BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17970.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1 2662 0.0
Ahg494317 jgi|Araly1|494317|fgenesh2_kg.8__133__AT5G46610.2 918 0.0
Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124 743 0.0
> Ahg493074 jgi|Araly1|493074|fgenesh2_kg.7__2507__AT4G17970.1
Length=1724
Score = 2662 bits (1441), Expect = 0.0
Identities = 1639/1732 (95%), Gaps = 23/1732 (1%)
Strand=Plus/Plus
Query 41 gagagagagagagTACCAATTTCTCTCCCTCAAAATGTCCAATAAGGTTCACGTAGGGAG 100
||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 1 GAGAGAGAGAGAG--CCAATTTGTCTCCCTCAAAATGTCCAACAAAGTTCACGTAGGGAG 58
Query 101 CCTTGAGATGGAGGAAGGTTTGAGCAAGACGAAGTGGATGGTTCTCGAACCTTCTGAAAA 160
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 59 CATTGAGATGGAGGAAGGTTTGAGCAAGACGAAGTGGATGGTTCTAGAACCTTCTGAGAA 118
Query 161 GATTAAGAAGATTCCGAAAAGGCTTTGGAATGTCGGAAAAGAAGATCCGAGGAGAGTGAT 220
||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 GATCAAGAGGATACCGAAAAGGCTTTGGAGTGTCGGAAAAGAAGATCCGAGGAGAGTGAT 178
Query 221 ACATGCCCTTAAAGTAGGTCTTTCCTTGACACTCGTTTCTTTGCTATATCTCATGGAGCC 280
||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||
Sbjct 179 ACATGCCCTTAAAGTAGGTCTTTCCATGACACTTGTATCTTTGTTATATCTCATGGAGCC 238
Query 281 TCTCTTCAAAGGCATTGGAAGCAATGCTATTTGGGCAGTCATGACTGTCGTCGTCGTCCT 340
||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 239 TCTCTTCGAAGGCATTGGAAGCAATGCTATTTGGGCCGTCATGACAGTCGTCGTCGTCCT 298
Query 341 CGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAAT 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAAT 358
Query 401 TGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAGCTAATGATTCCGGCAAAGTCCTTCG 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAGCTAATGATTCCGGCAAAGTCCTTCG 418
Query 461 AGCTATCTTCATTGGCACTGCTGTTTTTATCATTGGAGCGGCTGCTACTTATATAAGATT 520
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 419 AGCTATTTTCATTGGCACTGCTGTTTTTGTCATTGGAGCGGCTGCAACTTATATAAGATT 478
Query 521 TATACCATACATAAAGAAGAATTACGATTACGGTGTTGTGATATTTCTCTTGACGTTCAA 580
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 TATACCATACATAAAGAAGAATTACGATTATGGTGTTGTGATATTTCTCTTGACGTTCAA 538
Query 581 TCTTATAACGGTGTCAAGCTATCGAGTAGATAGTGTGATAAACATAGCACACGATAGATT 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTTATAACGGTGTCAAGCTATCGAGTAGATAGTGTGATAAACATAGCACACGATAGATT 598
Query 641 CTACACTATAGCCGTTGGTTGCGGAATCTGTCTTTTCATGAGCCTTCTTGTTTTTCCTAT 700
