BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17910.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354960 jgi|Araly1|354960|fgenesh1_pg.C_scaffold_7002133 1906 0.0
> Ahg354960 jgi|Araly1|354960|fgenesh1_pg.C_scaffold_7002133
Length=2241
Score = 1906 bits (1032), Expect = 0.0
Identities = 1211/1295 (94%), Gaps = 21/1295 (2%)
Strand=Plus/Plus
Query 204 CTCTTGGTTCTATTACGATACTCCATTGGCTTCCACTGTAAAATTG---ATAACAATGGT 260
||||||||||| |||||||||||||||| ||||||||| | ||||| |||| ||||||
Sbjct 118 CTCTTGGTTCTTTTACGATACTCCATTGACTTCCACTGGATAATTGATAATAATAATGGT 177
Query 261 GTTAA-ATCCGTTACATCGAAGAAAAACGACGATGAGAAAATTGTTATTTCCAGAAATTG 319
| || | ||||| ||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 178 G-GAATAGCCGTTTCATCGAAGAAAAACGACGATGAG---ATTGTTGTTTCCAGAAATTG 233
Query 320 GAAGG--------C-TGCCATATCATTGGATTTCATCTTCATTGTCTTCCCCATGCTCCT 370
||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 234 GAAGGCTTACACTCATGCCATATCATTGGATTTCATCCTCATTGTCTTCCCCATGCTCCT 293
Query 371 CTTTTTCACTGTTCTATCAGAATGGGTTTATCATGGGACAGGCTTGTTGTCGTTGTTGGT 430
|||||||||||||||||||||||||| |||| |||| ||| |||||||| |||||| |
Sbjct 294 GTTTTTCACTGTTCTATCAGAATGGGTCTATCTTGGGGCAGTTTTGTTGTCTTTGTTGTT 353
Query 431 ACTGATTCTTTCTGTGACTGCCAAAAGATCTTTTTCAGGGTTGCAGAGAGGACAGTCTCT 490
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 GCTGATTCTTTCTCTGACTGCCAAAAGATCTTCTTCAGGGTTGCAGAGAGGACAGTCTCT 413
Query 491 CTCGTTTAGAGCAAGTGTATCTTCTTATAGAGTTGCTCTGATGCTTATTACATGCTTGTG 550
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 414 GTCGTTCAGAGCAAGCGTATCTTCTTATCGAGTTGCTCTGATGCTTATTACATGCTTGTG 473
Query 551 TATCTTGGCTGTTGACTTTACTATCTTTCCCAGAAGGTATGCCAAGACAGAGACTTATGG 610
||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 474 TATCTTGGCTGTTGATTTTACTATCTTTCCGAGGAGGTACGCCAAGACAGAGACTTATGG 533
Query 611 TACTAGCTTGATGGATCTTGGGGTTGGCTCTTTTGTGTTGGCTAATGCTGTTGTTTCTCG 670
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 534 TACTAGCTTGATGGATCTTGGGGTTGGCTCTTTTGTGTTGGCTAATGCTATAGTTTCTCG 593
Query 671 GCAAGCTAGAGACGTCTCATCAGGAAACTGGATAACTGGAATTAAAGCAACCGCTCCAT- 729
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 594 GCAAGCTAGAGACGTCTCATCAGGAAACTGGATAACTGGACTTAAAGCAACTGCTCC-TC 652
Query 730 TGCTA-TTACTCGGGTTTATTCGTCTTGTTACCACTTCAGGTGTGGATTATCAGGTCCAC 788
||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 653 TGCTACTT-CTCGCGTTTATTCGTCTCGTTACCACTTCAGGTGTGGATTATCAGGTCCAC 711
Query 789 GTTACGGAATATGGAGTACACTGGAATTTCTTTTTCACACTTGCAGCCATATCAATTCTC 848
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 712 GTTACGGAATATGGAGTACACTGGAACTTCTTTTTCACACTTGCAGCCATAGCAATTCTC 771
