BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17990.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946413 jgi|Araly1|946413|scaffold_702642.1 560 6e-159
Ahg354950 jgi|Araly1|354950|fgenesh1_pg.C_scaffold_7002123 523 8e-148
Ahg354951 jgi|Araly1|354951|fgenesh1_pg.C_scaffold_7002124 503 1e-141
Ahg946414 jgi|Araly1|946414|scaffold_702643.1 231 5e-60
> Ahg946413 jgi|Araly1|946413|scaffold_702642.1
Length=856
Score = 560 bits (303), Expect = 6e-159
Identities = 375/410 (91%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 57 AGTTGAGAAAATTCGTGACGATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAG 116
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 1 AGTTGAGAAAATTCGTGACGATGGGAGACGATGAGAAGTGCAGAAAGTTTTGGGATCGAG 60
Query 117 TGGCGGAATCTC-AGGGGTTCGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGT 175
||| |||||| | |||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 61 TGGGGGAATC-CGAGGGGTTCGATGTTGAGCATCTGATGGATAATAAACCAAAATCGTGT 119
Query 176 TTGCTCGACTATCAAAATTCTGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGG 235
|||||| ||||| ||||||||||||| |||| ||||||||||||| | || |||||||||
Sbjct 120 TTGCTCTACTATGAAAATTCTGATTTTGACAGTGAAGTCTTCCTTTATGCAAAGTTGGGG 179
Query 236 ATCCATAAATACAATATGTTACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGC 295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATCCATAAATACAATATGTTACAGGGGACGAATTTGCAGCTCTGTTGCATAGAGAAATGC 239
Query 296 AATTCACGAATTACCACAGTATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCA 355
||| |||||| || |||||||| || |||||||| ||||||||||||||||||||| |||
Sbjct 240 AATACACGAAGTAGCACAGTATATACCGGTTACTCTATAACTTTGGTTGCTAAGGACCCA 299
Query 356 TCTGCTGGCGGTTCCCTTGTAACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAA 415
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct 300 TCTGCTGGCGGTTCCCTTGTAACTTTTCAGACCAAGGTTGTTAATGAAGACAATTATAAA 359
Query 416 ATCAATACCCTCACGGTCTATCTTGCAAGACTTAAGTC-GCAACCACCAC 464
||||||||||| || |||| | |||||||||||||||| | |||||||||
Sbjct 360 ATCAATACCCTGACTGTCTCTATTGCAAGACTTAAGTCCG-AACCACCAC 408
Score = 322 bits (174), Expect = 3e-87
Identities = 221/242 (91%), Gaps = 10/242 (4%)
Strand=Plus/Plus
Query 585 GTAGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAAT 644
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 603 GTAGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAAT 662
Query 645 GCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT 722
Query 705 ---GGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT-- 758
||||||||||| |||||||||||| | ||||| | |||||||||||||||||||
Sbjct 723 AATGGTCACAAGCCACCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAA 781
Query 759 CA-GGGGCTTCTCACACTCGA-GTTCGATACTCGGTATGCAAAAACTCTTCTGTAAGGTA 816
|| |||||| || | |||| | |||||||| ||||||||||||||||||||||||||| |
Sbjct 782 CAAGGGGCTCCTTAAACTC-ATGTTCGATAATCGGTATGCAAAAACTCTTCTGTAAGGCA 840
Query 817 GT 818
||
Sbjct 841 GT 842
> Ahg354950 jgi|Araly1|354950|fgenesh1_pg.C_scaffold_7002123
Length=846
Score = 523 bits (283), Expect = 8e-148
Identities = 355/390 (91%), Gaps = 4/390 (1%)
Strand=Plus/Plus
Query 77 ATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTC-AGGGGTT 135
|||| ||||||||||||||||||| |||||||| |||||||| |||||| | |||||||
Sbjct 1 ATGGGAGACGATGAGAAGTGCAGAAAGTTTTGGGATCGAGTGGGGGAATC-CGAGGGGTT 59
Query 136 CGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGTTTGCTCGACTATCAAAATTC 195
||||||||||||| |||||||| | ||||||||||||||||||||| ||||| |||||||
Sbjct 60 CGATGTTGAGCATCTGATGGATAATAAACCAAAATCGTGTTTGCTCTACTATGAAAATTC 119
Query 196 TGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTT 255
|||||| |||| ||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 120 TGATTTTGACAGTGAAGTCTTCCTTTATGCAAAGTTGGGGATCCATAAATACAATATGTT 179
Query 256 ACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGT 315
|||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||
Sbjct 180 ACAGGGGACGAATTTGCAGCTCTGTTGCATAGAGAAATGCAATACACGAAGTAGCACAGT 239
Query 316 ATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGT 375
|| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 ATATACCGGTTACTCTATAACTTTGGTTGCTAAGGACCCATCTGCTGGCGGTTCCCTTGT 299
Query 376 AACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTA 435
|||||||||||||||||||||| | |||||| ||| ||||||||||||||| || ||||
Sbjct 300 AACTTTTCAGACCAAGGTTGTTAATGAAGACAATTATAAAATCAATACCCTGACTGTCTC 359
Query 436 TCTTGCAAGACTTAAGTC-GCAACCACCAC 464
| |||||||||||||||| | |||||||||
Sbjct 360 TATTGCAAGACTTAAGTCCG-AACCACCAC 388
Score = 468 bits (253), Expect = 4e-131
Identities = 323/355 (91%), Gaps = 12/355 (3%)
Strand=Plus/Plus
Query 467 GATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATT 526
|||||| ||||||||| |||||||||| ||||| | ||||||||| |||||||||||||
Sbjct 495 GATGAAAAAATCGGAGCTGCGAAAACATAACTGGATCCGTCTATACATGGAACTTGCATT 554
Query 527 CATCCATGCAAATCAGTG-TCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGG 585