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTACACTATAGCCATTGGTTGCGGAATCTGTCTTTTCATGAGCCTTCTTGTTTTTCCTAT 658
Query 701 TTGGTCTGGTGAAGATCTACACAAGACCACCGTTGGTAAACTCCAAGGCCTCTCTCGCTC 760
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 TTGGTCTGGTGAAGATCTACACAAGACCACCGTTGGTAAACTCCAAGGCCTTTCTCGCTC 718
Query 761 TATAGAAGCATGTGTGGATGAGTACTTTGAGGAGAAAGAGAAAGAAAAAACAGATTCAAA 820
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TATTGAAGCATGTGTGAATGAGTACTTTGAGGAGAAAGAGAAAGAAAAAACAGATTCAAA 778
Query 821 AGACAGAATCTACGAAGGGTATCAAGCTGTTTTGGATTCTAAATCTACTGACGAAACACT 880
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 779 AGACAGAATCTACGAAGGGTATCAAGCTGTTTTGGATTCTAAATCCACTGATGAAACACT 838
Query 881 TGCATTATATGCAAATTGGGAACCAAGACACACTCTACGTTGTCATAGATTTCCATGTCA 940
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 839 TGCATTATATGCAAATTGGGAGCCGAGACACACACTACGTTGTCATAGATTTCCATGTCA 898
Query 941 ACAATATGTTAAAGTTGGAGCTGTTCTTCGTCAATTTGGTTACACTGTTGTTGCTCTTCA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACAATATGTTAAAGTTGGAGCTGTTCTTCGTCAATTTGGTTACACTGTTGTTGCTCTTCA 958
Query 1001 CGGTTGCTTACAAACTGAGATTCAAACTCCAAGATCCGTTCGCGCGCTTTTTAAAGATCC 1060
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 959 CGGTTGCTTACAAACCGAGATTCAAACTCCAAGATCTGTTCGCGCGCTTTTCAAAGATCC 1018
Query 1061 TTGTGTAAGATTAGCCGGAGAAGTATGCAAAGCTTTGACGGAACTCGCAGATAGCATCTC 1120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TTGTGTAAGATTAGCCGGAGAAGTATGCAAAGCTTTGACGGAACTCGCGGATAGCATCTC 1078
Query 1121 AAACCACCGTCATTGTTCACCGGAGATTCTATCCGATCATCTCCACGTGGCACTTCAAGA 1180
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 AAACCACCGTCACTGTTCACCGGAAATTCTATCCGATCATCTCCACGTGGCACTTCAAGA 1138
Query 1181 TCTTAATTCCGCTATCAAGTCTCAGCCTAAACTCTTCCTTGGCTCTAACCTCCATCGTCA 1240
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 1139 TCTTAATTCCGCCATCAAGTCTCAGCCTAAACTCTTCCTTGGTTCTAATCTCCATCGT-A 1197
Query 1241 CAATAATAAACACCAAAACGGTAGCATTTCCAATAACAAACA-C----C---A---TCA- 1288
| ||| | ||||||||||| ||| |||| | ||||||||| | | | ||
Sbjct 1198 -A-TAA-A--CACCAAAACGGCAGCGTTTCTAGTAACAAACATCAAAACGGTACCGTCTC 1252
Query 1289 GC---GCAACAGTAGTAACAGTGGAAAAGATCTAAACGGCGACGTTTCTCTTCAAAATAC 1345
|| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 GCAACGCAACAACAGTAATATTGGAAAAGATATAAACGGCGACGTTTCTCTTCAAAATAC 1312
Query 1346 CGAAACCGGTACACGTAAAATTACAGAAACCGGTTCACGTCAAGGCCAAAACGGAGCCGT 1405
|||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||