Query 849 ACATCGTTTGTTAACATACCAGCCAAGTACTGTGGACTCCTAGGTTTCGCTGTTCTTGCA 908
||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 772 ACATCATTTGTTAACATACCAGCCAAGTACTGTGGAATCCTAGGTTTCTCTGTTCTTGCA 831
Query 909 GGGTACCAAACTTGGTTGCTTAGTGGACTGAACACATATTTGCTTTCGGACGAAAGAGGA 968
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GGGTACCAAACTTGGTTGATTAGTGGACTGAACACATATTTGCTTTCGGACGAAAGAGGA 891
Query 969 ACTGACATTATCAGCAAAAACAAGGAAGGAGTATATAGCATTCTTGGTTATTGGGGCATG 1028
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 892 ACTGACATTATCAGCAAAAACAAGGAAGGAGTATATAGCATTCTCGGTTATTGGGGCATG 951
Query 1029 TACCTTCTTGGCGTTCACTTAGGTTATCGTCTCTTTTACGGAAAACATACAAATATTCGA 1088
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 952 TACCTTCTTGGCGTTCACTTAGGTTATCGTCTCTTTTACGCAAAACATTCAAATATTCGA 1011
Query 1089 AGCACCACAAGCTCAATCGCTAGAGTCTTTCTCGTTTCTCTTCTCTTATGGATTGTAACT 1148
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1012 AGCACCACAAGCTCAATCGCAAGAGTCTTTCTCGTTTCTCTTCTCTTATGGATTGTGACT 1071
Query 1149 ATACTTTTTGACAACTACGTTGAGAGGATCTCCCGTCGAACGTGTAACATGCCTTACGTT 1208
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1072 ATACTTCTGGACAACTACGTTGAGAGGATCTCCCGTCGAACGTGCAACATGCCTTACGTT 1131
Query 1209 ACTTGGGTGCTTGCGCAAGATCTTCAGGCGTTGGGGATATTTATGCTGTCTAGTTACATA 1268
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1132 ACTTGGGTGCTCGCGCAAGATCTTCAGGCACTGGGGATATTTATGCTGTCTAGTTATATA 1191
Query 1269 CCTCTGAACAAGCTTTCATCACTTGAAGAAGCAATTGACCAAAATCTGTTAGCAACCTTT 1328
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1192 CCTATGAACAAACTTTCATCACTTGAAGAAGCAATTGACCAAAATCTATTAGCTACCTTT 1251
Query 1329 CTGCTTGCAAACCTTGTTACAGGAATGGTGAACCTCACCGTAGATACCATCTTTGCTTCT 1388
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1252 CTGCTTGCAAACCTTGTTACAGGAATAGTGAACCTCACCGTAGATACCATATTCGCTTCT 1311
Query 1389 CCATTCTCTTCTCTTCTGATATTAACCGCTTACGCCTTTGCTTTATCTGCTATTATCGGA 1448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1312 CCATTCTCTTCTCTTCTGATATTAACCGCTTACGCCTTTGCTTTATCTGCTATTATTGGA 1371
Query 1449 ACCATTCATTTCTCCGGTTTCCGGTTAAAGTTCTG 1483
||||||||| ||||||||||||| |||||||||||
Sbjct 1372 ACCATTCATATCTCCGGTTTCCGATTAAAGTTCTG 1406
Score = 187 bits (101), Expect = 2e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 24 ATGGATTCTGTACCAAAGCAGACTCTAAATCCAAACAAACATCTCAAAGAACAATTTGTG 83
||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATTCTCTACCAAAGCAAACTCTGAATCCAAACAAGCATCTCAAAGAACAATTTGTG 60
Query 84 AGCAATCTCGATGGATCTTCAATTCTGGAAATCGCAGCACTATTGACCATTGTCCC 139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AGCAATCTCGATGGATCTTCAATTCTGGAAATCGCAGCACTATTAACCATTGTCCC 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5