BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17880.1
Length=2221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1 2444 0.0
Ahg948265 jgi|Araly1|948265|scaffold_800152.1 292 6e-78
> Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1
Length=2103
Score = 2444 bits (1323), Expect = 0.0
Identities = 1751/1938 (90%), Gaps = 107/1938 (6%)
Strand=Plus/Plus
Query 6 AACAATCAAACCAAACA-CAAATATTTTGC-TTAAAGAACTTACTTCTCTCCTCTGTCTC 63
||||||||||||||||| | |||| ||||| ||||| ||||||||||||||||||||| |
Sbjct 1 AACAATCAAACCAAACATC-AATA-TTTGCTTTAAA-AACTTACTTCTCTCCTCTGTC-C 56
Query 64 TCACCGGAAAAACAAAAAGTCTTCTCTTTTATAACTACGTCAGAGAACTGTTATGTCTCC 123
|||||||||||||||||| || | | || | | | ||||||||||
Sbjct 57 TCACCGGAAAAACAAAAA-AAAAGTC---T-T--CT-C-T-------TTTTTATGTCTCC 100
Query 124 GACGAATGTTCAAGTAACCGATTACCATCTCAACCAATCAA-AAACGGATACAACAAATC 182
||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 101 GACGAATGTTCAATTAACCGATTACCATCTCAACCAATCAACCAACGG-TACAACAAATC 159
Query 183 TCTGGTCAACCGACGACGATGCATCGGTAATGGAAGCTTTCATCGGCGGCGGCTCCGATC 242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 160 TCTGGTCAACCGACGACGATGCATCGGTAATGGAAGCTTTCAT---CGGCGGCTCCGATC 216
Query 243 AttcttctctttttcctccacttcctcctcctcctcttcctcAAGTCAACGAAGATAATC 302
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 217 ATTCTTCTCTTTTTCCTCCACTTCCTCCTCCTCCTCCACCTCCGGTCAACGAAGATAATC 276
Query 303 TCCAGCAACGTCTCCAAGCTTTAATCGAAGGAGCAAACGAGAACTGGACTTACGCCGTGT 362
|||||||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 277 TCCAGCAACGACTCCAAGCTTTAATAGAAGGAGCAAACGAGAGCTGGACTTACGCTGTGT 336
Query 363 TCTGGCAATCATCTCACGGTTTCGCCGGAG-A-A-Gac--------aa-caacaacaaca 410
|||||||||||||||||| ||||||||||| | | ||| || |||||||||||
Sbjct 337 TCTGGCAATCATCTCACGATTTCGCCGGAGAAGACGACGGAGTAAGAACCAACAACAACA 396
Query 411 acacaGTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAGTCTAGAA 470
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 397 ACACAACCTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAATCTAGAA 456
Query 471 AGAAGAAATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTAAGAGAGTGATTA-GA 529
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 457 AGAAGAAACCAAATCCAGCTTCTGCAGCTGAACAAGAGCATCGTAAGAGAGTGA-TACGA 515
Query 530 GAGCTCAACTCTTTAATCTCCGGTGGT-GT--AGGAGGAGGAGATGAAGCTGGAGATGAA 586
|| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 516 GAACTCAACTCTTTAATCTCCGGTGGTGGTGGAGGAGGAGGAGATGAAGCTGGAGATGAA 575
Query 587 GAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAAGGGT 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 GAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAATGGC 635
Query 647 ACTGGTTTACCTGGTCAAGCTTTCTCAAATTCAG-ACACGATTTGG-TTATCTGGTTCTA 704
|||||||||||||||||||||||||| || || | ||||||||||| || ||||| ||||
Sbjct 636 ACTGGTTTACCTGGTCAAGCTTTCTCGAACTC-GAACACGATTTGGCTT-TCTGGGTCTA 693
Query 705 ATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAA 753
Query 765 CAATGGTGTGTGTAGCGACAGAGAATGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATTC 824
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 754 CAATGGTGTGTGTAGCGACTGAGAACGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATAC 813
Query 825 ATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTCAATTTTAACAATGGTGGTG 884
||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 814 ATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTC------AAC---GGTGGTG 864
Query 885 GTGAATTTGGTTCTTGGGCGTTTAATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTT 944
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GTGAATCTGGTTCTTGGGCGTTTAATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTT 924