Sbjct 1313 CGAAACCGGTACGCGTAAAGTTACAGAAACCGGTGCACGTCAAGGGCAAAACGGAGCCGT 1372
Query 1406 TTCACTTTCAAGCTTTAGGACTGACACGTCAGCTTTAATGGAGTACCGGAGATCGTTCAA 1465
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1373 TTCGCTTTCGAGCTTTAGGACTGACACGTCAGCTTTAATGGAGTATCGGAGATCGTTTAA 1432
Query 1466 GAACAGTAACTCAGAGATGTCGGCGGCGGGAGAGAGGAGGATGTTACGGCCACAGCTGAG 1525
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAACAGTAACTCCGAGATGTCGGCGGCGGGAGAGAGGAGGATGTTACGGCCACAGCTGAG 1492
Query 1526 CAAAATCGCGGTGATGACGAGTCTCGAATTCTCGGAGGCATTACCGTTCGCGGCGTTTGC 1585
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1493 CAAAATCGCGGTGATGACGAGCCTCGAATTCTCGGAGGCTTTACCGTTCGCGGCGTTTGC 1552
Query 1586 GTCGTTGCTAGTGGAAATGGTGGCGAGGCTCGATAATGTAATCGAAGAAGTTGAGGAATT 1645
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1553 GTCGTTGCTAGTGGAAATGGTGGCGAGGCTTGATAATGTAATCGAAGAAGTTGAGGAATT 1612
Query 1646 GGGAAGGATCGCAAGTTTTAAGGAGTATGATAACAAGCGAGATCAGACGGCTGACGATGT 1705
||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1613 GGGAAGGATCGCATCTTTTAAGGAGTACGATAACACGCGAGATCCGACGGCTGACGATGT 1672
Query 1706 CCGATGCGAAAACCCGGCGAATGTTACGATCAGTGTCGGTGCCGCGGAATGA 1757
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1673 CCGATGCGAAAAACCGGCGAATGTTACGATCAGTGTCGGCGCCGCTGAATGA 1724
> Ahg494317 jgi|Araly1|494317|fgenesh2_kg.8__133__AT5G46610.2
Length=1911
Score = 918 bits (497), Expect = 0.0
Identities = 909/1102 (82%), Gaps = 51/1102 (5%)
Strand=Plus/Plus
Query 159 AAGATTAAGAAGATTCCGAAA-AGGCTTTGGAATGTCGGAAAAGAAGATCCGAGGAGAGT 217
||||| ||||||||| | ||| || | ||||| || |||||||| ||||| ||||||||
Sbjct 151 AAGATCAAGAAGATT-CTAAAGAGTATATGGAAAGTTGGAAAAGATGATCCTAGGAGAGT 209
Query 218 GATACATGCCCTT-AAAGTAGGTCTTTCCTTGACACTCGTTTCTTTGCTATATCTCATGG 276
|| ||||| | || |||||||| |||| || ||||| || || || | ||||||||||
Sbjct 210 GAAACATG-CTTTAAAAGTAGGAGTTTCTTTAACACTTGTGTCCTTATTGTATCTCATGG 268
Query 277 AGCCTCTCTTCAAAGGCATTGGAAGCAATGCTATTTGGGCAGTCATGACTGTCGTCGTCG 336
|||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||
Sbjct 269 AGCCTCTCTTCAAAGGCATTGGAAATAGTGCTATTTGGGCAGTCATGACCGTCGTGGTCG 328
Query 337 TCCTCGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACAC 396
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 329 TCCTCGAGTTCTCTGCCGGTGCCACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACAC 388
Query 397 TAATTGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAGCTAATGATTCCGGCAA-AGTC 455
||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| | |
