BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18020.1
Length=2199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493070 jgi|Araly1|493070|fgenesh2_kg.7__2503__AT4G18020.2 3417 0.0
> Ahg493070 jgi|Araly1|493070|fgenesh2_kg.7__2503__AT4G18020.2
Length=2210
Score = 3417 bits (1850), Expect = 0.0
Identities = 2088/2197 (95%), Gaps = 39/2197 (2%)
Strand=Plus/Plus
Query 1 AGCTTGAGGAAGGATTTAAGCAGATCTGCAAGAAACACTCTCTCAGGTAAGTGTTTACtt 60
||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 49 AGCTTGAGGAAGGGTTTAAGCAGATCTGCAAGAAACACTCTCTC----AA-TGTTTACTT 103
Query 61 tttttCCGTAGAATCAAACCGGCGGCGACAGTGACGGCGGCGAAAAGCGGCGGTGTTGGC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 CTTTTCTGTAGAATCAAACCGGCGGCGACAGTGACGGCGGCGAAAAGCGGCGGTGTTGGC 163
Query 121 CGCAAAAACGATGCAAAACCAGCTATGGTCATTACCGCTAACGATTTATCAAAATGGGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CGCAAAAACGATGCAAAACCAGCTATGGTCATTACCGCTAACGATTTATCAAAATGGGAA 223
Query 181 AATTTTCCTAAAGGACTTAAGGTTCTTCTTCTCCTCAACGGCTGTGACAGCGACGGAGAT 240
| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 224 AGTTTTCCTAAAGGACTTAAGGTTCTTCTTCTCCTCAACGGCGGCGACAGCGACGGAGGT 283
Query 241 GGCTCCTCAGCCGCCGAGACTCGATCAGAGCTCGAATCAATGGACTATATCGTTACTACA 300
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 284 AGCTCCTCAGCCGCCGAGACTCGATCAAAGCTCGAATCAATGGATTATATCGTTACTACA 343
Query 301 TTCACCGATGAAACTGAAGCACTCTCTGCGGTTGTCAAGAACCCGGAGAGCTTCCACATT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 TTCACCGATGAAACTGAAGCACTCTCTGCGGTTGTCAAGAACCCGGAAAGCTTCCACATT 403
Query 361 GCCATCGTCGAGGTGAATATGAGCGCTGAGAGTGAGAGTTTCAAGTTTCTTGAGGCTGCC 420
||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||
Sbjct 404 GCCATCGTCGAGGTGAATACGAGCGCCGAGAACGAGAGTTTCAAGTTTCTTGAGGGGGCC 463
Query 421 AAAGACGTTCTTCCTACTATAATGATTTCAACCGATCATTGCATCACTACTACAATGAAA 480
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 464 AAAGAAGTTCTACCTACTATAATGATTTCAACTGATCATTGCATCACTACTACAATGAAA 523
Query 481 TGCATAGCGCTTGGTGCAGTTGAGTTCCTACAAAAACCGCTCTCACCGGAGAAATTAAAG 540
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 524 TGCATAGCGCTTGGTGCAGTGGAGTTCCTTCAAAAACCGCTCTCACCGGAGAAACTAAAG 583
Query 541 AACATTTGGCAGCATGTTGTTCATAAGGCATTCAATGATGGTGGAAGTAATGTTTCGATA 600
|||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| ||
Sbjct 584 AACATTTGGCAGCACGTTGTTCATAAGGCATTCAATGACGGTGGAACTAATATTTCGGTA 643
Query 601 TCACTTAAGCCAGTGAAAGAATCCGTTGTCTCGATGCTTCATCTTGAGACCGACATGACA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 644 TCACTTAAGCCAGTGAAAGAATCCGTTGTCTCGATGCTTCATCTTGATACCGACATGACA 703
