BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17915.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946421 jgi|Araly1|946421|scaffold_702650.1 2218 0.0
> Ahg946421 jgi|Araly1|946421|scaffold_702650.1
Length=1434
Score = 2218 bits (1201), Expect = 0.0
Identities = 1327/1390 (95%), Gaps = 0/1390 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCGTGGGTTGGTGAATTTCACCGGATTATCAACGAGGTTATTAAACATTTGCGTT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGTTCGTGGGTTGGTGAATTTCACTGGATTATCAACGAGGTTATTAAACATTTGCGTT 80
Query 61 GATTCACTCTGCAAATTCCGGAAATTAGAGAAAGCTGAGTCTTTAATCATTGACGGAATC 120
||||||||||||||||| |||||||| || ||||||||| | || |||||||||||||||
Sbjct 81 GATTCACTCTGCAAATTTCGGAAATTGGAAAAAGCTGAGACCTTGATCATTGACGGAATC 140
Query 121 AGATTAGGTGTTGATCCTGATGTCGTCACTTACAACACACTGATCAGTGGCTATTGTCGA 180
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 141 AGATTAGGTGTTGCTCCTGATGTCGTCACTTACAACACATTGATCAGTGGTTATTGTCGA 200
Query 181 TTCGTTGGTATAGAAGAAGCTTACGCTGTGACTCGTCGTATGAGAGACGCCGGAATTAGA 240
||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct 201 TTCGTTGGTATAGAAGAAGGTTACGCTGTGACTCTTCGGATGAGAGACGCCGGAATTAGA 260
Query 241 CCAGACGTAGCTACGTATAATTCTTTAATCGCCGGAGCAGCTAGACGGCTTATGTTAGAT 300
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 261 CCAGACGTCGCTACGTATAATTCTTTAATCGCCGGAGCAGCTAGACGGCTGATGTTAGAT 320
Query 301 CATGTCCTCTACCTGTTCGACGAAATGCTTGAGTGGGGAATTTATCCTGATTTGTGGAGT 360
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 321 CGTGTCCTCTACCTGTTCGACGAAATGCTTGAGTGGGGTATTTATCCTGATTTGTGGAGT 380
Query 361 TACAATACTTTGATGTGTTGTTATTTTAAGCTAGGGAAACACGAAGAAGCGTTTCGGGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TACAATACTTTGATGTGTTGTTATTTTAAGCTAGGGAAACACGAAGAAGCGTTTCGGGTT 440
Query 421 CTTTATAAGGATCTTCAGCTCGCTGGGCTAAATCCAGGTCCTGATACTTACAATGTTCTT 480
||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 441 CTTTATAAGGATCTTCAGCTCGCCGGGCTAAGTCCCGGTCCTGATACTTACAATGTTCTT 500
Query 481 CTTGATGCTTTATGCAAGTGTGGTTATATAGACAATGCTCTAGAGCTTTTTAAAGAGATG 540
||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 501 CTTGATGCTCTATGCAAGTGTGGGTATATAGACAATGCTCTTGAGCTCTTTAAAGAGATG 560
Query 541 CAGAGTAGGTTTAAACCGGAGCTTATGACTTATAACATTCTTATCAACGGGCTTTGTAAA 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CAGAGTAAGTTTAAACCGGAGCTTATGACTTATAACATTCTTATCAACGGGCTTTGTAAA 620
Query 601 TCCAGGAGAGTCGGTACTGCGAAATGGATGCTAACGGAGCTGAAGAAATCAGGTTACACT 660
|||||||| ||||||||||||||||||||||| || ||||| |||| ||| |||||||||
Sbjct 621 TCCAGGAGGGTCGGTACTGCGAAATGGATGCTGACTGAGCTCAAGAGATCGGGTTACACT 680
Query 661 CCGAATGCTGTTACATATACTACAATCCTGAAGCTATATTTTAAGACCAGGAGGATTAGA 720
||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| ||
Sbjct 681 CCGAATGCTGTTACATACACTACAATCCTGAAATTATATATTAAGACTAGGAGGATTCGA 740
Query 721 AGAGGGCTTCAGTTGTTCTTAGAGATGAAAAGAGAAGGGTACACTTATGATGGGTATGCG 780
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 741 AGAGGGCTTCAATTGTTCTTAGAGATGAAAAGAGAAGGGTATACGTATGACGGGTATGCG 800
Query 781 TACTTCGCGGTTGTTAGTGCTTTGATTAAGACGGGTAGAACGAAAGAGGCTTATGAGTAT 840
|| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 801 TATTTTGCGGTTGTTAGTGCTTTGATTAAGACAGGTAGAACGAAAGAGGCGTATGAGTAT 860
Query 841 ATGCAAGAGTTAGTTAGGAAAGGTAGGAGACATGACATTGTTTCGTATAACACATTGTTG 900
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 861 ATGCAAGAGCTAGTTAGGAAAGGTAGGAGACATGACATTGTTTCGTACAACACATTGTTG 920
Query 901 AATCTGTATTTTAAAGACGGGAATTTGGATGCGGTCGATGATTTGTTAGGAGAGATAGAG 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 921 AATCTGTATTTTAAAGACGGGAATTTGGATGCGGTGGATGATTTGTTAGGAGAGATAGAG 980
Query 961 CGGAGAGGAATGAAAGCGGATGAGTATACACACACGATTATAGTTAATGGTTTGTTAAGG 1020
|||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 981 CGGAAAGGAATGAAAGCAGACGAGTATACACACACGATTATAGTCAATGGTTTGTTAAGG 1040
Query 1021 ACAGGACAGACGAGAAGAGCTGAGGAGCATTTTGTAAGTATGGGAGAGATGGGGATTGGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 ACAGGACAGACGAGAAGAGCTGAGGAGCATTTTGTAAGTATGGGAGAGATGGGGATTGGA 1100
Query 1081 TTGAATCTCGTGACTTGTAACTGTTTGGTTGATGGATTGTGTAAAGCGGGTCATGTGGAC 1140
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1101 TTGAATCTTGTGACTTGTAACTGTTTGGTTGATGGATTGTGTAAAGCGGGTCACGTGGAC 1160
Query 1141 CGGGCGATGAGATATTTTGAGTCGATGGAAGTGAAAGATGAGTATACTTACACCTCTGTT 1200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1161 CGGGCGATGAGATATTTTGAGTCGATGGAAGTGAAAGACGAGTATACTTACACCTCTGTT 1220
Query 1201 GTGCATAATCTTTGTAAAGACATGAGGTTTGTTTGTGCTTCAAAGCTGCTATTGTCGTGT 1260
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GTGCATAATCTCTGTAAAGACATGAGGTTTGTTTGTGCTTCAAAGCTGCTATTGTCGTGT 1280
Query 1261 TACAATAAAGGAATTAAGATTCCGACATCGGCGAGACGAGCGGTTTTGTCGGGTTTACGG 1320
|||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1281 TACAATAAGGGAATTAAGATTCCAACATCAGCGAGACGGGCGGTTTTGTCGGGTTTACGG 1340
Query 1321 ATGTCTGGATGTTACGGTGAAGCGAGGAAGGCGAAGGCCGAAATGAAACTGACCCTGGTT 1380
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1341 ATGTCTGGGTGTTACGGTGAAGCGAGAAAGGCGAAGGCCAAAATGAAACTGACCCTGGTT 1400
Query 1381 GGGAATTCCT 1390
||||||||||
Sbjct 1401 GGGAATTCCT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5