BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17980.1 Length=789 Score E Sequences producing significant alignments: (Bits) Value Ahg890409 jgi|Araly1|890409|Al_scaffold_0007_2395 1166 0.0 Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1 58.4 8e-08 > Ahg890409 jgi|Araly1|890409|Al_scaffold_0007_2395 Length=786 Score = 1166 bits (631), Expect = 0.0 Identities = 720/763 (94%), Gaps = 5/763 (1%) Strand=Plus/Plus Query 1 ATGGGGAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60 Query 61 GGCTACTACTTGAGTAGAAAAATAGAAGGTCTCGAGATTGAGCTTGAAGTCATTCCTGTT 120 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 61 GGCTACTACTTGAGTAGAAAAGTAGAAGGTCTTGAGATTGAGCTTGAAGTCATTCCTGTT 120 Query 121 ATCGACTTATACAAATTTGATCCTTGGGAGTTGCCAGGTAAATCTTTCCTTCCAAATAGA 180 |||||||||||||||||||||||||| |||||||||| ||||||||||||||| || ||| Sbjct 121 ATCGACTTATACAAATTTGATCCTTGTGAGTTGCCAGATAAATCTTTCCTTCCGAACAGA 180 Query 181 GATTTGGAATGGTTCTTTTTCTGTCCAAGAGACAAAAAATATGCAAACGGTTCTCGAACC 240 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GATTTGGAATGGTTCTTTTTTTGTCCAAGAGACAAAAAGTATGCAAACGGTTCTCGAACC 240 Query 241 AATAGGGCTACAAAAGCGGGTTATTGGAAAGCAACTGGTAAAGACCGGAAAATCACTTGT 300 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 241 AATAGGGCTACAAAAGCAGGTTATTGGAAAGCAACCGGTAAAGACCGGAAAATCACTTGT 300 Query 301 AAATCATCGCATGTTATAGCTGGATACCGAAAAACCTTAGTTTTCTATGAAGGTCGTGCC 360 ||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||| Sbjct 301 AAATCGTCGCATGTTATAACTGGATACCGGAAAACCTTAGTTTTCTATGAAGGCCGTGCC 360 Query 361 CCATTAGGCGACAGAACTAATTGGTTTATGCATGAATATCGTCTATGCGATATTGATGAT 420 |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 361 CCATTAGGCGACAGGACTAATTGGTTTATGCATGAATATCGTCTATGCGAT---GATGAT 417 Query 421 CATTCACAAAAATCACCAAATTTCAAGGGAGCTTTTGCGTTATGTCGCGTAGTTAAGAAG 480 ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| Sbjct 418 CATTCACAAAAATCACCAAATGTCAAGGGAGCTTTCGTGTTATGTCGCGTAGTTAAGAAG 477 Query 481 AATGAACTGAAGaaaaattcgaaaagtttgaaaaataaaaaCGAACAAGACATTGGTTCT 540 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 478 AATGAACTGAAGACCAATTTGAAAAGTTTGAAAAATAAAAACGAACAAGACATTGGTTCT 537 Query 541 TGTTACTCTAGCCTCGCGACCTCTCCTTGTCGCGATGAAGCGTCGCAGATTCAATCGTTC 600 |||||||||||||| ||| ||||||||||||||| ||| |||||||| ||||||||||| Sbjct 538 GGTTACTCTAGCCTCACGAACTCTCCTTGTCGCGACGAAACGTCGCAGTTTCAATCGTTC 597 Query 601 AAGCCTTCTTCTACT-ACAAACGACTCTTCAAGCATTTGGATTTCTCCTGATTTCATCCT 659 ||||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||| Sbjct 598 AAGCCTTCTTCTACTGA-AAACGACTCCTCTAGCATTTGGATTTCTCCTGATTTCATCCT 656 Query 660 TGATTCGTCAAAGGATTATCCTCAGATTAAGGAGGTTGCTTCTGAGTGCTTTCCCAACTA 719 |||||| ||||||||||||||||||||| ||||||||||||| || | ||||||||||| Sbjct 657 TGATTCTTCAAAGGATTATCCTCAGATTCAGGAGGTTGCTTCCGAATATTTTCCCAACTA 716 Query 720 CCATTTTCCGGTCACCACGGCAAACCACCACGTGGAATTTCCG 762 | |||||||||||||||||||||||||||| |||||||||||| Sbjct 717 CAATTTTCCGGTCACCACGGCAAACCACCATGTGGAATTTCCG 759 > Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1 Length=973 Score = 58.4 bits (31), Expect = 8e-08 Identities = 37/40 (93%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 17 TGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCT 56 |||| || || ||||||||||||||||||||||||||||| Sbjct 88 TGCCACCTGGGTTTAGATTTCATCCAACTGATGAAGAGCT 127 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29125908588 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5