BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17895.1
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965 2593 0.0
> Ahg329738 jgi|Araly1|329738|fgenesh1_pm.C_scaffold_7001965
Length=3249
Score = 2593 bits (1404), Expect = 0.0
Identities = 1812/2000 (91%), Gaps = 63/2000 (3%)
Strand=Plus/Plus
Query 341 AGTCATTGGCTCTTTCGTCCCCAAATCGAGATCGCAGCGATGATGATGATAATAATAATA 400
|||||||||||||||||||||||||||||||| | ||| | |||| |||||||||
Sbjct 1280 AGTCATTGGCTCTTTCGTCCCCAAATCGAGAT--C-GCG--G-CGATG---ATAATAATA 1330
Query 401 ATCATGATTCGGTTTCAATTCCGCCTCCGATCTATGATGGGTATAGCTCTTCTTCCTCTG 460
||||||||||| | |||||||||||||||||||||||||| || | ||||||||| ||||
Sbjct 1331 ATCATGATTCGCTCTCAATTCCGCCTCCGATCTATGATGGTTACACCTCTTCTTCGTCTG 1390
Query 461 ACGAATCCCAGTCCGTTCCTTCTCCTCCGATCAATTTGGATCACGATGATGAT--G--AG 516
||||| |||| |||||| | | | ||||||||||||||||||||||||| | | | |
Sbjct 1391 ACGAAACCCAATCCGTT-CAT-T-CTCCGATCAATTTGGATCACGATGA-GTTCAGCAAT 1446
Query 517 TGT-CAGATTC-CA-A-TC--A---GGAATACTTCGCAAGCTCTAGACGATATCGACGAT 567
| | |||| || || | || | ||| |||||| ||||||||||||||||||||||||
Sbjct 1447 TTTCCAGACTCTCAGACTCGAATTGGGACTACTTCTCAAGCTCTAGACGATATCGACGAT 1506
Query 568 GATATCT--G--G-G-G--CG-ATGATGATCTCCCAGAGACTCGCAGACCTTGGACTCCT 618
||| ||| | | | | || ||||||||||| |||| ||| |||||||||||||||
Sbjct 1507 GATCTCTGGGACGCGTGTCCGTCTGATGATCTCCGAGAGGCTCACAGACCTTGGACTCCC 1566
Query 619 AATGTTTCGCCTGGTTTTGGAAGCgatgatgatgatgacaatgatgatgaCAACTCTAAA 678
||||||||||||||||||||||||||||||||||||||||| | | | ||| |
Sbjct 1567 AATGTTTCGCCTGGTTTTGGAAGCGATGATGATGATGACAA--CT-CT-AAAAC-C---G 1618
Query 679 AATGAACCTCGCAAATCCTTGTTCTATGGTTTCCGGCAAGAACCTGAGCCTGTTACTGGT 738
||| ||||||||||||||| | | ||| |||| ||||||||||||||| || ||||||
Sbjct 1619 AAT-CTCCTCGCAAATCCTTG-T-T-TGGATTCCCGCAAGAACCTGAGCCCGTGACTGGT 1674
Query 739 GTGGGAGCTGGGCTTTGGAATTTAGGCAACAGTTGTTTCCTTAATTCGGTGTTTCAATGC 798
|| || ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1675 GTTGGTGCTGGGCTTTGGAATCTAGGCAACACTTGTTTCCTTAATTCGGTGTTTCAATGC 1734
Query 799 TTCACTCATACTGTGCCACTTATCGAGAGCCTTCTTTCTTTCAGATATGAAGTTCCATGT 858
||||||||||||||| |||||||||||||||||| | ||| || |||||||||||| |||
Sbjct 1735 TTCACTCATACTGTGTCACTTATCGAGAGCCTTCGTGCTTACAAATATGAAGTTCCCTGT 1794
Query 859 CACTGTGGGAATGAGTTCTTCTGTGTTATAAGGGCTATTCGCTATCACATTGAGGCTGCA 918
|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1795 CACTGTGGCAATGAGTTCTTCTGTGTTATAAGGGCTCTTCGATATCACATTGAGGCTGCA 1854
Query 919 TTGAGGCCTGAGAGATGTCCAATTGCTCCGTAttttttttttGACAATCTTAACTATTTT 978
