BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17890.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965 1982 0.0
Ahg494303 jgi|Araly1|494303|fgenesh2_kg.8__119__AT5G46750.1 915 0.0
Ahg952267 jgi|Araly1|952267|scaffold_50700001.1 387 2e-106
Ahg946647 jgi|Araly1|946647|scaffold_702876.1 102 8e-21
> Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965
Length=3249
Score = 1982 bits (1073), Expect = 0.0
Identities = 1187/1242 (96%), Gaps = 8/1242 (1%)
Strand=Plus/Plus
Query 100 ATGGCTTCTTCTTCTG-CTGACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAA 158
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTCTGCTGAC-AACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAA 59
Query 159 ATCAAAATCTGAGAACAAGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATC 218
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ATCAAAATCTGAGAACAAGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACATGGGCATC 119
Query 219 GGTTACATATGGGATTTTCCTCTGCATCGATTGTTCAGCTACTCACCGGAATCTTGGTGT 278
|||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 120 GGTTACTTATGGGATTTTTCTCTGCATCGATTGTTCAGCTACTCATCGGAATCTCGGTGT 179
Query 279 TCATATCAGCTTCGTCAGATCAACGAATTTAGACTCTTGGAGCCCGGAGCAGCTCAGGAC 338
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 180 TCATATCAGCTTCGTCAGATCAACGAATTTAGACTCGTGGAGCCCTGAGCAGCTTAGGAC 239
Query 339 AATGATGTTTGGTGGTAACAACCGTGCTCAGGT-TTTCTTCAAGCAACATGGATGGACTG 397
||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 240 AATGATGTTTGGTGGCAACAACCGCGCTCAGGTGTTT-TTCAAGCAACATGGATGGACTG 298
Query 398 ATGGTGGCAAAATTGAAGCTAAGTATACTTCAAGAGCTGCTGATTTGTATCGGCAGATTC 457
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 299 ATGGTGGCAAAATTGAAGCCAAGTATACTTCAAGAGCTGCTGATTTGTATAGGCAGATTC 358
Query 458 TTGCTAAAGAAGTTGCGAAAGCGATTGCGGAAGAAACTAATTCTGGTCTT-CTGTCATCT 516
||||||| |||||||| ||||||||||| ||||| || ||||||||| || |||||||||
Sbjct 359 TTGCTAAGGAAGTTGCTAAAGCGATTGCAGAAGATACGAATTCTGGT-TTACTGTCATCT 417
Query 517 CCCGTTGCTACTTCTCAGTTACCGGAAGTATCTAATGGGGTTTCTTCTTATTCTGTCAAG 576
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 418 CCAGTTGCTACTTCTCAGTTACCGGAAGTATCTAATGGGGGTTCTTCTTATTCTGTCAAG 477
Query 577 GAAGAGTTACCTCTTTCGAAACATGAAGCTACCAGTGCTACTTCTTCGCCTAAAGCTTCT 636
||||||||||||| | | ||| |||||| | | | ||| ||||||||||||| |||||||
Sbjct 478 GAAGAGTTACCTCCTCCTAAATATGAAGGTGCTACTGCCACTTCTTCGCCTAGAGCTTCT 537
Query 637 AATACAGTTGTGCCTAGTACGTTTAAGAAACCTATTGGTGCTAAAAGGACAGGAAAAACT 696
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 538 AATACAGTTGTGCCTAGTACGTTTAAGAAACCTATCGGTGCTAAAAGGACAGGCAAAACT 597
Query 697 GGTGGTCTTGGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATCTCTATGAGCAGAAA 756
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 598 GGTGGTCTTGGTGCGAGGAAGCTTACTACCAAGCCAAAGGACAATCTCTATGAGCAAAAA 657
Query 757 CCGGAAGAAGTTGCACCGGTTATTCCCGCTGTATCATCAACAAATAACGGGGAAAGCAAA 816
|||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||
Sbjct 658 CCGGAAGAAGTTGCACCGGTTATTCCGGCTGCATCATCAACAAATAATGGAGAAAGCAAA 717
