BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18010.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946406 jgi|Araly1|946406|scaffold_702635.1 3193 0.0
> Ahg946406 jgi|Araly1|946406|scaffold_702635.1
Length=1984
Score = 3193 bits (1729), Expect = 0.0
Identities = 1896/1978 (96%), Gaps = 6/1978 (0%)
Strand=Plus/Plus
Query 300 TCTTTTTCTGAGATCTAAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 359
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTTATCTGAGATCTGAGAAGATGAAAACAAGACGTGGGAAACGTCCTGAGAGGTTTTG 60
Query 360 GCCATCAATTGTGATGAATAAATGGTTAAACAGAAAACCTAAAGTTTACGATTTTAGCGA 419
||| || |||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 61 GCCTTCGATTGTGATGAATAAATGGTTGAACATAAAACCTAAAGTTTACGACTTTAGCGA 120
Query 420 AGACGAAATTGATACAGAACCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACGAAATTGATACAGAGCCTGAGAGCGAAGACGATGTATGTTCGGTCAAAGACGTCCC 180
Query 480 AAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGTAGCGAAGCTGA 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TAATGTTCACTGTGTAACTGATGAAGACAGCCATAATGGTCGTCGAGGAAGCGAAGCTGA 240
Query 540 TCACGGCAATAATATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAAAGGAAACA 599
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TCACGGCAATATTATTTCAGATGGTGGTGTGAGTGTGAGGGGTGGTTACCAGAGGAAACA 300
Query 600 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGCGAGGCAAATCGGAGACTTTGAGAGCTCAATACATTAACACAAAGGATATCAAAGT 360
Query 660 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCTCCGATGATCTCGAGATTGAAGA 719
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GACGGTGGCTACATGGAACGTCGCCGGAAAACGTCCCGCCGATGATCTCGAGATTGAAGA 420
Query 720 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATTATCGGGTTTCAAGAAGTGGTTCC 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TTGGCTCTCTACTGATAATCCTTCAGATATTTACATCATCGGGTTTCAAGAAGTGGTTCC 480
Query 780 ATTAAACGCTGGAAACGTTTTCGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTAAACGCTGGAAACGTTTTTGGAGCAGAAGATAGAGGTCCGATTCCGAAATGGGAATC 540
Query 840 GATAATTCGTAGAACACTAAACAAATCCAATAAAGAATCAGTTTATGATCAATCGCCAAG 899
|||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 541 GATAATCCGTAGAACACTGAACAAATCCAATAAAGAATCGGTCGATGATCAATCGCCAAG 600
Query 900 CTGCAACAACAACGCTCTTCATAGATCTCACAGCGCGCCGTCGTCTCCTATCTTGGCACA 959
|||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 601 CTGCAACAACAACGTTCTTCATAGATCTCACAGCGCGCCCTCGTCTCCTATTTTAGCACA 660
Query 960 AGAAGCAAACTCCATTATCTCTCATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 1019
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAAGCAAACTCCATTATCTCTGATGTCATGGTAGAGAATCTAGTTGCGGACCACTCGCT 720
Query 1020 GGATTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCACA 1079
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 AGACTTAGCTACAAACGAGTTCATCGATGCTGCAACCGCTTTACCGAGCCTTGAACCAGA 780
Query 1080 GCGGAATCCGAACATGGACTGGCCGGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 1139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 GCGGAATCCGAACATGGACTGGCCAGAACTAGCTTTAGATAGCAACCCTCAGATAGTTGG 840
Query 1140 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGCTACC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 ATCAGAGGGGAAGCTAAGGAGGGTATTTAGCAGCAACGCGACGCTAGGATTTAAGTTACC 900
Query 1200 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACAATTGAAACGCTCACG 1259
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 901 GGAGAATCCATCAGGAGCTAGTAGATTTGCTTCGGAAGCAAGACACTTGAAACGGTCACG 960
