BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G17850.1

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329742 jgi|Araly1|329742|fgenesh1_pm.C_scaffold_7001969           630    3e-180


> Ahg329742 jgi|Araly1|329742|fgenesh1_pm.C_scaffold_7001969
Length=585

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 491/561 (88%), Gaps = 20/561 (4%)
 Strand=Plus/Plus

Query  1    ATGACATCGTATGTGCAGCATGATGGTGATGGCGATAGTGTTAAAAATGCAGAAGTTGCA  60
            ||||||||||||||||||| |||   |||   |||||||||| |||||  ||||||||||
Sbjct  1    ATGACATCGTATGTGCAGCCTGA---TGA---CGATAGTGTTGAAAATAAAGAAGTTGCA  54

Query  61   GAGGCTATA---CTCAATGATAACAATGAAC-TGTCTCATATTGAGCGAGAAATAACTGT  116
            || ||||||   ||  |||||||||||| || |||||||||||||| |||||||||||||
Sbjct  55   GAAGCTATATTCCTTGATGATAACAATG-ACTTGTCTCATATTGAGGGAGAAATAACTGT  113

Query  117  TTGTGATACATGTGGTGAT-CAAGGATATGAATATTTACTTGTGATCTGTTGCAACTGCG  175
            |||||||||||||||| || ||||||| |||| ||||||||||||| |||||||||||| 
Sbjct  114  TTGTGATACATGTGGT-ATTCAAGGATTTGAAGATTTACTTGTGATATGTTGCAACTGCA  172

Query  176  GAGTTGGTGCAGAACATACTTATTGCATGATGGAAAAAATAGATAAGGTTCCCGATAGTT  235
             ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  173  AAGTTGGTGCTGAACATACTTATTGCATGATGAAAAAAATAGATAAGGTTCCCGATAATT  232

Query  236  GGTCTTGCTATGACTGCACTaaagaggtagatgaaatgcgagaagaaaaaggaaatgaag  295
            ||||||||||||| |||||| ||||| |||||| ||||||||||||||| ||||||||||
Sbjct  233  GGTCTTGCTATGAATGCACTGAAGAGTTAGATGGAATGCGAGAAGAAAAGGGAAATGAAG  292

Query  296  aaaccagctctagaaaaaggaaagCAGATGCTGTTACTAATT-TTTTCGAGACAGCAGAA  354
            |||||| ||||||||||||||||||||||||||||| | ||| |||| ||| || |||||
Sbjct  293  AAACCAACTCTAGAAAAAGGAAAGCAGATGCTGTTATTGATTATTTT-GAGGCATCAGAA  351

Query  355  AAAACATCATCTCAAAGACAATTTGATTTGTTGAACACAGAAAGTTATCCTAAAATTAGA  414
            |||| ||||||||||||||||  | |||||||||| ||| ||||| ||||||||||  ||
Sbjct  352  AAAATATCATCTCAAAGACAAACTAATTTGTTGAATACACAAAGTAATCCTAAAATCGGA  411

Query  415  AATTTTGATTTGAACGTGGACCCTAACATAAAACTAGGTGAAATCTCTGGTATAGATATG  474
             || || | ||||||||||||| |||||||||||||| |||| || ||||||||||||| 
Sbjct  412  GATGTTAACTTGAACGTGGACCTTAACATAAAACTAGATGAAGTCCCTGGTATAGATATT  471

Query  475  GACAAAGTACATGACATAGATCT-AA-ATAGGGATCCTAACATAGAACTAGGTGAAGTCC  532
             ||||||| |||| ||||||||| || ||||  |||||||||| |||||||||||||| |
Sbjct  472  AACAAAGTCCATGGCATAGATCTGAACATAG--ATCCTAACATGGAACTAGGTGAAGTTC  529

Query  533  CTGGTATAGATATAAAC-AAA  552
            ||||||||||||| ||| |||
Sbjct  530  CTGGTATAGATATGAACGAAA  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20604018060


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5