Query 817 TCATCAGCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTGGA 876
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TCATCAGCTGGTTCATCGTTTGCCTCTCGGTTTGAGTACAATGACGACTTGCAATCTGGA 777
Query 877 GGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGC 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCAAGC 837
Query 937 TTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAACTCTTCA 996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 TTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAACTCGTCA 897
Query 997 AAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATA 957
Query 1057 TCTTCAGCTCAGTACTTTGGGGATCAGAACAAAAACGCTGATCTGGAATCAAAAGCTACT 1116
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 TCTTCAGCTCAGTACTTTGGGGATCAGAACAAAAACGCTGATATGGAATCAAAAGCTACT 1017
Query 1117 CTTCAGAAGTTTGCAGGCTCAGCATCTATCTCAAGCGCTGATTTTTACGGTCACGACCAA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTTCAGAAGTTTGCAGGCTCAGCATCTATCTCAAGCGCTGATTTTTACGGTCACGACCAA 1077
Query 1177 GATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCG 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCTTTCCAGGCG 1137
Query 1237 CAACAAGATCTATCGTCGCT-GGTGAACATAGCAGGAGAAACAAAGAAGAAGCTTGGAAC 1295
||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 CAACAAGATATATCGTC-CTTGGTGAACATAGCAGGGGAAACAAAGAAGAAGCTTGGAAC 1196
Query 1296 TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1337
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCT 1238
> Ahg494303 jgi|Araly1|494303|fgenesh2_kg.8__119__AT5G46750.1
Length=1463
Score = 915 bits (495), Expect = 0.0
Identities = 1018/1260 (81%), Gaps = 77/1260 (6%)
Strand=Plus/Plus
Query 116 CTGACAATCTTACCGACAAAAACATTGTTTTCAGAAAACTCAAATCAAAATCTGAGAACA 175
|||| || || ||||| || || |||||||||||||||| ||||||||||| |||||||
Sbjct 75 CTGAGAAACTCACCGATAAGAATGTTGTTTTCAGAAAACTGAAATCAAAATCCGAGAACA 134
Query 176 AGGTCTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCATCGGTTACATATGGGAT-T 234
|||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
Sbjct 135 AGGTTTGCTTCGATTGTAGTGCGAAGAATCCAACTTGGGCTTCGGTTCCTTATGGGATCT 194
Query 235 TTCCTCTGCATCGATTGTTCAGCTACTCACCGGAA-TCTTGGTGTTCATATCAGCTTCGT 293
||| | |||||||||||||||||| ||| || || ||| ||||||||||| ||||||||
Sbjct 195 TTC-TATGCATCGATTGTTCAGCTGTTCATCG-AAGTCTCGGTGTTCATATTAGCTTCGT 252
Query 294 CAGATCAACGAATTTAGACTCTTGGAGCCCGGAGCAGCTCAGGACAATGATGTTTGGTGG 353
||| |||||||| |||||||| ||||| || |||||||| || |||||||||||||||||
Sbjct 253 CAGGTCAACGAACTTAGACTCGTGGAGTCCTGAGCAGCTAAGAACAATGATGTTTGGTGG 312
Query 354 TAACAACCGTGCTCAGGT-TTTCTTCAAGCAACATGGATGGACTGATGGTGGCAAAATTG 412
|||||||| |||||||| ||| || |||||||||||||||| ||||||||| |||||||
Sbjct 313 GAACAACCGAGCTCAGGTGTTTTTT-AAGCAACATGGATGGAATGATGGTGGTAAAATTG 371
Query 413 AAGCTAAGTATACTTCAAGAGCTGCTGATTTGTATCGGCAGATTCTTGCTAAAGAAGTTG 472
| || |||||||||||||||||||||||||||||| | || | ||||||||||||||||
Sbjct 372 AGGCCAAGTATACTTCAAGAGCTGCTGATTTGTATAGACAAACACTTGCTAAAGAAGTTG 431
Query 473 CGAAAGCGATTGCGGAAGAAACTAATT--CTGGTCTTCTGTCATCTCCCGTTGCTACTTC 530
| ||||| || || ||||||||| || | | || | | || ||| |||||||||||
