BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17840.1
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946431 jgi|Araly1|946431|scaffold_702660.1 1989 0.0
Ahg493091 jgi|Araly1|493091|fgenesh2_kg.7__2524__AT4G17830.1 305 6e-82
> Ahg946431 jgi|Araly1|946431|scaffold_702660.1
Length=1317
Score = 1989 bits (1077), Expect = 0.0
Identities = 1244/1323 (94%), Gaps = 17/1323 (1%)
Strand=Plus/Plus
Query 264 TGAGAGTTGTCGCATGTTATAAATGGGTCTTCCTTTATTGTCTTGTAGTTCCACAAGAGT 323
|||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 TGAGAGCCGTCGCATGTTATAAATGGGTCTTCCTTTGTTGTCTTGTAGTACCACAAGAGT 60
Query 324 CACtctctcttcttcttcttcttcatcttGGTGTAGTAGCGGAAGCGGTGGATTT---AG 380
|| ||||| || ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 61 CA--CTCTC-TCGTCTTCTTCTTCGTCTTGGTGTAGTAGCGGAAGCGGTGGATTTCGGAG 117
Query 381 --G--A--GTAGTTCTAAGCTTTTCGATTCTCCGGCGTGTTCGAGATCGGATTTGAAGAA 434
| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 118 TAGTAATTGTAGTTCTAAGCTTTTCGATTCTCCGGCGAGTTCGAGATCGGATTTTAAGAA 177
Query 435 ACGTAGCGGGAAGAGAAATTCACGGTTAAACGGACTTTCGTTAGAGAAATTAAG-GTCGA 493
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 178 ACGTAACGGGAAGAGAAATTCACGGTTAAACGGACTTTCGTTAGAGAAATT-AGAGTC-A 235
Query 494 -TTAAAGCATCGTCGTCTTCCGCTGGACAGAGCAGTAGCGAAGTGATCGACGACGGAGAT 552
||| ||| |||||| | ||||||||||||||||| | |||||||||||||||||||||
Sbjct 236 GTTACAGCGTCGTCGCCATCCGCTGGACAGAGCAGCGGTGAAGTGATCGACGACGGAGAT 295
Query 553 GCGGCGGCGCGTGGTTTAGCTGTTACTTCAGGAGATGTAACGTCGGTTGGAAGTTTCAGT 612
||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 296 ACGGCGGCGCGTGGTTTAGCTGTTTCTTCTGGAGATGTAACGTCGGTGGGAAGTTTCAGT 355
Query 613 AGCGGCGAATTTGTTGGTGCTGGTAGTGGCGGTTTAGCTGGACCTTCAGGTGAGGTTACT 672
||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct 356 AGCGGCGAATTTGTTGGCGCCGGTAGTGGTGGTTTAGCTGGACCTTCTGGTGAGGTTACA 415
Query 673 TCCGTCGGCGAGTTTGTCGGCGGAAGCGGCGGGGATTTTAAGGATTGGGATAAGATCGGT 732
||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||| |
Sbjct 416 TCCGTCGGCGAATTTGTCGGCGGAAGCGGCGGAGATTTTAAAGCTTGGGATAAGATCGAT 475
Query 733 GCTATTGTTAGGTTGAGTTATGGAATCGGAATATATTGTGGAATGGCAGTAGCAGGAAGA 792
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 476 GCTATTGTTAGGTTGAGTTATGGAATCGGAATATATTGTGGAATGGCTGTAGCAGGAAGA 535
Query 793 TTCATATGTGAAGTAGCAGGAATAGATTACACAGGAGGTTTTAATGCTTCTTTAGATACA 852
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 536 TTCATATGTGAAGTAGCAGGAATTGATTACACAGGAGGTTTTAATGCTTCTTTGGATACA 595
Query 853 ATTATCGCTGGACTTGGTTATGCTTCTCCACCTATTATGGCTCTTCTCTTCATTCTTGAT 912
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 596 ATTATTGCTGGACTTGGTTATGCTTCTCCTCCAATTATGGCTCTTCTCTTCATTCTTGAT 655
Query 913 GATGAAGTTGTTAAATTGTCGCCTCATGCTCGTGCCATTAGAGATGTTGAAGATGATGAG 972
||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 656 GATGAAGTTGTGAAATTGTCTCCGCATGCTCGTGCCATTAGAGATGTTGAAGATGAGGAG 715
Query 973 CTTCGAGGTTTCTTTCAAGGAATGTCAGCTTGGCAGTTTATCTTAGTAGTTACTGCAAGT 1032