Query 661 ATCGAGGAGAAAGATCCAGCGCCATCAACACCGCAATTGAAACAAGA-TTCACGGTTACT 719
| ||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 704 AGCGATGAGAAAGATCCAGCGCCATCAACCCCGCAATTGAAACAA-ATTTCACGGTTACT 762
Query 720 AGACGGTGATTGCCAAGAGAACATAAATTTCTCGATGGAAAATGTAAATTCCTCGACCGA 779
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AG--GG-GATTGCCAAGAGAACATAAATTTCTCGATGGAAAATGTAAATTCCTCGACCGA 819
Query 780 GAAAGATAACATGGAAGATCATCAAGACATCGGTGAATCTAAATCAGTCGACACTACAAA 839
||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 820 GAAGGATAACATAGAAG---ATCAAGATATCGGTGAATCTAAATCAGTCGACACTACAAA 876
Query 840 CCGCAAATTAGATGACGACAAAGTGGTTGTCAAAGAAGAGAGAGGAGACAGTGAAAAAGA 899
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CCGCGAATTAGATGACGACAAAGTGGTTGTCAAAGAAGAGAGAGGAGACAGTGAAAAAGA 936
Query 900 AGAAGAAGGTGAAACCGGAGATCTCATAAGCGAGAAGACAGATTCAGTTGATATTCATAA 959
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 937 AGAAGAAGCTGAAACCGGAGATCTCATAAGTGAGAAGACAGATTCAGTTGATATTCATAA 996
Query 960 GAAAGAAGATGAGACTAAACCGATTAATAAATCATCCGGGATCAAGAACGTGTCTGGTAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GAAAGAAGATGAGACTAAACCGATTAATAAATCATCCGGGATCAAGAACGTGTCTGGTAA 1056
Query 1020 CAAAACTAGTCGAAAGAAGGTGGATTGGACACCAGAGCTGCACAAGAAGTTTGTGCAAGC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 CAAAACTAGTCGAAAGAAGGTGGATTGGACACCAGAGCTGCACAAGAAGTTCGTGCAAGC 1116
Query 1080 AGTTGAGCAACTCGGCGTTGATCAAGCGATACCCTCGCGGATTCTTGAGTTGATGAAAGT 1139
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1117 AGTTGAGCAACTCGGCCTTGATCAAGCAATACCTTCGCGGATTCTTGAGTTGATGAAAGT 1176
Query 1140 AGGCACCTTAACAAGACACAATGTAGCTAGTCACCTTCAGAAATTTCGGCAGCATAGGAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AGGCACCTTAACAAGACACAATGTAGCTAGTCACCTTCAGAAATTTCGGCAGCATAGGAA 1236
Query 1200 GAATATTCTTCCAAAGGATGATCATAACCATAGATGGATACAATCTAGAGAGAACCATAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GAATATTCTTCCAAAGGATGATCATAACCATAGATGGATACAATCTAGAGAGAACCATAG 1296
Query 1260 ACCAAATCAACGTAATTATAACGTTTTTCAACAGCAACACCGTCCCGTGATGGCTTATCC 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1297 ACCAAATCAACGTAATTATAACGGTTTTCAACAGCAACACCGTCCCGTGATGGCTTATCC 1356
Query 1320 CGTTTGGGGTCTTCCCGGTGTTTATCCGCCAGGAGCGATTCCACCTTTGTGGCCACCGCC 1379
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1357 CGTTTGGGGTCTTCCCGGTGTTTATCCGCCGGGAGCGATTCCACCTTTGTGGCCGCCGCC 1416
Query 1380 GCTGCAGTCCATTGGTCAACCACCTCCGTGGCATTGGAAACCACCTTATCCAACGGTGAG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GCTGCAGTCCATTGGTCAACCACCTCCGTGGCATTGGAAACCACCTTATCCAACGGTGAG 1476