||||||||||||||||||||||||||||| |||| |||| || |||||||||| ||||||
Sbjct 1855 TTGAGGCCTGAGAGATGTCCAATTGCTCCCTATTATTTTCTTAACAATCTTAATTATTTT 1914
Query 979 TCACCTGACTTCCAGCGTTATCAACAAGAAGACGCTCATGAGTTTCTGCAAGCATTTTTG 1038
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 TCGCCTGACTTCCAGCGTTATCAACAAGAAGACGCTCATGAGTTTCTGCAAGCATTTTTG 1974
Query 1039 GAGAAGTTGGAGATATGTGGTTCGGATCGAACAAGTTTTCGTGGCGATATCACTTCTCAA 1098
||||||||||||| ||||||||||||| ||| |||||||| |||| ||||| |||||||
Sbjct 1975 GAGAAGTTGGAGAGATGTGGTTCGGATAGAAGAAGTTTTCATGGCAATATCTCTTCTCAG 2034
Query 1099 GATGTCTTTTCTGGTCGTCTCATCAGTGGGCTACGTTGCTGCAACTGTGACTAC-GTCTC 1157
||||||||| ||||||||||||||||||| || |||||||||||||| ||| | |||||
Sbjct 2035 GATGTCTTTGCTGGTCGTCTCATCAGTGGACTCCGTTGCTGCAACTGCAACT-CTGTCTC 2093
Query 1158 CGAGACATATGAAAAGTCAGTTGGGTTGAGTTTGGAAATTGAGGATGTGGATACCCTTGG 1217
|||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2094 CGAGACATTTGAAAAGTCTGTTGGGTTGAGTTTGGAAATTGAAGATGCGGATACCCTTGG 2153
Query 1218 AAGTGCACTAGAATCCTTTACCCGTGTGGAGAAACTTGATGAGCAATTGACATGCGACAA 1277
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 2154 GAGTGCACTTGAATCCTTTACCCGTGTGGAGAAACTTGATGAGCAGTTGACATGTGATA- 2212
Query 1278 CT-GTAATGAAAAAGTTTCAAAGGAGAAGCAACTGTTGCTTGATAAGCTCCCTTTGGTTG 1336
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2213 CTTGTAATGAAAAAGTTTCAAAGGAGAAGCAAATGCTGCTTGATAAGCTCCCTTTGGTTG 2272
Query 1337 CCACTTTCCATTTGAAGAGATTCAAGAATAATGGGTTATATATGGAGAAGATCTATAAGC 1396
| ||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 2273 CTACTTTCCATCTGAAGAGATTCAAGAATAATGGATTTTATATGGAGAAGATCTTTAAGC 2332
Query 1397 ATGTCAAGATCCCATTAGAGATAGACTTGCAGCCATATATGAGGAATATCCAGGAAAACG 1456
|||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2333 ATGTCAAGGTTCCATTAGAGATAGACTTGCAGCCATATATGAGGAATAGCCAGGAAAACG 2392
Query 1457 AAGTTTCTACAAAATACCATCTTTATGCTCTGGTGGAACATTTTGGGTATTCAGTAGCTT 1516
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 2393 AAGTTTCTACAAAATACCATCTCTATGCTCTTGTGGAACATCTTGGGTATTCAGTAGCTT 2452
Query 1517 ATGGACATTACTCCTCCTATGTGAGATCAGCTCCTAAGATATGGCATCACTTTGATGATT 1576
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2453 ATGGACATTACTCCTCCTATGTGAGATCCGCTCCTAAGATATGGCATCACTTTGATGACT 2512
Query 1577 CGAAGGTCACTAGAATAGATGAAGATATGGTGCTATCACAGGATTCGTATATTCTTTTTT 1636
||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2513 CGAAGGTCATTAGAATTGATGAAGATAGGGTGCTATCACAGGATTCATATATTCTTTTTT 2572