Sbjct 389 TAATTGCTGGATCTTTGGCATTTTTCATCGAATTTGTCGCTAATGATTCCGGCAAGATT- 447
Query 456 CTTC-GAGCTATCTTCATTGGCACTGCTGTTTTTATCATTGGAGCGGCTGCTA-CTTATA 513
||| ||||||| ||||||||| |||| ||||| || || |||||| ||| || | |||
Sbjct 448 -TTCCGAGCTATTTTCATTGGCGCTGCAGTTTTCATAATCGGAGCG-CTGATAACCTATT 505
Query 514 TAAGATTTATACCATACATAAAGAAGAATTACGATTACGG--TGTTGTGATATTTCTCTT 571
| |||||||| ||||||||||| ||||| ||||||||||| || | | |||||||||||
Sbjct 506 TGAGATTTATTCCATACATAAAAAAGAACTACGATTACGGCATGCT-T-ATATTTCTCTT 563
Query 572 GACGTTCAATCTTATAACGGTGTCAAGCTATCGAGTAGATA-GTGTGAT-AAACATAGCA 629
|||||||||||| ||||| ||||| || ||| |||| |||| | ||||| ||| || |||
Sbjct 564 GACGTTCAATCTAATAACAGTGTCGAGTTATAGAGTTGATACG-GTGATTAAA-ATTGCA 621
Query 630 CACGATAGATTCTACACTATAGCCGTTGGT-TGCGGAATCTGTCTTTTCATGAGCCTTCT 688
|| || |||||||| ||||||||| | ||| | || || || || ||||||||||| |
Sbjct 622 CATGAGAGATTCTATACTATAGCCATGGGTGTT-GGCATTTGCCTACTCATGAGCCTT-T 679
Query 689 TG-TTTTTCCTATTTGGTCTGGTGAAGATCTACACAAGA-CCACCGTTGGTAAACTCCAA 746
|| |||||||||||||||||||||| || || ||||| | ||||||| | ||| |||||
Sbjct 680 TGGTTTTTCCTATTTGGTCTGGTGAGGACCTTCACAA-ATCCACCGTCGCTAAGTTCCAA 738
Query 747 GGCCTCTCTCGCTCTATAGAAGCATGTGTGGATGAGTACTTTGAGGAGAAAGAGAAA--- 803
||||||||| || || |||||||||||| ||||||||||||| ||| | ||||||
Sbjct 739 GGCCTCTCTTATTCCATTGAAGCATGTGTGAATGAGTACTTTGAAGAGGAGGAGAAAAAC 798
Query 804 GAA-AAA-A-CAGATTCA--A-AAGACAGAATCTACGAAGGG-TATCAAG-CTGTTTTGG 855
||| ||| | |||||| | | |||||| ||||| || || ||| ||| |||||||||
Sbjct 799 GAAGAAACATCAGATTTATCAGAAGACACTATCTAT-AACGGATAT-AAGACTGTTTTGG 856
Query 856 ATTCTAAATCTACTGACGAAACACTTGCATTATATGCAAATTGGGAACCAAGACACACTC 915
|||| ||||| | || ||| |||||||| | ||||||| |||||| |||||||||||
Sbjct 857 ATTCCAAATCCGCCGATGAAGCACTTGCAATGTATGCAAGTTGGGAGCCAAGACACACAA 916
Query 916 TACGTTGTCATAGATTTCCATGTCAACAATATGTTAAAGTTGGAGCTGTTCTTCGTCAAT 975
|| |||||||||||||||||| |||| ||||||||||||||| |||||||||||| |
Sbjct 917 GACATTGTCATAGATTTCCATGGAAACATTATGTTAAAGTTGGATCTGTTCTTCGTCTGT 976
Query 976 TTGGTTACACTGTTGTTGCTCTTCACGGTTGCTTACAAACTGAGATTCAAACTCCAAGAT 1035
||||||||||||||||||||||||| ||||||||| |||| || ||||| ||||| || |
Sbjct 977 TTGGTTACACTGTTGTTGCTCTTCATGGTTGCTTAAAAACCGAAATTCAGACTCCGAGGT 1036
Query 1036 C-CGTTCGCGCG-CTTTTTAAAGATCCTTGTGTAAGATTAGCCGGAGAAGTATGCAAAGC 1093
| | |||| | | || || || |||||||| |||||| ||||||||||| | ||||| |
Sbjct 1037 CTC-TTCGTG-GACTCTTCAAGGATCCTTGCGTAAGACTAGCCGGAGAAATCTGCAAGGT 1094
