BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17830.2
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493091 jgi|Araly1|493091|fgenesh2_kg.7__2524__AT4G17830.1 2318 0.0
> Ahg493091 jgi|Araly1|493091|fgenesh2_kg.7__2524__AT4G17830.1
Length=1574
Score = 2318 bits (1255), Expect = 0.0
Identities = 1449/1539 (94%), Gaps = 28/1539 (2%)
Strand=Plus/Plus
Query 49 CTTATTAGTTTTGTTTGCAAA-CCCCAAAAGAAAAA--ACATCTTTGGTGTAACAAAAAT 105
|||||| |||||||||||||| | | |||| ||||| |||||||||||| ||| |||
Sbjct 1 CTTATTTGTTTTGTTTGCAAATCACAAAAAAAAAAACCACATCTTTGGTG---CAACAAT 57
Query 106 GGCTTCGTCTTCCAAAGCACTGATCGAATCCATAGGCTCTCTTGACAAAGACTCATACGT 165
|||||||| ||||||||||||| | | || ||||||||||||||||||||||||||||||
Sbjct 58 GGCTTCGTATTCCAAAGCACTGGTTGGATTCATAGGCTCTCTTGACAAAGACTCATACGT 117
Query 166 TTCTCTCTTATCAAAACTCATAGGCGAATCTAAATTCGTCCAGAACAATCCGCCGGAGCT 225
||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct 118 TTCTCTCTTATCAAAACTCATCGGCGAGTCAAAATTCGTCCAGAACAATCCTCCGGAGCT 177
Query 226 CATCCCTCAAGAGGACCTAATCGTCAAACACGTCCTTGACTCTCTCCGTCCTTATAGCAC 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 CATCCCTCAAGAGGACCTAATCGTCAAACACGTCCTTGAGTCTCTCCGTCCTTATAGCAC 237
Query 286 AGAAACTGGTGGTGGTCCTCTGGTGATCAATCATGTCGCGTATCATTCAGGTAGAGGTAA 345
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 238 AGAAACTGGTGGTGGTCCTCTGGTGATCAATCATGTGGCGTATCATTCAGGCAGAGGTAA 297
Query 346 TCTCATCGTTGAGTACCCAGGATCTGTTCCCGGAAAGATCTTGTCTTTCGTCGGAATGCA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCTCATCGTTGAGTACCCAGGATCTGTTCCCGGAAAGATCTTGTCTTTCGTCGGAATGCA 357
Query 406 TATGGACGTCGTCACTGCGAATCCTGATGATTGGGAATTTGATCCTTTCTCGCTAAGCAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATGGACGTCGTCACTGCGAATCCTGATGATTGGGAATTTGATCCTTTCTCGCTAAGCAT 417
Query 466 AGATGGTGATAAGCTTCGTGGTCGTGGGACAACAGATTGTCTTGGTCACGTTGCTCTTGT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGATGGTGATAAGCTTCGTGGTCGTGGGACAACAGATTGTCTTGGTCACGTTGCTCTTGT 477
Query 526 CACTGAACTCATGAAGAAACTCGGGCAAGCCAAACCGGCGTTGAAATCAACGGTGGTGGC 585
||| ||||||||||||| |||||||||| | |||||||| |||||||||||||||||||
Sbjct 478 CACCGAACTCATGAAGAGACTCGGGCAAACTAAACCGGCACTGAAATCAACGGTGGTGGC 537
Query 586 GGTTTTCATCGCTAGCGAAGAGAACTCTTCCATTCCTGGTGTTGGTGTGGACATGCTGGT 645
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTTTTCATCGCTAGTGAAGAGAACTCTTCCATTCCTGGTGTTGGTGTGGACATGCTGGT 597
Query 646 GAAAGACAAACTTCTTGATAAGCTCAAATCCGGACCCTTGTTAGTTTCCATTCTGTATTG 705
|||||||||||||||||||||||||||||| | | | ||| | |||||||
Sbjct 598 TAAAGACAAACTTCTTGATAAGCTCAAATCC-G------G--A----CCA-T-TGTATTG 642
Query 706 GATTGATACAGCGGATAAGCAGCCGTGTGTTGGAACTGGGGGTATGATACCATGGAAGCT 765
||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 643 GATTGATACGGCGGATAAGCAGCCGTGTGTTGGAACTGGCGGTATGATACCGTGGAAGAT 702
Query 766 TCAGTTTACTGGAAAGCTTTTCCATAGCGGTTTAGCTCACAAGGCGATTAACGCGATGGA 825