Query 1260 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGAGATTGATAATAGGTC 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 961 GAGCTTTGAAACTTTAAACTTGAGTTGGAATGATATAAAAGAAGATATTGATAATAGTTC 1020
Query 1320 CTCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCCTCCTCGTCCGAAGCGGAAGAAGCTGCAAAAATCATGCATGATGATTCATCAGACGG 1080
Query 1380 AGATTCGTCTTCCCAGGACGAAGAGGATGGTGACAAGATCAGAAATAGTTATGGATTGCC 1439
|||||||||||| |||| || |||||||| |||||||||||||||||||||||||| ||
Sbjct 1081 AGATTCGTCTTCAGAGGAAGAGGAGGATGGCGACAAGATCAGAAATAGTTATGGATTACC 1140
Query 1440 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGAAGATTTGGTGGAGGAGTGTCGGAAAGTGAAAGATAGTCAAAAGTATGTAAGGATAGT 1200
Query 1500 AAGTAAGCAAATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1559
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAGTAAGCAGATGGTTGGGATCTATGTATCGGTTTGGATCCGACGACGGTTAAGAAGACA 1260
Query 1560 TGTCAACAACCTGAAAGTCTCACCGGTCGGAGTTGGCTTGATGGGCTACATGGGAAACAA 1619
|||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 TGTCAACAACTTGAAAGTCTCGCCGGTCGGAGTTGGCTTGATGGGTTACATGGGAAACAA 1320
Query 1620 GGGATCAGTGTCGATTAGCATGACGTTGTATCAATCACGGATGTGTTTTGTGTGCTCACA 1679
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1321 GGGATCAGTGTCGATTAGCATGACATTATATCAATCACGAATGTGTTTTGTGTGTTCACA 1380
Query 1680 CTTAACTTCCGGCCACAAAGACGGTGCTGAGCAACGCCGGAATGCTGACGTGTACGAAAT 1739
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1381 CTTAACTTCTGGCCACAAAGACGGTGCAGAGCAACGCCGTAATGCTGACGTGTACGAAAT 1440
Query 1740 CATACGTA-GGACTCGTTTTGCATCGGTTCTTGACACTGATCAACCAAGGACGATTCCAT 1798
|||||| | |||||||||| || ||||||||||| || ||||||||||| ||||||||||
Sbjct 1441 CATACG-ACGGACTCGTTTCGCCTCGGTTCTTGATACCGATCAACCAAGAACGATTCCAT 1499
Query 1799 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGTCAGACGGTG 1858
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1500 GTCACGATCAAGTATTTTGGTTCGGAGATTTGAACTACCGACTTAATATGGCAGACAGTG 1559
Query 1859 AAGTAAGAAAGCTTGTCTCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1918
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AAGTAAGAAAGCTTGTCGCACAAAAACGATGGGATGAGCTCAAGAACAGTGATCAGTTGA 1619
Query 1919 TTAGAGAATTAAGAAGAGGGCATGTTTTTGATGGATGGAGAGAAGGACCGATTAAATTCC 1978
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1620 TTAGAGAACTAAGAAGAGGGCATGTTTTCGATGGATGGAGAGAAGGACCGATTAAATTCC 1679
Query 1979 CTCCAACCTATAAATACGAATTCGATTCTGATCGTTACGCCGGAGAAAACTTGAGAGAAC 2038
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1680 CTCCGACCTATAAATACGAATTCGATTCAGATCGTTACGCCGGAGAAACCTTGAGAGAAG 1739
Query 2039 CG-GAGAAGAAGAGAGCTCCTGCTTGGTGTGATAGGATATTATGGTTAGGAAAAGGAATA 2097
| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 1740 -GAGAGAAGAAGAGAGCTCCTGCTTGGTGTGATAGAATATTATGGCTGGGAAAAGGAATA 1798
Query 2098 AGACAAGAATGTTATAAGAGATCGGAGATAAGAATGTCCGATCACCGGCCGGTGACTTCG 2157
|||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1799 AGACAAGAGTGTTATAAGAGATCGGAGATAAAAATGTCCGATCACCGGCCAGTGACTTCG 1858
Query 2158 ATTTTTAACGTTGGAGTTGAAGTGTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 2217
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1859 ATATTTAACGTCGGAGTTGAAGTTTTCGATCACCGGAAACTTCAAAGAGCTCTTCACGTT 1918
Query 2218 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCTTTTTGAGTCTAATAAGTGT 2275
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1919 AATAACGCAGCTGCTTCTGCTGTTCATCCTGAACCTTCCTTTTGAGTCTA-TA-GTGT 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5