||||||||||||| || | |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 555 CATCCATGCAAATGAG-GATCTTCCAAATCCCAATCTATCAAATTTGGTTATTATGAAGG 613
Query 586 TAGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAATG 645
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 614 TAGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAATG 673
Query 646 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT- 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAATA 733
Query 705 --GGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--C 759
||||||||||| |||||||||||| | ||||| | ||||||||||||||||||| |
Sbjct 734 ATGGTCACAAGCCACCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAAC 792
Query 760 A-GGGGCTTCTCACACTCGA-GTTCGATACTCGGTATGCAAAAACTCTTCTGTAA 812
| |||||| || | |||| | |||||||| |||||||||||||||||||||||||
Sbjct 793 AAGGGGCTCCTTAAACTC-ATGTTCGATAATCGGTATGCAAAAACTCTTCTGTAA 846
> Ahg354951 jgi|Araly1|354951|fgenesh1_pg.C_scaffold_7002124
Length=849
Score = 503 bits (272), Expect = 1e-141
Identities = 325/350 (93%), Gaps = 5/350 (1%)
Strand=Plus/Plus
Query 467 GATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATT 526
|||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 501 GATGAAGAAATCGGAGTTGCGAAAACATGACTGGATTCGTCTATACATGGAACTTGCATT 560
Query 527 CATCCATGCAAATCAGTGTCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGGT 586
||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 561 CATCCATGCAAATAAGTATCTTCCAAATCCCAATCTATCAAATTTGGTTATTATGAAGGT 620
Query 587 AGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAATGC 646
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 621 AGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAATGC 680
Query 647 AGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAATGG 706
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 AGTTTTCTACATACGGTACAGGTACTATCCTAATAAGGGACGGGCTCCTAAGGGTAATGG 740
Query 707 TCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--CAGGG 763
|||||||||||||||||||||| | ||||| | ||||||||||||||||||| || ||
Sbjct 741 TCACAAGCCTCCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAACAAGG 799
Query 764 G-CTTCTCACACTCGAGTTCGATACTCGGTATGCAAAAACTCTTCTGTAA 812
| || |||| ||||| ||| |||| |||||||||||||||||||||||||
Sbjct 800 GACTCCTCAAACTCGTGTTTGATAATCGGTATGCAAAAACTCTTCTGTAA 849
Score = 499 bits (270), Expect = 1e-140
Identities = 349/387 (90%), Gaps = 6/387 (2%)
Strand=Plus/Plus
Query 80 GAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTC-AGGGGTTCGA 138
|||||| ||||||||||||||||||||||| |||||||| |||||| | ||||||||||
Sbjct 10 GAAGACTATGAGAAGTGCAGAGAGTTTTGGAATCGAGTGGGGGAATC-CGAGGGGTTCGA 68
Query 139 TGTTGAGCATTTGATGGATGACAA-ACCAAAATCGTGTTTGCTCGACTATCAAAATTCTG 197
||||||||||||||||||| | || |||| || |||||||||| |||||||||||||||
Sbjct 69 TGTTGAGCATTTGATGGAT-AAAATACCAGGATGGTGTTTGCTCCACTATCAAAATTCTG 127
Query 198 ATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTTAC 257
||||||||| | ||||||||||| | || ||||||||||||||||||||||||||| |||
Sbjct 128 ATTTCGACAGTAAAGTCTTCCTTTATGCAAAGTTGGGGATCCATAAATACAATATGCTAC 187
Query 258 AGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGTAT 317
|||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 188 AGGGGACGAATTTGGAGCTCAGTTGCATAGAGAAATGCAATTCACGACCTACCCCAGCAT 247
Query 318 GTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGTAA 377
|| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TTACCGGCTACTCTATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGTAA 307
Query 378 CTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTATC 437
|||||||||||||||||||| |||||| | ||| ||||||||||||||| || |||| |
Sbjct 308 CTTTTCAGACCAAGGTTGTTAACGAAGGCCATTATAAAATCAATACCCTGACTGTCTCTA 367
Query 438 TTGCAAGACTTAAGTC-GCAACCACCA 463
|||||||||||||||| | ||||||||
Sbjct 368 TTGCAAGACTTAAGTCCG-AACCACCA 393
> Ahg946414 jgi|Araly1|946414|scaffold_702643.1
Length=378
Score = 231 bits (125), Expect = 5e-60
Identities = 200/235 (85%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 585 GTAGCTGTAGAAACTGAGGAAAATGTGAAG-CAGCCAAATGAGAGACTCAAGGCCAGAAA 643
||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 126 GTAGCGGTAGAAACTGAGGAAAATGTGAAGCCA-CCAAATGAGAGACTCAAGGCCAGAAA 184
Query 644 TGCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAA 703
|||||||||||||||| |||||| ||||||||| |||||||| |||||||||| |||| |
Sbjct 185 TGCAGTTTTCTACATAAGGTACATGTACTACCCGAATAAGGGTCGGGCTCCTACGGGTCA 244
Query 704 TGGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--CA 760
| ||||||| ||||||||||||||| | ||||| | |||||||||| ||||||| ||
Sbjct 245 TTGTCACAAACCTCCCCGTGATCGCGTAGCTAT-AGTAAAAAGAACCATGGACAAGAACA 303
Query 761 GGGGCTTCT-CACACTCGAGTTCGATA-CTCGGTATGCAAAAACTCTTCTGTAAG 813
|| | || ||| ||||||||||| | ||| | ||||| ||||| ||||||
Sbjct 304 CCGGATACTTCACTCTCGAGTTCGAGGGCA-GGTTTTCAAAATCTCTTTTGTAAG 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5