BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17960.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946417 jgi|Araly1|946417|scaffold_702646.1 761 0.0
Ahg908118 jgi|Araly1|908118|Al_scaffold_0002_1199 322 3e-87
Ahg889891 jgi|Araly1|889891|Al_scaffold_0007_1877 322 3e-87
> Ahg946417 jgi|Araly1|946417|scaffold_702646.1
Length=508
Score = 761 bits (412), Expect = 0.0
Identities = 471/499 (94%), Gaps = 6/499 (1%)
Strand=Plus/Plus
Query 298 AAGGATTAGG-ATGGGTTTTTTCAAGAAATTAGCTGGTGTGTTTGGATTTGGCCAGGAAG 356
||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 12 AAGGATT-GGAATGGGGTTTTTCAAGAAATTGGCTGGTGTGTTTGGATTTGGCCAGGAAG 70
Query 357 TATTGAAAAATGAGGAAGATGATATTGATGTTTACGGTGACGGAGGTAATCAGCA-GAGA 415
| |||||||||||||||||||||||| |||||| | ||||||||| ||||||| | ||||
Sbjct 71 TGTTGAAAAATGAGGAAGATGATATTAATGTTTCCCGTGACGGAGATAATCAG-ACGAGA 129
Query 416 TTTCGTGAAACTGGATTACCAAGGAAAGGATTTGGAGTTCCGGTTCAAGTTGCTGTCGAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TTTCGTGAAACTGGATTACCAAGGAAAGGATTTGGAGTTCCGGTTCAAGTTGCTGTCGAA 189
Query 476 AGGTCTCAACTTGGTCCTCTTCTTCAGCCTTGCGCCAATGGAGATGGTGGTATTCAGGGA 535
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 190 AGATCTCAACTTGGTCCTCTTCTTCAGCCATGCGCCAATGGAGACGGTGGTATTCAGGGA 249
Query 536 CTGAGATGGTACACAAAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTT 595
|| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 250 CTAAGATGGTATACAAAACGGCTAAGAGTTGATGACGATGGAGATGTTGCAGATGAGTTT 309
Query 596 TTGGAAGAAGGAGAGAAATCGACTAACGCAGAAGATGATCATAACTGTATTAAGACTATG 655
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 310 TTGGAAGAGGGAGAGAAACCGACTAACGCAGAAGATGATCATAACTGTATTAGGACTATG 369
Query 656 CCAAGATTCCAAATTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCT 715
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 370 CCAAGACTCCAAATTAAACGCAAAACGAAACCTGTAAAAGTAAGAGGACTAGTTGTGTCT 429
Query 716 TCTGATGGGAAACTCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGAATT 775
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 430 TCTGATGGGAAACTCCAGCAATGCATTGAACATCATGGAAGGTTATTTATAGTATGAAT- 488
Query 776 GTTTTTGAACACAGAGAAG 794
| ||||| | |||||||||
Sbjct 489 GATTTTGCA-ACAGAGAAG 506
> Ahg908118 jgi|Araly1|908118|Al_scaffold_0002_1199
Length=240
Score = 322 bits (174), Expect = 3e-87
Identities = 208/224 (93%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 551 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTTTTGGAAGAAGGAGAG 610
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 19 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCGGTTGAGTTTTTGGAAGAAGGGGAG 78
Query 611 AAATC-GACT-AACGCAGAAGATGATCATAACTGTATTAAGACTATGCCAAGATTCCAAA 668
||| | || | ||| |||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 79 AAA-CAGA-TAAACTCAGAAGATGATCATAATTGTATTAAGACTATGCCAAAACTCCAAA 136
Query 669 TTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 728
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 137 TTAAACACAAAACGAAACCTGCAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 196
Query 729 TCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGA 772
|||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 197 TCCAGCAATGCATTGAACATCAAGGAAGATTACTTATAGTATGA 240
> Ahg889891 jgi|Araly1|889891|Al_scaffold_0007_1877
Length=243
Score = 322 bits (174), Expect = 3e-87
Identities = 208/224 (93%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 551 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTTTTGGAAGAAGGAGAG 610
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 22 AAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCGGTTGAGTTTTTGGAAGAAGGGGAG 81
Query 611 AAATC-GACT-AACGCAGAAGATGATCATAACTGTATTAAGACTATGCCAAGATTCCAAA 668
||| | || | ||| |||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 82 AAA-CAGA-TAAACTCAGAAGATGATCATAATTGTATTAAGACTATGCCAAAACTCCAAA 139
Query 669 TTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 728
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 140 TTAAACACAAAACGAAACCTGCAAAAGTAAGAGGACTAGTTGTGTCTTCTGATGGGAAAC 199
Query 729 TCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGA 772
|||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 200 TCCAGCAATGCATTGAACATCAAGGAAGATTACTTATAGTATGA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5