Sbjct 432 CTAAAGCCATGGCCGAAGAAACTGTTTTACCG-TCAT-TATCCTCT---GTTGCTACTTC 486
Query 531 TCAGTTACCGGAAGT-ATCT-AA--TGGGGTTT-CTTCTTATTCTGTC-AAGGAAGAGTT 584
|||| | |||| | |||| || |||| ||| ||||| | ||| | || || |||||
Sbjct 487 TCAGCCAGTGGAA-TCATCTGAAAATGGG-TTTACTTCTGAATCTC-CGAAAGA-GAGTT 542
Query 585 ACCTCTTTCGA-AA-CATGAAGCTACCAGT-G-CT--ACTTCTTCGCCTAAAGCTTCTAA 638
| | || | || || ||||| || || | || |||||||| || ||||||||| |
Sbjct 543 -C-T-TTG-GTTAAGCAAGAAGCAACT-GTTGTCTCCACTTCTTCACCAAAAGCTTCTCA 597
Query 639 TACAGTTGT-GCCTAGTACGTTTAAGAAACCTATTG-GTGCTA-AAAGGACAGGAAAAAC 695
| |||||| || |||||||||||||||||| ||| || | | |||| ||||| || ||
Sbjct 598 GAAAGTTGTTGC-TAGTACGTTTAAGAAACCCCTTGTGT-CGAGAAAG-ACAGGGAAGAC 654
Query 696 TGGTGGTCTTGGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATCTCTATGAGCAGAA 755
||||||||||||||| | |||||||||||||||||||| || || ||||||||||||||
Sbjct 655 TGGTGGTCTTGGTGCTCGTAAGCTTACTACTAAGCCAAAGGATAACCTCTATGAGCAGAA 714
Query 756 ACCGGAAGAAGTTGCACCGGTTATTCCCGCTG-TATCATCAACAAATAACGGGGAAAGCA 814
|| |||||| || ||| || ||||| |||| | || ||||| ||||| | | ||
Sbjct 715 GCCTGAAGAACCTGTACCTGTGATTCCTGCTGCT-TCTTCAAC---TAACG---ACA-CA 766
Query 815 AATCATCAGCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTG 874
||||||||||| ||||||||||||||||| ||||||||| ||| || ||||||||
Sbjct 767 --TCATCAGCTGGATCATCATTTGCCTCTCGATTTGAGTACTTTGATGATGAGCAATCTG 824
Query 875 GAGGACAAAGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTC-A 933
| || ||||| | || |||| |||||||| |||||||||||||||||||| || |
Sbjct 825 GTGGGCAAAG--T-GGC---ACACGAGTGCTTAGTCATGTTGCTCCACCAAAGTCATCGA 878
Query 934 AGCTTCTTTTCGGATTTTGGAATGGACAGTTCTTTTCCCAAGAAATCAAGCTCCAA-CTC 992
| |||||| || ||||||||||||||| |||| |||||||| |||||||| || |||
Sbjct 879 AT-TTCTTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTC-AAGCTC 936
Query 993 TTCAAAATCTCAAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGC-AAAGT 1051
|| ||| |||| ||||||||| |||||||||||||||||||||| ||||||| ||| |
Sbjct 937 ATCCAAAGCTCAGGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCTAAA-T 995
Query 1052 CCATATCTTCAGCTCAGTACTTTGGGGATC-AGAACAAAAACGCTGATCTGGAATCAAAA 1110
| || || || || || | ||| || | | |||||| | | || |||||||| ||||||
Sbjct 996 CGATTTCCTCTGCCCAATT-TTTCGGAAACCAGAACAGAGATGCCGATCTGGACTCAAAA 1054
Query 1111 GCTACTCTTCAGAAGTT-TGCAGGCTCAGCATCTATCTCAAGCGCTGAT-TTTTACGGTC 1168
||||| |||||||| || | | ||||||||| |||| ||||| ||||| |||| || |
Sbjct 1055 GCTACCCTTCAGAAATTCT-CGGGCTCAGCAGCTATTTCAAGTTCTGATCTTTTT-GGCC 1112
Query 1169 ACG-ACCAAGATGATTCCAATATTGATATAACAGCTAGTGATCTCATTAACCGACTTTCT 1227
||| |||| ||||||||||| || ||||| || || || |||||||| |||||| |||||
Sbjct 1113 ACGGACCA-GATGATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCT 1171
Query 1228 TTCCAGGCGCAACAAGATCTATCGTCGCTGG-TGAACATAGCAGGAG-AAACAAAGAAGA 1285
||||||||||| |||||| | || || | | | ||| |||| | || |||||||||| |
Sbjct 1172 TTCCAGGCGCAGCAAGATATGTCATCTATTGCT-AACTTAGCTG-AGGAAACAAAGAATA 1229
Query 1286 AGCTTGGAAC-TTTGGCTTCTGGTATCTTCAGTGATATTCAAGACAGAATGCTGTAAGAA 1344
|||||||||| |||| || || |||| ||||||||| |||| || |||||||||||||||