Query 1637 ATGCACGAGAAGGAACTCGCTGGTTTTCTAGTGTCTATGAAGAGATGCAGCCATTGGTTG 1696
||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||| |||
Sbjct 2573 ATGCACGGGAAGGAACTCCCTGGTTTTCTAGTGCCTATGAAGAGTTGCAGCCATTGCTTG 2632
Query 1697 AAGCGAGTTTACTAAATTCGTCCCCAAAGTCTGTGCTTGATTCCTCTACTAACGGGGAGT 1756
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2633 AAGCGAGTTTACTAAATTCTTCCCCAAAGTCTGTGCTTGATTCTTCTACTAACGGGGAGT 2692
Query 1757 GTTTATCAGAGATCAGTTATGAGAATGGCGATAAAGCAAGCAAACCCTGCGATTCTGCTG 1816
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2693 GTTTATCAGAGATCAGTTATGAGAATGGCGATAAATCAAGCAAACCCTGCGATTCTGCTG 2752
Query 1817 GAGTGTGTAACCAACATGTCAAGACGAAAGAAGATTTTGTTTCCCTCTCTAATGA--T-- 1872
|||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2753 GAGTGTCTAACAAACATGTCAAGACAAAAGAAGATTTTGTTTCCCTCTCTAATGAGCTAA 2812
Query 1873 --GA---TGTGTTTCTATCAGCAGAGTCTTCTAGTGGCGAGGAGTCTCCTATGGGAGAGC 1927
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 2813 CCGAAGATGTGTTTCTATCAGCAGAGTCTTCTAGTGGCGAGGATTCTACTATGGGAGAGC 2872
Query 1928 TTTTGGACCCGCTTGATCCTGATGATTCTTACAGTCCATGCACTGAGAAAGAATCAGATT 1987
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 2873 TTTTGGACCCGCTTGAGACTGTTGATTCTTACAGTCCATGCACTGAGAATGAACCAGATT 2932
Query 1988 CTTGTTTAGCCATTGAAAGAGCTACCATTCGTGATGAtttttttCCTCTGCTCCTGGATC 2047
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2933 CTTGTTTAGCCATTGAAAGAGCTACCACTGGTGATGATTTTTTTCCTCTGCTCCTGGATC 2992
Query 2048 AAAATCAAGAGTCGTCGACGTCGTCTCCAAAACTGCAAGAAAGAACTTTTGAAATGCAGC 2107
|||||||||||| |||| ||||||||||||| ||||||| |||||||| |||||||||
Sbjct 2993 AAAATCAAGAGTTGTCG---TCGTCTCCAAAACAGCAAGAAGGAACTTTTCAAATGCAGC 3049
Query 2108 TCTTGCAAATGGAAGAAACCACAAAGAGCCAAGAACCTTGGAAGCAGCCATTATCATCAA 2167
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3050 TCTCGCAAATCGAAGAAACCACAAAGAGCCAAGAACCTTGGAAGCAGCCATTATCATCAA 3109
Query 2168 TAAGCAATATCGCAGATTCCATGGAAGCAGAATTTGTGTATGGAGACCTCATGAAGAAAC 2227
||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3110 TAAGCAACATTGCAGATTCCATGGAAGCAGAATTTGTGAATGGAGACCTCATGAAGAAAC 3169
Query 2228 CTTCACCTCGTGCTAGAGAGTTGTTGGATCAAGCCATTTCTACAAATGGTTCTCCTCCCA 2287
|||||||| | |||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 3170 CTTCACCTAGGGCTAGAGAGTTGTTGGATCAAGCCATTTCTACAACTGGTTCTCCACCTA 3229
Query 2288 AAAAGTTAAAAACAACATGA 2307
||||||||||||||||||||
Sbjct 3230 AAAAGTTAAAAACAACATGA 3249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89702526975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5