BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17860.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329741 jgi|Araly1|329741|fgenesh1_pm.C_scaffold_7001968 1530 0.0
> Ahg329741 jgi|Araly1|329741|fgenesh1_pm.C_scaffold_7001968
Length=1071
Score = 1530 bits (828), Expect = 0.0
Identities = 997/1078 (92%), Gaps = 14/1078 (1%)
Strand=Plus/Plus
Query 36 ATGGCTTCGTACTGTTTATTATA-CATCTTCATATATCTTTGTTCTTATCACATTGCTCA 94
|||||||||||||| |||||||| | ||||||| ||||||| ||||| ||| ||||||||
Sbjct 1 ATGGCTTCGTACTGGTTATTATATC-TCTTCATCTATCTTTTTTCTTGTCATATTGCTCA 59
Query 95 AACAGTTCAGAAAGAAATAGAATACGAATGTGTGGATATCTATAAGCAACCTGCATTTCA 154
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 AACAGTTCAGGAAGAAATAGAATACGAATGTGTAGATATCTATAAGCAACCTGCATTTCA 119
Query 155 ACATCCATTGATGAAAGATCACCAAATCCAGATGAGACCAAGTGTCGATTTTCAAACCAC 214
||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 120 ACATCCATTGATGAAGGATCACCAAATCCAGATGAGACCAAGTGTCGAGTTTCAAGCCAT 179
Query 215 GGTATCGACGGAGCCGGAAACATCAGATTTATTCACTGGTAAAGCAGAAGAAAGGTGTCC 274
| |||||| ||| | |||||||||||||| ||||| ||| || | ||||||||||||||
Sbjct 180 GCTATCGATGGATTCAGAAACATCAGATTTGTTCACCGGTGAATCTGAAGAAAGGTGTCC 239
Query 275 TAAAGGACAAGTACCAATTCACATACCGCAAATTAACTATACTAATGACTTT-GTCCAAC 333
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 240 TAAAGGACAAGTACCAATTCACATACCGCAAATTAACTATACTAATAACTTTAG-CCAGC 298
Query 334 CGAATAGAATAATTACAGAAGCCAATCTACATTATGCAATTATTAGACCATTTGAGAATT 393
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGAAGAAAATAATTACAGAAGCCAATCTACATTATGCAATTATTAGACCATTTGAGAATT 358
Query 394 ACACAAAGATATGGGGTGGAGCGCAAGCGGTTTTCAATATTTACAAACCACGAGTATT-G 452
||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 359 ACACAAAGAGATGGGATGGAGCGCAAGCGGTGTTCAATATTTACAAACCAGGAGTATTGG 418
Query 453 AGAAATCAATTTAGTAAAGCTTGGATTTGGCTAAATCACAGAGAAAAAGATGTAATAAGC 512
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 A-AAATCAATTTAGTAAAGCTTGGATTTGGCTAAATCACAGAGAAAAAGATGTAATAAGC 477
Query 513 AGCATCCAATTTGGTTGGGCAGTGCATATAGGATTGTACCGAGATGATCGCCCAAGGTTA 572
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 478 AGCATCCAATTTGGTTGGGCTGTGCATACAGGATTGTACCGAGATGATCGTCCAAGGTTA 537
Query 573 ACAACATACTGGATATCAAATCGACACCAAAACGGATGCTACAATG-TGTTATGTCGAGG 631
||||||||||||||||||| | |||||| ||||||||||||||| | | |||||||||||
Sbjct 538 ACAACATACTGGATATCAAGTAGACACCCAAACGGATGCTACAACGCT-TTATGTCGAGG 596
Query 632 AGGATATGTCCAAGTCCATAAGACAATCTACCCCGGTATGGCTTACAATAAAATTAGTGT 691
||| ||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 597 AGGCTATGTCCAAGTCCATAAAACAATCTACCCCGGTATGGTTTACCATAAAGTTAGTA- 655
Query 692 CTT-AGGCAAAAGACAGTCCACTGCTCATCTTCTCGTCGGTCAGGATTCCAGAACAAAAA 750
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTTTAGGCAAAAGACAGTCCACTGCTCATCTTCTCGTCGGTCAGGATTCCAGAACAAAAA 715
Query 751 ACTGGTTATTGATGACGAGAAAAACCTTGATAGGCTATTGGCCCTATCAAATTTTTTCGA 810
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 716 ACTGGTTATTGATGACGAGATCAACCTTGATAGGCTATTGGCCTTATCAAATTTATTCGA 775
Query 811 TGCAAGGAGTATCACAAGTTTTCTTCGGCGGATATACAGGGGGGTTAGCTGGAGCTATCA 870
||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||
Sbjct 776 TGCAAGGAGCATCACAAGTTTTATTCGGCGGGTATACAGGGGGGCTAGCTGGAGCTACCA 835
Query 871 GCCCTCCTATGGGGGCAGGAACTTTTCCGAGACAAGTAGGATATCGAAACAAGTTTGCAT 930
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |||
Sbjct 836 GCCCTCCTATGGGGGCAGGGACTTTTCCGAAAGAAGTAGGATATCGAAACAAGTTTTCAT 895
Query 931 GTTTCATGAAACAACTTAAGTATTTTGAGGATAAAAGACTAGTAGATATTGATTCGAACG 990
||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
Sbjct 896 GTTTCATGAAACAACTTAAGTGTTTTGAGGACAAAAGACTAGTAGATATTGACTCGAATG 955
Query 991 AGTTTGAGGAATATGTGGATAGTCCAAAGTGTTACGATGTATGGTATCGCGAGTTTGAAA 1050
||||||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||
Sbjct 956 AGTTTGAGGAATATGTGGATAGTCCGAAGTGTTATGATGTATGGTTTCGTAAGTTTGAAA 1015
Query 1051 TACG--AAGTGGAGAGATGCTAACCTTCGGTGGACCTGGTGGACAATGTGGTATCTAA 1106
|| | ||| | ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1016 TAGGCCAAG-G-AGAGATGCTCACCTTCGGTGGACCTGGTGGACAGTGTGGTATCTAA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5