||| |||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 CTTAGAGGCTTCTTTCATGGAATGTCAGCTTGGCAGTTTATCTTAGTAGTTGCTGCAAGT 775
Query 1033 TCAGTTGGAGAAGAGCTCTTCTATCGTGCTGCGTTTCAGGGTGCACTAGCTGATATATTC 1092
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 TCAGTTGGAGAAGAGCTCTTCTATCGCGCTGCGTTTCAGGGTGCACTAGCTGATATATTC 835
Query 1093 CTAAGGGGCACAGATCTTATCTCGGATTCTCGAGGAATGGTTGCTTTGACTGGACTCTTG 1152
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 836 CTAAGGGGAACAGATCTCATCTCGGATTCTCGAGGAATGGTCGCTTTGACTGGACTCTTG 895
Query 1153 CCACCATTTGTACCATTTGCTCAAGTATTTGCAGCCACTATTACAGCCGCTCTCACTGGT 1212
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 CCACCATTTGTACCATTTGCTCAAGTCTTTGCAGCCACTATTACAGCCGCTCTCACTGGT 955
Query 1213 TCTCTCTACTACATAGCTGCTTCCCCTAAAGATCCAACTTATATAATGGCACCGGTCTTG 1272
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TCTCTCTATTACGTCGCTGCTTCCCCTAAAGATCCAACTTATATAATGGCACCGGTCTTG 1015
Query 1273 AAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGCGTGGTATGAGCGAAGA 1332
||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct 1016 AAAACTCGCTCTGCCCGTGATGAGCTGAAGAAGTTATTTGCAGCGTGGTACGAGCGAAGA 1075
Query 1333 CAGATGAAGAAAATCTACTCTCCTCTTCTTGAAGGGCTTTTGGGTCTATACCTCGGCTTT 1392
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1076 CAGATGAAGAAAATCTACTCTCCTCTTCTCGAAGGGCTTTTGGGTCTATACCTCGGCTTT 1135
Query 1393 GAATGGATTCAGACAAACAATCTTCTTGCTCCTATCATCACACATGGTATATACTCAGCC 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 GAATGGATTCAGACAAACAATCTTCTTGCTCCTATCATCACACATGGTATATACTCTGCC 1195
Query 1453 GTTGTATTGGGTAATGGTCTCTGGAAACTACACCATCATCAGCAAAGACTCCGGCTACGT 1512
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GTTGTATTGGGGAATGGTCTCTGGAAACTACACCATCATCAGCAAAGACTCCGGCTACGC 1255
Query 1513 GTTCAGAAACTTGAAACTGAAGGTGACAACAACTCAAGATAGATAAATAACTGTATAAAA 1572
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1256 GTTCAGAAACTTGAAACTGAAGGTGACGACAACTCAAGATAGATAAATAACTGAATAAA- 1314
Query 1573 CAT 1575
|||
Sbjct 1315 CAT 1317
> Ahg493091 jgi|Araly1|493091|fgenesh2_kg.7__2524__AT4G17830.1
Length=1574
Score = 305 bits (165), Expect = 6e-82
Identities = 182/190 (96%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 1533 AGGTGACAACAACTCAAGATAGATAAATAACTGTATAAAACATTATCCTTTGTTTTAAAT 1592
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1574 AGGTGACGACAACTCAAGATAGATAAATAACTGAAT-AAACATTATCCTTTGTTTTAAAT 1516
Query 1593 TTTGTAAAGTGTCTGAAGTATTGAGCCACCATTGACTTGTACAAATAGATAGAAGCAAAG 1652
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TTTGTAAAGTGTCTTATGTATTGAGCCACCATTGACTTGTACAAATAGATAGAAGCAAAG 1456
Query 1653 TAAATGTATAGAACCATTTAGTTAATAAGAGAGTAGCTATGTGAAGCTTTTATTTTATGA 1712
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1455 TAAATGTATAGAACCATTAAGTTAATGAGAGAGTAGCTATGTGAAGCTTTTATTTTATGA 1396
Query 1713 TCTTCCATCT 1722
||||| ||||
Sbjct 1395 TCTTCTATCT 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64677236010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5