Sbjct 1230 AGCTTGGAACATTTGCCT-CTAGTATATTCAGTGATCTTCAGGATAGAATGCTGTAAGAA 1288
> Ahg952267 jgi|Araly1|952267|scaffold_50700001.1
Length=1250
Score = 387 bits (209), Expect = 2e-106
Identities = 368/441 (83%), Gaps = 26/441 (6%)
Strand=Plus/Plus
Query 542 AAGTATCTAATGGGGTTTCTTCTTATTCTGTCAAGGAAGAGTTACCT----------C-T 590
|||||||| |||| |||||||||||||||||||||||||||||||| | |
Sbjct 425 AAGTATCTCCTGGGTTTTCTTCTTATTCTGTCAAGGAAGAGTTACCTCCCAAAGAAACTT 484
Query 591 -TTC---GAAACATGAAGCTACCAGTGCTACTTCTTCGCCTAAAGCTTCTAAT-ACAGTT 645
||| || |||||||||||||||||| |||||||||||||||||||||||| | | ||
Sbjct 485 CTTCTGTGATACATGAAGCTACCAGTGCCACTTCTTCGCCTAAAGCTTCTAATGA-ATTT 543
Query 646 GTGCCTAGTACGTTTAAGAAACCTATTGGTGCTAAAAGGACAGGAAAAACTGGTGGTCTT 705
|||||||||| |||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 544 TTGCCTAGTACATTTACGAAACCTATCATTGCTAAGAGGACAGGAAAAACTGGTGGTCTT 603
Query 706 GGTGCAAGGAAGCTTACTACTAAGCCAAAAGACAATC-TCTATGAGCAGAAACCGGAAGA 764
||||||||||||||||||||||||||||| || |||| | |||||||||| ||||||||
Sbjct 604 GGTGCAAGGAAGCTTACTACTAAGCCAAAGGAAAATCAT-TATGAGCAGACCCCGGAAGA 662
Query 765 AGT-TGCACCGGTTATTCCCGCTGTATCATCAACAAATAACGG-GGAAAGCAAATCATCA 822
|| | ||| | ||||||| || | ||| ||| | | |||| | |||| ||||||||||
Sbjct 663 -GTCTTCACTGCTTATTCCTGCAGCATCTTCAGCTATTAACCGCGGAAT-CAAATCATCA 720
Query 823 GCTGGTTCATCATTTGCCTCTCGGTTTGAGTACAATGACGACCTGCAATCTGGAGGACAA 882
|||| || |||| |||||||| ||||||| ||||||||||| ||||||| |||||||||
Sbjct 721 GCTGCTTTTTCATCTGCCTCTCAGTTTGAGAACAATGACGACTTGCAATCCGGAGGACAA 780
Query 883 AGCGTTGGTGGTACACAAGTGCTTAACCATGTTGCTCCACCAAAGTCGTCA--A-GCTTC 939
|||| ||||||| ||||||| |||| ||||||||||||||||||||| ||| | |||||
Sbjct 781 AGCGGTGGTGGTGCACAAGTTCTTACCCATGTTGCTCCACCAAAGTCATCATCAAGCTTC 840
Query 940 TTTTCGGATTTTGGAATGGAC 960
|| | |||| |||||||||
Sbjct 841 TTAGCAGATTCGGGAATGGAC 861
Score = 106 bits (57), Expect = 6e-22
Identities = 101/121 (83%), Gaps = 7/121 (6%)
Strand=Plus/Plus
Query 1004 AAGTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATATCTTCAG 1063
|||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
Sbjct 878 AAGTTGAAGAATCAGATGAAGCAAGAAAGAGGTTCTCAAACGCAAAGTCCATTTCTTCTG 937
Query 1064 CTCAGTACTTTGGGGATCAGAACAAAAAC-GCTGATC-TG--GAATCA-AAAGCTACTCT 1118
|||||| ||||| ||| ||| ||| | |||| || || |||||| ||| |||| ||
Sbjct 938 CTCAGTTTTTTGGAGATGAGATGAAAT-CTGCTGGTCGTGATGAATCAGAAA-CTACCCT 995
Query 1119 T 1119
|
Sbjct 996 T 996
> Ahg946647 jgi|Araly1|946647|scaffold_702876.1
Length=1234
Score = 102 bits (55), Expect = 8e-21
Identities = 99/119 (83%), Gaps = 7/119 (6%)
Strand=Plus/Plus
Query 1006 GTTGAAGAATCAGATGAAGCAAGAAAGAAGTTCACAAACGCAAAGTCCATATCTTCAGCT 1065
|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||
Sbjct 117 GTTGAAGAATCAGATGAAGCAAGAAAGAGGTTCTCAAACGCAAAGTCCATTTCTTCTGCT 176
Query 1066 CAGTACTTTGGGGATCAGAACAAAAAC-GCTGATC-TG--GAATCA-AAAGCTACTCTT 1119
|||| ||||| ||| ||| ||| | |||| || || |||||| ||| |||| |||
Sbjct 177 CAGTTTTTTGGAGATGAGATGAAAT-CTGCTGGTCGTGATGAATCAGAAA-CTACCCTT 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5