Query 945 TGTGGATTAGTGAACC---T-A-A-TGGTGTTGACTCTGGTCTTGTAGCTGCTCCG--G- 995
|||||||||||||||| | | | ||||||||| ||||||||||||||||||||| |
Sbjct 925 TGTGGATTAGTGAACCTAATAACACTGGTGTTGAATCTGGTCTTGTAGCTGCTCCGTTGA 984
Query 996 TGATGAATAATGGTGGAAATGACTCAACTTCTAATTCTGATTCTCAACCAATTTCTAAGC 1055
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 985 TGATGAATAATGGTGGTAATGACTCAACTTCTAATTCTGATTCTCAACCAATTTCGAAGC 1044
Query 1056 TTTGTAATGGAAGCTCTGTTGAAAACCCTAACCCTAAAGTTCTGAAATCTTGTGAAATGG 1115
|||||||||||||||||| || || || || ||||| |||||||| |||||||||
Sbjct 1045 TTTGTAATGGAAGCTCTG-TG-GAA----AA-CC--AAGTTTTGAAATCTGGTGAAATGG 1095
Query 1116 TGA-ATTTCAAGAATGGGATTGAGAATGG----TCAAG---AAGAAGATAGTA-GTAATA 1166
||| | || |||||||||||||||||||| || | ||| | | || | || |
Sbjct 1096 TGAGAGTT-AAGAATGGGATTGAGAATGGATTCTCTGGTCAAAGCCGGT-TTATGGAAGA 1153
Query 1167 AG--AAGAGATCACCGGTTTCGAATAATGAAGAAGGGATGCTTTCTTTTACCTCTGTTCT 1224
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1154 AGATAAGAGATCTCCGGTTTCGAACAATGAAGAAGGGATGCTTTCTTTTACCTCTGTTCT 1213
Query 1225 T-------C--C---AT---GTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAA 1269
| | | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TCCACGGCCTGCGAAATCCGGTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAA 1273
Query 1270 AGAAGCTGAGAGTAA-CAGAGTTGTGGTTGAACCGGAGAAGAAACCGAGGAAACGAGGGA 1328
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1274 AGAAGCTGAGAGTAATC-GAATTGTGGTTGAACCGGAGAAGAAACCGAGGAAACGAGGGA 1332
Query 1329 GAAAACCGGCGAATGgaagagaagagcctttgaatcatgtagaggcagagagacagagaa 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GAAAACCGGCGAATGGAAGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAA 1392
Query 1389 gagagaagttgaatcagagaTTCTATTCTTTAAGAGCTGTGGTTCCTAATGTGTCTAAGA 1448
|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1393 GAGAGAAGTTGAATCAGAGATTTTACTCTTTGAGAGCTGTGGTTCCTAATGTGTCTAAGA 1452
Query 1449 TGGATAAAGCTTCTCTATTAGGAGATGCTATTTCGTATATCAGTGAGCTTAAGTCTAAGT 1508
|||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||
Sbjct 1453 TGGATAAAGCTTCTCTTTTAGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCTAAGT 1512
Query 1509 TGCAAAAGGCTGAATCTGATAAAGAAGAGTTGCAGAAGCAGATTGATGTGATGAAT-AAA 1567
||| ||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||
Sbjct 1513 TGCTAAAGGCTGAATCTGATAAAGAAGAGCTGCAGAAGCAGATTGATGGGATGA-TCAAA 1571
Query 1568 GAAGCGGGAAATGCGAAAAGTTCGGTAAAAGATCGAAAATGTTTGAATCAAGAATCGAGT 1627
|| ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1572 GAGGCGGGGAATTCGAAAAGTTCGGTTAAAGATCGAAAATGTTTGATTCAAGAATCGGGT 1631
Query 1628 GTGTTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAGGATT 1687
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GTGGTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAGGATT 1691
Query 1688 CAATGTAGTAAGAGGAATCATCCTGGTGCTAAGTTCATGGAAGCACTTAAGGAGTTGGAT 1747
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1692 CAATGCAGTAAGAGAAATCATCCTGGTGCTAAATTCATGGAAGCACTCAAGGAATTGGAT 1751
Query 1748 TTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACT 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 TTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACT 1811
Query 1808 GTGAAAATGGGGAATCAGTTTTTCACGCAAGATCAACTCAAGGTTGCTCTAACGGAGAAA 1867
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||
Sbjct 1812 GTGAAAATGGGGAATCAGTTTTTCACACAAGATCAGCTCAAGGTTGCTCTAATGGATAAA 1871
Query 1868 GTTGGAGAATGTCCATGA 1885
|| |||||||||||||||
Sbjct 1872 GTCGGAGAATGTCCATGA 1889
Score = 235 bits (127), Expect = 1e-60
Identities = 143/150 (95%), Gaps = 3/150 (2%)
Strand=Plus/Plus
Query 1987 ACACAAGTTTCTCTAGTGAATGTAG-TTGTAAACTCTA-TTGTGTAAGGGTAATTTTGTA 2044
