BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17920.1
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946420 jgi|Araly1|946420|scaffold_702649.1 1371 0.0
> Ahg946420 jgi|Araly1|946420|scaffold_702649.1
Length=929
Score = 1371 bits (742), Expect = 0.0
Identities = 814/850 (96%), Gaps = 0/850 (0%)
Strand=Plus/Plus
Query 21 ACCTCTGGCACCGCAACCTCCGCAACAACATTACGTTACACCGCCTCTCACGGTGATCCT 80
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 56 ACCTCCGCCACCGCAACCTCCGCCACAACATTACGTTACACCGCCTCTCACGGTGATCCT 115
Query 81 CACCGTAATCCTCCTCGTTTTCTTCTTCATCGGTTTCTTCACTCTCTATTTTTGCAAGTG 140
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 116 CACCGTAATCCTCCTCGTCTTCTTCTTCATTGGTTTCTTCACTCTCTATTTTTGCAAGTG 175
Query 141 TTTCCTCGACACAATGGTGCAAGCTTGGCGTCTCCACCACGGCGGAGACACCGTATCCGA 200
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 176 TTTCCTCGACACAATGATGCAAGCTTGGCGTCTCCACCACGGCGGAGATACCGTATCCGA 235
Query 201 CAATCCCCTCCAGCAACCGGAAGCTCCACCGGTAAATCCCGGCCTTGAACTTCGAATCAT 260
|||||||||||||| ||||||||||||||| ||||||||||| ||||| || || |||||
Sbjct 236 CAATCCCCTCCAGCCACCGGAAGCTCCACCCGTAAATCCCGGTCTTGACCTCCGGATCAT 295
Query 261 TAACTCATTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAGAAATACGG 320
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 296 TAATTCGTTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAAAAATACGG 355
Query 321 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTACGTCTCTTGAC 380
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 CCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTCCGTCTCTTGAC 415
Query 381 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAAC 475
Query 441 TTGCCCTGTTTGTCGTCGGGATCTTGATCCTCCTCCGCCACCGGAAAACACCAAGCCTAC 500
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 476 TTGTCCTGTTTGTCGTCGAGATCTTGATCCTCCTCCGCAACCGGAAAACACCAAGCCTAC 535
Query 501 TGTCGATGAGATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAAGAAGACGATCA 560
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 536 CGTCGATGAAATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAGGAAGACGATCA 595
Query 561 TCATCGTCAGCAGACAACAACACAGATTGATACTTGGCCATCTTCAGGACAGACCAGTAG 620
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 596 TCATCGTCATCAGACAACAACACCTATTGATACTTGGCCATCTTCAGGACAGAGTAGTAG 655
Query 621 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCATTCTACGGGACACTC 680
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 656 CATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCACTCGACGGGACACTC 715
Query 681 GATAGTGAGAAATAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 740
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATAGTGAGAAACAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGT 775
Query 741 AAAGATTAAGGTCACGAGAGGACATAGCCAGACAGAGAGTTGTGTTACGTTCGCTGAACT 800
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 776 AAAGATTAAGGTCACGAGAGGACATAGTCAGACAGAGAGTTGTGTTACGTTCGCCGAACT 835
Query 801 TATTAGAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 860
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TGTTAAAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATC 895
Query 861 TAAAAATTGA 870
| ||||||||
Sbjct 896 TGAAAATTGA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32213864865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5