BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17980.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890409 jgi|Araly1|890409|Al_scaffold_0007_2395 1166 0.0
Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1 58.4 8e-08
> Ahg890409 jgi|Araly1|890409|Al_scaffold_0007_2395
Length=786
Score = 1166 bits (631), Expect = 0.0
Identities = 720/763 (94%), Gaps = 5/763 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60
Query 61 GGCTACTACTTGAGTAGAAAAATAGAAGGTCTCGAGATTGAGCTTGAAGTCATTCCTGTT 120
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCTACTACTTGAGTAGAAAAGTAGAAGGTCTTGAGATTGAGCTTGAAGTCATTCCTGTT 120
Query 121 ATCGACTTATACAAATTTGATCCTTGGGAGTTGCCAGGTAAATCTTTCCTTCCAAATAGA 180
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||
Sbjct 121 ATCGACTTATACAAATTTGATCCTTGTGAGTTGCCAGATAAATCTTTCCTTCCGAACAGA 180
Query 181 GATTTGGAATGGTTCTTTTTCTGTCCAAGAGACAAAAAATATGCAAACGGTTCTCGAACC 240
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GATTTGGAATGGTTCTTTTTTTGTCCAAGAGACAAAAAGTATGCAAACGGTTCTCGAACC 240
Query 241 AATAGGGCTACAAAAGCGGGTTATTGGAAAGCAACTGGTAAAGACCGGAAAATCACTTGT 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AATAGGGCTACAAAAGCAGGTTATTGGAAAGCAACCGGTAAAGACCGGAAAATCACTTGT 300
Query 301 AAATCATCGCATGTTATAGCTGGATACCGAAAAACCTTAGTTTTCTATGAAGGTCGTGCC 360
||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 AAATCGTCGCATGTTATAACTGGATACCGGAAAACCTTAGTTTTCTATGAAGGCCGTGCC 360
Query 361 CCATTAGGCGACAGAACTAATTGGTTTATGCATGAATATCGTCTATGCGATATTGATGAT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCATTAGGCGACAGGACTAATTGGTTTATGCATGAATATCGTCTATGCGAT---GATGAT 417
Query 421 CATTCACAAAAATCACCAAATTTCAAGGGAGCTTTTGCGTTATGTCGCGTAGTTAAGAAG 480
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 418 CATTCACAAAAATCACCAAATGTCAAGGGAGCTTTCGTGTTATGTCGCGTAGTTAAGAAG 477
Query 481 AATGAACTGAAGaaaaattcgaaaagtttgaaaaataaaaaCGAACAAGACATTGGTTCT 540
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATGAACTGAAGACCAATTTGAAAAGTTTGAAAAATAAAAACGAACAAGACATTGGTTCT 537
Query 541 TGTTACTCTAGCCTCGCGACCTCTCCTTGTCGCGATGAAGCGTCGCAGATTCAATCGTTC 600
|||||||||||||| ||| ||||||||||||||| ||| |||||||| |||||||||||
Sbjct 538 GGTTACTCTAGCCTCACGAACTCTCCTTGTCGCGACGAAACGTCGCAGTTTCAATCGTTC 597
Query 601 AAGCCTTCTTCTACT-ACAAACGACTCTTCAAGCATTTGGATTTCTCCTGATTTCATCCT 659
||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||
Sbjct 598 AAGCCTTCTTCTACTGA-AAACGACTCCTCTAGCATTTGGATTTCTCCTGATTTCATCCT 656
Query 660 TGATTCGTCAAAGGATTATCCTCAGATTAAGGAGGTTGCTTCTGAGTGCTTTCCCAACTA 719
|||||| ||||||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 657 TGATTCTTCAAAGGATTATCCTCAGATTCAGGAGGTTGCTTCCGAATATTTTCCCAACTA 716
Query 720 CCATTTTCCGGTCACCACGGCAAACCACCACGTGGAATTTCCG 762
| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 CAATTTTCCGGTCACCACGGCAAACCACCATGTGGAATTTCCG 759
> Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1
Length=973
Score = 58.4 bits (31), Expect = 8e-08
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 17 TGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCT 56
|||| || || |||||||||||||||||||||||||||||
Sbjct 88 TGCCACCTGGGTTTAGATTTCATCCAACTGATGAAGAGCT 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5