|||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||| |
Sbjct 1889 ACACAAGTTTCTCTTGTGAATGTAGTTTGTAAACTCTATTTGGGTAAGGGTAATTTTGCA 1948
Query 2045 GTACCCACTTGTTGCTATTGAATGCTTGTTAGAGAGGATTCTTAGTGTAGTATATGATTA 2104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 GTACCCACTTGTTGCTATTGAATGCTTGTTAGAGAGGATTCTTAGTGTAGTATATGATTA 2008
Query 2105 GGTTGGGGTTTGTTGTTTCATGAGATAAAT 2134
||||||||||||| ||||||||| ||||||
Sbjct 2009 GGTTGGGGTTTGTGGTTTCATGA-ATAAAT 2037
Score = 76.8 bits (41), Expect = 6e-13
Identities = 58/65 (89%), Gaps = 6/65 (9%)
Strand=Plus/Plus
Query 2161 TTTGGTTTGTTGGTGTATGTATGTAAATAAGGCTTT--T--GTTAGAAATAAGACAAATG 2216
||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 2041 TTTGG--TGTTGGTGTATGTATGTAAATAAGGCTTTAATTTGTTAGAAATAAAACAAATG 2098
Query 2217 GGACT 2221
|||||
Sbjct 2099 GGACT 2103
> Ahg948265 jgi|Araly1|948265|scaffold_800152.1
Length=1986
Score = 292 bits (158), Expect = 6e-78
Identities = 536/710 (75%), Gaps = 59/710 (8%)
Strand=Plus/Plus
Query 282 ctcAAGTCAACGAAGATAATCTCCAGCAACGTCTCCAAGCTTTAATCGAAGGAG-CAAAC 340
||||| |||||||||||| ||| || |||||||||||||||||||||||| | | |
Sbjct 166 CTCAATTCAACGAAGATACTCTTCAACAACGTCTCCAAGCTTTAATCGAATCCGCCGGA- 224
Query 341 GAGAACTGGACTTACGCCGTGTTCTGGCA-ATCATCTCACGGTTTCGCCGGAGAAGacaa 399
|| |||||||||||||| | |||||||| ||| || |||| || | | | |
Sbjct 225 GAAAACTGGACTTACGCTATCTTCTGGCAGATC-TCACACGACTT---C---G-ATTCTT 276
Query 400 caacaaca-acaacacaGTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAG 458
| || | ||||||| || | | || ||||||||||| || ||||||||||||||||
Sbjct 277 CCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGATACTACAAAGGAGAAGAAG 336
Query 459 A-GAAGTCTAGAAAGAAGAA-ATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTAA 516
| ||| || |||||||| | | || | || | | || || |||||||| || ||
Sbjct 337 ACAAAG---AG-AAGAAGAAGAAC-AA--C-GCGAACACGGCGGAGCAAGAGCACCGGAA 388
Query 517 GAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGC 576
||||| || | ||||| || || ||||||||||| || | |||| |||||| |
Sbjct 389 AAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTTTCCGATGAATC 448
Query 577 TGGA-GATGAAGAAGTTACAGATACTGAATGGTTCTTCTTAGTTTCAATGACACAGAGCT 635
| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 449 -AAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATGACTCAAAGCT 507
Query 636 TTGTCAAGGGTACTGGT-TTACCTGGTCAAGCTTTCTCAAA-T-TCAGACACGATTTGGT 692
| || || ||| ||| || || || || |||||| ||| | || | ||||||||
Sbjct 508 TCGTTAACGGTGTTGGACTTCCC-GGAGAATCTTTCTTAAACTCTC-GTGT-GATTTGGT 564
Query 693 TATCTGGTTCTAATGCTTTAGCTGGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTT 752
||||||| || | ||||| | || || ||||||| ||||| |||||||||||||||
Sbjct 565 TATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGTCAGATTT 624
Query 753 ATGGGTTACAA-ACAATGGTGTGTGTAGCGACAG-AGAATGGTGTCGTTGAGCTTGGTTC 810
| ||||| || || ||||||||| | ||||| | | || || |||||||||||||||||
Sbjct 625 ACGGGTTG-AAGACGATGGTGTGTATCGCGAC-GCAAAACGGCGTCGTTGAGCTTGGTTC 682
Query 811 GTCGGA-GATTATTCA-TCAAAGTTCAGATCTTGTTG-ATAAAGTTGACACCTT-TTTCA 866
|||||| | |||| | |||||| |||||||| | || |||||||| | | ||| ||| |
Sbjct 683 GTCGGAAG-TTATA-AGTCAAAGCTCAGATCT-GATGGATAAAGTTAATAACTTGTTT-A 738
Query 867 ATTTTAACAATGGTGGTGGTG--AA---T--T--TG--G-TTCTT---GGGCGTTT-AAT 910
| || ||||| |||||| ||| || | | || | ||||| ||| |||| |||
Sbjct 739 ACTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGG-GTTTTAAT 797
Query 911 TTGAATCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACC 960
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACC 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83608087775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5