Query 1094 TTTGACGGAACTCGCAG-ATAGCATCTC-AAACC-ACCGTCATTGTTCACCGGAGATTCT 1150
|||| | |||||||| | | ||||| | ||||| || |||| || || |||||||||||
Sbjct 1095 TTTGTCCGAACTCGCTGCA-AGCAT-TAGAAACCGAC-GTCACTGCTCGCCGGAGATTCT 1151
Query 1151 ATCCGATCA-TCTCCACGTGGCACTT-CAAGATCTTAATTCCGCTATCAAGTCTCAGCCT 1208
||||| || |||||| |||||| || |||||||| || | || || || || || |||
Sbjct 1152 TTCCGA-CAGTCTCCAAGTGGCA-TTACAAGATCTCAACACAGCCATTAAATCCCAACCT 1209
Query 1209 AAACTCTTCCTTGGCTCTAACC 1230
||||||||||| ||| ||||||
Sbjct 1210 AAACTCTTCCTCGGCGCTAACC 1231
> Ahg356337 jgi|Araly1|356337|fgenesh1_pg.C_scaffold_8000124
Length=1635
Score = 743 bits (402), Expect = 0.0
Identities = 926/1169 (79%), Gaps = 75/1169 (6%)
Strand=Plus/Plus
Query 141 GTTCTCGAACCTTCTGAA-AAGATTAAGAAGATTCCGAAA-AGGCTTTGGAATGTCGGAA 198
||||| || |||| ||| ||||| ||||||| | | ||| | || |||||||| ||||
Sbjct 76 GTTCT-AAAACTTCCGAAGAAGATGAAGAAGACT-CTAAAGAATCTATGGAATGTGGGAA 133
Query 199 AAGAAGATCCGAGGAGAGTGATACATGCCCTT-AAAGTAGGTCTTTCCTTGACACTCGTT 257
|||||||||||||||||||||||||||| || |||||||| || |||| ||||| ||
Sbjct 134 AAGAAGATCCGAGGAGAGTGATACATGCT-TTGAAAGTAGGAGTTGCCTTAACACTTGTG 192
Query 258 TCTTTGCTATATCTCATGGAGCC-TCTCTTCAAAGGCATTGGAAGCAATGCTA-TTTGGG 315
||||| | ||||||||||| || | |||||||||| ||| || ||||| | ||||||
Sbjct 193 TCTTTATTGTATCTCATGGAACCAT-TCTTCAAAGGTGTTGTAAAAAATGC-ACTTTGGG 250
Query 316 CAGTCATGACTGTCGTCGTCGTCCTCGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGC 375
|||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct 251 CAGTCATGACCGTCGTTGTCGTTCTCGAGTTCTCTGCCGGTGCAACATTACGCAAAGGA- 309
Query 376 TTAA-TAGAGGATTAGGGACACTAATTGCGGGATCTTTGGCATTTTTCATTGAGTTTGTA 434
|||| ||||||||||||||||||||| || ||||||||||||||||| ||||||| ||
Sbjct 310 TTAAATAGAGGATTAGGGACACTAATAGCAGGATCTTTGGCATTTTTTATTGAGTGGGTT 369
Query 435 GCTAATGATTCCGGCAAAGTCCTTCG-AGCTATCTTCATTGGCACTGCTGTTTTTATCAT 493
|||| | ||||||| ||| |||| || || |||||||||||||||| ||||||| |||||
Sbjct 370 GCTATTCATTCCGGTAAAATCCT-CGGAGGTATCTTCATTGGCACTTCTGTTTTCATCAT 428
Query 494 TGGAGCGGCTGCTA-CTTATATAAGATTTATACCATACATAAAGAAGAATTACGATTACG 552
||| || | | || | || || |||||||| || ||||||||||| || || || ||||
Sbjct 429 CGGATCGAC-GATAACATACATGAGATTTATTCCGTACATAAAGAAAAACTATGACTACG 487
Query 553 GTGTTG-T-GATATTTCTCTTGACGTTCAATCTTATAACGGTGTCAAGCTATC-GAGTAG 609
|| | | | | ||||||| |||||||| ||||| || || || || || || | |||| |
Sbjct 488 GTAT-GCTTG-TATTTCTTTTGACGTTTAATCTAATCACAGTATCGAGTTA-CAGAGTCG 544
Query 610 ATAGTGTGATAAACATAGCACA--CGATAGATTCTACACTATAGCCGTTGGT-TGCGGAA 666
