BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17940.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493077 jgi|Araly1|493077|fgenesh2_kg.7__2510__AT4G17940.1 1317 0.0
> Ahg493077 jgi|Araly1|493077|fgenesh2_kg.7__2510__AT4G17940.1
Length=1011
Score = 1317 bits (713), Expect = 0.0
Identities = 928/1024 (91%), Gaps = 46/1024 (4%)
Strand=Plus/Plus
Query 44 TGATGAAATCTCTATTGATGAGAACCGGTTCGATGCCGGTTCTTCAAAACCGGTTAATTT 103
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 26 TGATGAAATCTCTATTGATGAGAACCGGTTCGATGCCGGTTCTTCAAAACCGCTTAATTT 85
Query 104 CAGGTGGTTCATCGCGGAAGATGACGCCTATCTCCAGGACCAACTCCGTCGAATCATTAT 163
|||||||||| || ||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 86 CAGGTGGTTCTTCACGGAAGATGACACCTATCTCCAGGAACAACTCCGTGGAATCATTAC 145
Query 164 CCAGCTACGGCGAGAGATTCGCCGGCGGGAAGATTTCGATCGAGGTTAAGGCTAATGTAG 223
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 146 CCAGCTACGGCGAGAGATTCGCCGGCGGGAAGATCTCCATCGAGGTTAAGGCTAATGTCG 205
Query 224 GGATGCGGAGGGTGTTATCGGAAAGTGATGTGATTAGATCTGAGAGAATGTTGAAAAGAG 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 206 GGATGCGGAGGGTGTTATCGGAAAGTGATGTGATTAGATCTGAGAGAATGTTGAAAAGTG 265
Query 284 TTGGATCTAAGCCTTCGCCGGCGAGAATCCCGGAGGATGATGAAGCGGGGGAGGAAGAAA 343
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 266 TTGGATCTAAGCCTTCGCCGGCAAAAATCCCGGAGGATGATGAAGCGGAGGAGGAAGAAA 325
Query 344 TTAGGTTTGCAGATGGTTGGGGGTCTATGATCTCCGGTGGTTTACCTGTGGAGGAGAAAT 403
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 326 TTAGGTTTGGAGATGGTTGGGGGTCTTTGATCTCCGGTGGTTTACCTGTGGAGGAGCAAG 385
Query 404 GTTTCACGGGTGGCGGTGTTGGTGGTGGATCTGGTTATAGCGGCGGTTATGGAAACGGAG 463
| ||| | ||||| |||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 386 GATTCTCCGGTGGTGGTGGTGGTAGTGGATCTGGTTATAGCGGCGGTTATGGAAAC---G 442
Query 464 GAGGAGGCGGTTATGAAGATAAGAGCAAGATCGGTGATTATTATCGAGAGATGTTGAGAT 523
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 443 GAGGAGGCGGTTATGAAGATAGGAGCAAGATCGGTGATTATTATCGAGAGATGTTGAAAT 502
Query 524 CTAATCCTAATAATTCGCTTCTTCTGATGAATTACGGCAAGTTTTTGTATGAGGTGGAGA 583
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 503 CAAATCCTAATAATTCGCTTCTTCTGATGAATTACGGCAAGTTTTTGTACGAGGTGGAGA 562
Query 584 AAGATGCAGAGGGAGCTGAAGAGTACTATGGAAGAGCAATACTGGAGAATCCAGGAGATG 643
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 563 AAGATGCAGAGAGAGCTGAAGAGTATTATGGAAGAGCAATACTGGAGAATCCAGGAGATG 622
Query 644 GAGAAGCTTTATCCATGTATGGAAGATTGATATGGGAAACGAAGAGAGATGAGAAGAGAG 703
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 623 GAGAAGCTTTGTCCATGTATGGAAGATTGATATGGGAAACGAAGAAAGATGAGAAGAGAG 682
Query 704 CTCAAGGTTACTTTGATCAAGCTGTTAATGCTTCTCCTAATGATTGTATGGTTTTGGGAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CTCAAGGTTACTTTGATCAAGCTGTTAATGCTTCTCCTAATGATTGTATGGTTTTGGGAT 742
Query 764 CATATGCACGTTTCATGTGGGAGGCAGAGgatgatgatgatgatgatgaagaagaagaag 823
| ||||| | |||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 743 CGTATGCTCATTTCATGTGGGAGGCAGAGGATGATGATGATGATGA--A-GAAGA-GTT- 797
Query 824 aagaagaaTGGATGGCTGCATCACCACTCATGGTTTCTGCAGTTTAGAGACT-AACACGA 882
|| ||| ||||||||||| ||||||||||||||||||||||| | || | |
Sbjct 798 AA------TGG----CTGCATCACCAGTCATGGTTTCTGCAGTTTAGAGA-TGAAAAAG- 845
Query 883 CGAAGATGAA-GAAGAAGTAATGGAGACTAAGATTATGTATCAAGTATCAACCttttttt 941
|| | | || | || || | | | |||||||||||| |||||||| | |||| |
Sbjct 846 -GA-G-T-AATG--GA-GTC-TA-A-ATTAAGATTATGTACCAAGTATCGATCTTTAGT- 894
Query 942 tGTCTATTTCACTGTC-T-TTTTACTAACTTTT--GTTG-TAATAACCTGAAGAGTAATG 996
|| |||||||||| | |||||||||||||| |||| | |||||||||||||||||
Sbjct 895 -GT--ATTTCACTGTTGTATTTTACTAACTTTTTTGTTGGTT-TAACCTGAAGAGTAATG 950
Query 997 AAAACATGTATGT-GAAAGAAAACGAATGTAACCTTATTATAAGAGAATAAAAGTGCTTT 1055
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AA--CATGTATGTTGAA-GAAAACGAATGTAACCTTATTATAAGAGAATAAAAGTGCTTT 1007
Query 1056 TGTA 1059
||||
Sbjct 1008 TGTA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5