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 703 TCATTTTACCGGAAAGCTTTTCCATAGCGGTTTAGCTCACAAGGCGATTAACGCAATGGA 762
Query 826 GTTAGCAATGGAAGGGCTTAAGGAAATCCAAGCTCGGTTCTACAGAGACTTTCCGCCTCA 885
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 763 GTTAGCAATGGAAGGGCTGAAGGAAATCCAAGCCCGGTTCTATAGAGACTTTCCGCCTCA 822
Query 886 CCCACAAGAGGAAGTTTATGGTTTTGCAACACCATCCACCATGAAGCCAACACAGTGGTG 945
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 823 CCCACAAGAGAAAGTTTATGGTTTTGCAACACCATCCACCATGAAGCCTACACAGTGGTC 882
Query 946 TTATCCAGCAGGTGGAATCAACCAAATCCCCGGAGAATGTACTGTTTCG-GGTGATGTCA 1004
|||||||||||| ||||||||||||||||| ||||||||||| |||| | ||||||||||
Sbjct 883 TTATCCAGCAGGCGGAATCAACCAAATCCCTGGAGAATGTACCGTTT-GCGGTGATGTCA 941
Query 1005 GGTTGACTCCTTTCTATGACGTGAAGGAAGTGATAACGAAGTTGCAAGAGTATGTTGACG 1064
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGTTAACTCCTTTCTACGAAGTGAAGGAAGTGATAACGAAGTTGCAAGAGTATGTTGACG 1001
Query 1065 ACATAAACGGTAACATAGAGAGGCTCGAAACCCGTGGTCCTGTTTCAAAATATGTCTTAC 1124
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ACATAAACAGTAACATTGAGAAGCTCGAAACCCGTGGTCCTGTTTCAAAATATGTCTTAC 1061
Query 1125 CAGATGAGAATTTACGGGGAAGGCTCACGTTAAGTTTTGATGAAGCATCAGCTGGAGTTG 1184
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1062 CAGACGAGAATTTACGGGGAAGGCTCACGTTAAGCTTTGATGAAGCATCAGCTGGAGTTG 1121
Query 1185 CGTGTAATCTTGATTCTCCCGGCTTTCACGTTCTATGCAAAGCAACCGAAGAAGTTGTTG 1244
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1122 CGTGTAATCTTGATTCCCCCGGCTTTCATGTTCTATGCAAAGCAACCGAAGAAGTTGTTG 1181
Query 1245 GACACGTGAAGCCTTACTCGATCACCGGTACTTTACCTCTAATCCGAGACCTCCAGGATG 1304
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1182 GACACGTGAAACCTTACTCGATCACCGGTACTTTGCCTCTAATCCGAGACCTCAAGGATG 1241
Query 1305 AAGGTTTTGATGTGCAAACTTCAGGATACGGTCTCATGGCTACATATCATGCAAAGAACG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AAGGTTTTGATGTGCAAACTTCAGGATACGGTCTCATGGCTACATATCATGCAAAGAACG 1301
Query 1365 AATACTGCCTTCTTACAGACATGTGCCAAGGCTTTGATGTCTTCATCAGGATCATTTCTC 1424
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1302 AATACTGCCTTCTTACAGACATGTGCCAAGGCTTTGATGTCTTCGTTAGGATCATTTCTC 1361
Query 1425 AACTTGAA---CAAGTA-TAAAATCAGATGGAAGATCATAAAATAAAAGCTTCACATAGC 1480
|||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1362 AACTTGAAGAACAAG-ACTAAAATGAGATAGAAGATCATAAAATAAAAGCTTCACATAGC 1420
Query 1481 TACTCTCTTATTAACTAAATGGTTCTATACATTTACTTTGCTTCTATCTATTTGTACAAG 1540
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TACTCTCTCATTAACTTAATGGTTCTATACATTTACTTTGCTTCTATCTATTTGTACAAG 1480
Query 1541 TCAATGGTGGCTCAATACTTCAGACACTTTACAAAATTT 1579
|||||||||||||||||| | ||||||||||||||||||
Sbjct 1481 TCAATGGTGGCTCAATACATAAGACACTTTACAAAATTT 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59154150485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5