BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17900.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493082 jgi|Araly1|493082|fgenesh2_kg.7__2515__AT4G17900.1 1694 0.0
> Ahg493082 jgi|Araly1|493082|fgenesh2_kg.7__2515__AT4G17900.1
Length=1212
Score = 1694 bits (917), Expect = 0.0
Identities = 1154/1257 (92%), Gaps = 62/1257 (5%)
Strand=Plus/Plus
Query 1 AAGGAGGTTGGGTTGGTCGACTTTGCTAAGATAAGAGAAGAGAGACTGAct-ctctctct 59
|||||||||||||||||||||||||| |||||||||| ||| |||| || || |||||
Sbjct 1 AAGGAGGTTGGGTTGGTCGACTTTGCAAAGATAAGAG-AGACTGACT--CTCCTTTCTCT 57
Query 60 ctctaactcttcattcttctctc-ttttaccttctctccaagaaatcttca---ct-t-t 113
||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| || | |
Sbjct 58 CTCTATCTCCTCATTCTTCTCTCTTTTTACCTTCTCTGCAAGAAATCTTCACTTCTCTCT 117
Query 114 ctctctAG-AAAAAAGTTGGAAGCTGACTCGATAAAGACTCTCTTTTTCTTCTT-CTTC- 170
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 118 CTCTCTAGAAAAAAAGTTGGAAGCTGACTCGAAAAAGACTCTCTTTTTCTTCTTCCTGCA 177
Query 171 -CTGC-A-AATGGCGATCGAGGATCAAGAGAACACAATCCGTGAAATCAAACCTAAGAAC 227
|| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 ACTACGATAATGGCGATCGAGGATCAAGAGAACACAATCCGTGAAATCAAGCCTAAGAAC 237
Query 228 AGAAGAATCATGGGAGCTGGTGGTCCGGAGGAAGAGGAGAACCGGTGGCCGCCATGGTTG 287
| |||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 238 CGGAGAATCATGGGAGCTGGTGGACCGGAGGAGGAAGAGAACCGGTGGCCGCCGTGGTTG 297
Query 288 AAACCTTTGCTTAAAGAGCAATTCTTTGTTCATTGCAAGTTTCATGGAGACTCTCATAAG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAACCTTTGCTTAAAGAGCAATTCTTTGTTCATTGCAAGTTTCATGGAGACTCTCATAAG 357
Query 348 AGTGAATGCAATATGTATTGCTTAGACTGCACCAATGGCCCACTTTGCTCTCTTTGTCTT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGTGAATGCAATATGTATTGCTTAGACTGCACCAATGGCCCACTTTGCTCTCTTTGTCTT 417
Query 408 GCTCATCACAAGGATCATCGCACCATTCAGATAAGGAGATCTTCTTATCATGATGTTATA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCTCATCACAAGGATCATCGCACCATTCAGATAAGGAGATCTTCTTATCATGATGTTATA 477
Query 468 AGGGTGAATGAGATACAAAAGTATCTTGATATAGGTGGGATCCAAACCTATGTGATCAAT 527
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 478 AGGGTGAATGAGATACAAAAGTATCTTGATATAGCTGGGATCCAAACATATGTGATCAAT 537
Query 528 AGTGCTAAAGTCGTCTTCCTGAATGAGAGGCCTCAGCCTAGGCCTGGGAAAGGAGTGACC 587
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||
Sbjct 538 AGTGCTAAAGTCGTCTTCTTGAATGAGAGGCCTCAGCCTAGGCCCGGGAAAGGTGTAACC 597
Query 588 AATACCTGCAAGGTTTGCTATCGTAGCCTCGTTGATGATAGCTTCCGCTTCTGCTCTCTT 647
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 598 AATACCTGCAAGGTTTGCTATCGTAGCCTCGTCGATGATAGCTTCCGCTTCTGCTCGCTT 657
Query 648 GGCTGCAAGATTGCTGGAACATCAAGAGGCTTTGAAAAGGGAAGGGAGAACCTGCTAATG 707
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 658 GGCTGCAAGATTGCTGGAACATCAAGAGGCTTTGATAAGGGAAGGGAGAACCTACTGATG 717
Query 708 GAAACAGAGGATTCAAGTAGCAGCATTGCAATTGGGAAGAACATTACAAATCTCCAGAGT 767
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 GAAACAGAGGATTCAAGTAGCAGCATTGGAATTGGGAAGAACATTACAAATCTCCAGAGT 777
Query 768 TTCAGCCCATCAACACCTCCACTTACTACATCTAGTAACTGCAGAATCGTCAAGCGAAGA 827
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 778 TTCAGCCCATCAACACCTCCACTTACTA------GTAATTGCAGAATCGTCAAGCGAAGA 831
Query 828 AAGGGAATTCCTCACCGATCTCCAATGGGATAAGAACCGAGATTACACACA--GGTTTTA 885
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 832 AAGGGAATTCCTCACCGATCTCCGATGGGATAAGAACCGAGATTACACACAAAGGGTTTA 891
Query 886 GCTAATACAGAGGCTTCTTCTGTCTCTTATCTTTCCTCGTATACCAAAAGAAATGGTCTT 945
|||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 892 GCTAATACAGAGACTTCTTCTGTCTCTTCTCTTTCCTCGTATACCAAA-GAAATGGTCTT 950
Query 946 TTGCTTGTGTTAGCaaaaaaaGAAAGGCCTTAAGTTAGGTTTTGTTGTCCTACTACTTGG 1005
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 951 TTGCTTGTGTTAGCAAAAAAAGAAAGGCCTTAAGTTAGGTTTTGTTGT----------G- 999
Query 1006 GCAAATATGTGAATATGTAATGTGCTTTGTATATG--ATGCAAAAAGGGTAGAAATGGAA 1063
|| ||||| ||| || | ||| ||||||| |||||||||||||||||| ||||
Sbjct 1000 --AA-TATGT-AAT--GT---G--CTT-GTATATGTGATGCAAAAAGGGTAGAAAGGGAA 1047
Query 1064 ATATAGGGGTTTTAGTGGGCTAAAAGTAAGAATAAAAACAAAATTAGTTTTTGGTTTTCA 1123
||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 1048 ATATAGGGGTTTTAGTGGGCTAAAAATGGGAATAAAAACAAAAT-AGTTTTTGGTTTTCA 1106
Query 1124 TTTATGTATGCATGGTGTAAATTTGGTTTGGTTAGGTGCATACATGGATCTTGaataatg 1183
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TCTATGTATGCATGGTGTAAATTTGGTTTGGTTAGGTGCATACATGGATCTTGAATAAT- 1165
Query 1184 aataataacaataaattaataatgagaataCCTACCTTTGTGTATTTTTTGCGATTT 1240
||||| | ||||| ||| |||| ||| ||| |||||||||||||||||||||
Sbjct 1166 AATAA-A----TAAAT-AAT---GAGATTACATAC-TTTGTGTATTTTTTGCGATTT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5