesh2_kg.7__2525__AT4G17810.1 1225 0.0
> Ahg493092 jgi|Araly1|493092|fgenesh2_kg.7__2525__AT4G17810.1
Length=817
Score = 1225 bits (663), Expect = 0.0
Identities = 772/822 (94%), Gaps = 17/822 (2%)
Strand=Plus/Plus
Query 1 CCCATCTTCTTCTTATTCTTCATCTTCTACTGAGATTTCTCtttttttttCaaaaaaaaC 60
||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1 CCCATCTTCTTCTTATTCTTCATCTTCTACTGAGATTTCTC--TTACAATC-AAAAAAAC 57
Query 61 -TCATCCTTGAATGAACGGTGGTGCATGGATGTGGAACCCTAACAAAATTGAAGAATTGG 119
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 TTCATCCTTGAATGAACGGTGGTGCATGAATGTGGAACCCTAACAAAATTGAAGAATTGG 117
Query 120 AGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCT 177
Query 180 CTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTT 237
Query 240 CTGCTCAAGCCTTAGGCGGTCACATGAATGTCCACCGCCGTGACCGCGCCTCATCTAGGG 299
||||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 238 CTGCTCAGGCCCTAGGCGGCCACATGAATGTTCACCGCCGTGACCGCGCTTCATCTAGGG 297
Query 300 CTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCA 359
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 298 CTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGCGGGACGTTACTCA 357
Query 360 ATTCTTGTGCTCCGCCGTTGCCTACAACGACACTTATAATACAATCCACGGCGAGTAACA 419
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 358 ATTCTTGTGCTCCACCGTTGCCTACAACGACACTTATAATCCAATCCACAACGAGTAACA 417
Query 420 TTGAAGGTTTGTCCCATTTCTACCAA-CTGCAAAACCCTAGTGGCATTTTTGGTAATTCT 478
|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 418 TTGAAGGTTTATCCCATTTCTACCAATC-GCAAAACCCTAGTGGCATTTTTGGTAATTCC 476
Query 479 GGTGACATGGTGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCA 538
||||| || ||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 477 GGTGATATAGTGAATCGTTATGGCACGACTTCGTTTCCTTCGAGCAACCTTCCGTTTTCA 536
Query 539 ATGTTGAATTCTCCAGTAGAAGTTCCTCCTCGGCTTATTGAATATTCGACAGGAGATGAT 598
| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 537 GTCTTGAATTCTCCAGTAGAAGCTCCTCCTCGGCTTATAGAATATTCGACAGGAGATGAT 596
Query 599 GAGAGCATTGGCTCGATGAAAGA-AGCGACAGGAACATCAGTGGATGAGCTTGATCTTGA 657
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 597 GAGAGCATTGGCTCGATGAAAGAGA-CGACAGGAACATCAGTGGATGAGCTTGATCTTGA 655
Query 658 ACTTCGGCTAGGGCACCATCCACCGTGACATTTCATTTTCATGACCCACTCGA-G----G 712
|||||| ||||||||| ||||||| ||||||||| |||||||||||||||||| | |
Sbjct 656 ACTTCGACTAGGGCACAATCCACCATGACATTTCCTTTTCATGACCCACTCGAAGTCTCG 715
Query 713 ---CTTTCACATTAATATCTATT-CATACACAGGTTCTTTAAATCTTAATTTACATGTTG 768
|||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 716 AAGCTTTCACATTAATATCCATTTCATACACAGGTTCTTTAAATCGTAATTTACATGTTG 775
Query 769 TTGTTAAATTCTGAATTCAATTTGGCTTGAATTGTGTATCAC 810
||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGTTAAATTCTGAATTCAATTTGGCTTGAATTGTGTATCAC 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5