BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17870.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946428 jgi|Araly1|946428|scaffold_702657.1 959 0.0
Ahg494299 jgi|Araly1|494299|fgenesh2_kg.8__115__AT5G46790.1 372 3e-102
> Ahg946428 jgi|Araly1|946428|scaffold_702657.1
Length=618
Score = 959 bits (519), Expect = 0.0
Identities = 563/584 (96%), Gaps = 4/584 (1%)
Strand=Plus/Plus
Query 112 ACCATGCCTTCGGAGTTAACACCAGAAGAACGATCGGAACTAAAA-AACTCAATCGCCGA 170
||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 18 ACCATGCCTTCCGAGTTAACACCAGAAGAACGATCGGAACTAAAACAA-TCAATCGGCGA 76
Query 171 GTTCCACACATACCAACTCGATCCAGGAAGCTGTTCATCACTCCACGCGCAACGAATCCA 230
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 77 GTTCCACACATACCAACTCGGTCCAGGAAGCTGTTCTTCACTCCACGCGCAACGAATCCA 136
Query 231 CGCGCCTCCGGAACTCGTCTGGTCAATCGTAC-GACGATTCGACAAACCACAAACATACA 289
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 137 CGCGCCGCCGGAACTCGTCTGGTCAATCGT-CAGACGATTCGACAAACCACAAACATACA 195
Query 290 AACACTTCATCAAATCCTGCTCCGTCGAACAAAACTTCGAGATGCGCGTCGGATGCACGC 349
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 196 AACACTTCATCAAATCCTGCTCCGTCGAACAAAACTTCCAGATGCGCGTCGGATGCACGC 255
Query 350 GCGACGTGATCGTCATCAGTGGATTACCGGCGAACACATCAACGGAAAGACTCGATATAC 409
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 256 GCGACGTGATCGTCATCAGTGGATTACCGGCCAACACATCAACGGAAAGGCTCGATATAC 315
Query 410 TCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGCGAACATAGGCTGACGA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGCGAACATAGGCTGACGA 375
Query 470 ATTACAAATCCGTTACGACGGTGCATCGGTTCGAGAAAGAGAATCGGATCTGGACGGTGG 529
|||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 376 ATTACAAATCGGTGACGACGGTGCATAGGTTCGAGAAAGAGAATCGGATCTGGACGGTGG 435
Query 530 TTTTGGAATCTTACGTCGTTGATATGCCGGAAGGTAACTCGGAGGATGATACTCGTATGT 589
|||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 436 TTTTGGAATCGTATGTTGTTGATATGCCGGAAGGTAACTCGGAGGATGATACACGTATGT 495
Query 590 TTGCTGATACGGTTGTGAAGCTTAATTTGCAGAAACTCGCGACGGTTGCTGAAGCTATGG 649
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 496 TTGCTGATACGGTGGTGAAGCTTAATTTGCAGAAACTCGCGACGGTTGCGGAAGCTATGG 555
Query 650 CTCGTAACTCCGGTGACGGAAGTGGTTCTCAGGTGACGTGAAAA 693
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CTCGTAACTCCGGTGACGGAAGTGGTTCTCAGGTGACGTGAAAA 599
> Ahg494299 jgi|Araly1|494299|fgenesh2_kg.8__115__AT5G46790.1
Length=800
Score = 372 bits (201), Expect = 3e-102
Identities = 403/499 (81%), Gaps = 20/499 (4%)
Strand=Plus/Plus
Query 160 TCAATCGCCGAGTTCCACACATACCAACTCGATC-CAGGAAGCTGTTCATCACTCC-ACG 217
||||||||||||||||||||||||||||||| || | || | || ||||| ||| | |
Sbjct 128 TCAATCGCCGAGTTCCACACATACCAACTCGGTCAC-GGCCGTTGCTCATCTCTCTTA-G 185
Query 218 CGCAACGAATCCACGCGCCTCCGGAA-CTCGTCTGGTCAATCGT-ACGACGATTCGACAA 275
| ||||| ||||||||||| |||||| | |||||||| |||| | || |||||||||
Sbjct 186 CTCAACGGATCCACGCGCCGCCGGAAACA-GTCTGGTCCGTCGTGA-GAAGATTCGACAG 243
Query 276 ACCACAAACATACAAACACTTCATCAAATCCTGCTCCGTCGAACAAAACTT-CGAGATGC 334
|||||| | |||||||||||||||||| ||| | ||| ||| || || ||||||||
Sbjct 244 ACCACAGATTTACAAACACTTCATCAAAAGCTGTTTCGT-GAAGGAAGGTTTCGAGATGC 302
Query 335 GCGTCGGATGCACGCGCGACGTGATCGTCATCAGTGGATTACCGGCGAACACATCAACG- 393
| || ||||||||||||||||||| ||| || ||||||||||||||||| ||||| | |
Sbjct 303 GAGTGGGATGCACGCGCGACGTGAACGTGATAAGTGGATTACCGGCGAATACATCGA-GA 361
Query 394 GAAAGACTCGATATACTCGACGACGAACGGAGAGTTACCGGATTCAGTATCATCGGAGGC 453
|| ||| | ||| | | ||||| || |||||||| || || || ||||||| ||| ||
Sbjct 362 GAGAGATTAGATCTGTTGGACGATGATCGGAGAGTGACTGGGTTTAGTATCACCGGTGGT 421
Query 454 GAACATAGGCTGACGAATTACAAATCCGTTACGACGGTGCATCGGTTCGAGAAAGA-GAA 512
||||||||||||| |||||| ||||| || |||||||| ||| | || |||||||| ||
Sbjct 422 GAACATAGGCTGAGGAATTATAAATCGGTGACGACGGTTCATAGATTTGAGAAAGAAGA- 480
Query 513 TCGGATCTGGACGGTGGTTTTGGAATCTTACGTCGTTGATATGCCGGAAGGTAACTCGGA 572
|||||||||||| || ||||||||||| ||||| |||||| | ||||||||||| |||||
Sbjct 481 TCGGATCTGGACCGTTGTTTTGGAATCGTACGTTGTTGATGTACCGGAAGGTAATTCGGA 540
Query 573 GGATGATACTCGTAT-GTTTGCTGATACGGTTGTGAAGCTT-AAT-TTGCAGAAACTCGC 629
||| ||||| | || |||||| ||||||||| | | | || ||| || |||||||| ||
Sbjct 541 GGAAGATACGAG-ATTGTTTGCAGATACGGTTATTA-GATTGAATCTT-CAGAAACTTGC 597
Query 630 GACGGTTGCTGAAGCTATG 648
| || | |||||||||||
Sbjct 598 GTCGATCACTGAAGCTATG 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5