||| |||||| || || ||||| ||| |||| || ||||| | ||||| | ||| |
Sbjct 545 ATACTGTGATTAAGATCGCACATACGA--GATTATATACTATTGGTATTGGTAT-CGGCA 601
Query 667 TCTGTCTTTTCATGAGCCTTCTTG-TTTTTCCTATTTGGTCTGGTGAAGATCTACACAAG 725
| ||||| ||||||||||| ||| ||||||| || |||||||| || || || || ||
Sbjct 602 TTTGTCTCGTCATGAGCCTT-TTGGTTTTTCCGATATGGTCTGGCGATGACCTTCATAA- 659
Query 726 A-CCACCGTTGGTAAACTCCAAGGCCTCTCTCGCTCTATAGAAGCATGTGTGGATGAGTA 784
| ||||| || ||| ||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 660 ATCCACCTTTACTAAGCTCCAAGGCCTCTCTCGATGTATAGAAGCATGTGTGCATGAGTA 719
Query 785 CTTTGAGGAGAAAGAGAAAGAA-AA-AA-CA--G-ATTCA-AA----A-GAC-A-GA--- 827
|||||||| || |||||||| || || || | |||| || | || | ||
Sbjct 720 TTTTGAGGACAAGGAGAAAGACCAAGAATCATCGGATTCTGAATCTGATGATGAAGACCT 779
Query 828 A-TCTACGAAGGGTATCAAG-CTGTTTTGGATTCTAAATCTACTGACGAAACACTTGCAT 885
| ||||| |||||||| ||| ||||||||||||||||||| |||| ||| |||| |||
Sbjct 780 AATCTACAAAGGGTAT-AAGACTGTTTTGGATTCTAAATCCGCTGATGAAGCACTCGCAA 838
Query 886 TATATGCAAATTGGGAACCAAGACACACTCTA-CGTTGTCATAGATTTCCATGTCAACAA 944
| | |||||| ||||| | |||| |||| | | ||| |||| |||||||| |||||||
Sbjct 839 TGTTTGCAAAATGGGAGCTAAGAAACACAA-AGCTTTGCCATAAATTTCCATCTCAACAA 897
Query 945 TATGTTAAAGTTGGAGCTGTTCTTCGTCAA-TTTGGTTACACTGTTGTTGCTCTTCACGG 1003
||| | ||||||||| | |||||||| ||| ||| |||||||||||||||||||||| ||
Sbjct 898 TATATCAAAGTTGGATCCGTTCTTCG-CAAGTTTAGTTACACTGTTGTTGCTCTTCATGG 956
Query 1004 TTGCTTACAAACTGAGATTCAAACTCCAAGATCCGTTCGCG-CGCTTTTTAAAGATCCTT 1062
|||||||||||||||||||| |||||||| || |||| | || || ||||||||||
Sbjct 957 CTGCTTACAAACTGAGATTCAGACTCCAAGGTCTATTCGTATC-CTATTCAAAGATCCTT 1015
Query 1063 GTGTAAGATTAGCCGGAGAAGTATGCAAAG-CTTTGACGGAACTCGCAGATAGCATCTCA 1121
|||| ||| ||||||||||| | ||||||| ||| | | |||||| | || | ||| | |
Sbjct 1016 GTGTTAGACTAGCCGGAGAAATCTGCAAAGTCTT-GTCTGAACTCTCCGAAAACAT-TAA 1073
Query 1122 AA-CC-ACCGTCATTGTTCACCGGAGATTCTATCCGATCA-TCTCCACGTGGCACTTCAA 1178
|| || || |||| || |||||||||||||| ||||| || |||| | | |||| || ||
Sbjct 1074 AAACCGAC-GTCAATGCTCACCGGAGATTCTCTCCGA-CAGTCTCGAAGCGGCA-TTAAA 1130
Query 1179 -GATCTTAATTCCGCTATCAAGTCTCAGCCTAAACTCTTCCTT-GGCTCTAACCTCCATC 1236
||||| || || | ||||| || || ||||| |||||| || ||||||||||| || |
Sbjct 1131 AGATCTCAACTCTACAATCAAATCACAACCTAAGCTCTTC-TTAGGCTCTAACCTTCA-C 1188
Query 1237 -GTCACA--A-TAATAAACACCAAAACGG 1261
|| ||| | ||| ||||||| ||||||
Sbjct 1189 AGTAACATCACTAACAAACACCTAAACGG 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5