Query 1440 CGGTAATGCATGGGGTTGTCCGGTTGGACCGCCTGTGACCGGATCATATATTACTCCTTC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 CGGTAATGCATGGGGTTGTCCGGTTGGACCGCCTGTGACCGGATCATATATTACTCCTTC 1536
Query 1500 GAATACTACCGCCGGCGGATTTCAATATCCCAACGGAGCTGAAACCGGCTTCAAAATAAT 1559
||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1537 GAATATTACCGCCGGCGGATTTCAATATTCTAACGGAGCTGAAACCGGCTTCAAAATAAT 1596
Query 1560 GCCGGCGAGTCAGCCGGACGAGGAAATGTTAGATCAAGTGGTTAAAGAAGCGATAAGCAA 1619
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1597 GCCGGCGACTCAGCCGGACGAGGAAATGATAGATCAAGTGGTTAAAGAAGCGATCAGCAA 1656
Query 1620 ACCGTGGCTGCCGCTACCGCTCGGGCTAAAACCGCCGTCCGCGGAGAGCGTTTTGGCTGA 1679
||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1657 ACCGTGGCTACCGCTACCGCTCGGGCTAAAACCGCCTTCCGCGGACAGTGTTTTGGCTGA 1716
Query 1680 GCTAACGCGTCAAGGCATCTCAGCCGTCCCTTCTTCTTCTTGTCTAATCAACGGCTCTCA 1739
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1717 GCTATCGCGTCAAGGCATCTCAGCCGTCCCTTCTTCTTCTTGTCTAGTCAACGGCTCTCA 1776
Query 1740 TCGTCTCCGCTGACGTGTCCATGATGAAACAGAACCCGCAGATATGATGACGTCATGCGT 1799
|||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 1777 TCGTCTACGCTGACGTGTCCATGA--AA-CAGAACCCGTAGATATGATGACGTCATGCGT 1833
Query 1800 GGCGTACTTGTCCGTGTCTGACGATCCGAAGCGGGAACTGATTCGGATCCTGAGAgttgt 1859
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1834 GGCGTACTTGTCCGTGTCTGACGGTCCGAAGCGGGAACTGATTCGGATCCTGAGAGTTGT 1893
Query 1860 tttttaattgttgttttt-aattttttgttgtCATAAAAACATTTGTCTCTATTGGTATT 1918
|||||||||||| ||||| || |||||||||||||||||| | ||| |
Sbjct 1894 TTTTTAATTGTTCTTTTTTAAATTTTTGTTGTCATAAAAA--T--------ATT---A-- 1938
Query 1919 ATTAAAGAAGATCGGACGGTGGAGATAGAGG-CAACGATGTTAGTCTGAGGACCACAAGT 1977
|| |||||||||||||||||| |||| |||| ||||||||||| | ||||||||||||||
Sbjct 1939 AT-AAAGAAGATCGGACGGTGAAGAT-GAGGGCAACGATGTTAATTTGAGGACCACAAGT 1996
Query 1978 GGACTCTGCGGCTGTAAGTAGATCTCGGACACGGGATTTTGACAAGTCGGAATCTGACGT 2037
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1997 GGAATCTGCGGCTGTAAATAGATCTCGGACACGGGATTTGGACAAGTCGGAATCTGACGT 2056
Query 2038 GTGTGCGTACTCGCTTTTGTGGGTTGTCGAGAATTT-AATAGTTGACACTGTTTTAGGTG 2096
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2057 GTGTGTGTACTCGCTTTTGTGGGTTGTCGAGAATTTTAATAGTTGACACTGTTTTAGGTG 2116
Query 2097 GATATGAGATATGATGATGATAATAATAAAAAGGTACAACTCAAAGATTCCGTGATGACA 2156
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2117 -ATATGAGATATGATGATGATAATAATAAAAAG-TACAACTCGAAGATTCCGTGATGACA 2174
Query 2157 TTTTGTTCtttttttCTATAAATTCCAAGATACACAC 2193
|||||||||||||| ||||||||||||||||||||||
Sbjct 2175 TTTTGTTCTTTTTT-CTATAAATTCCAAGATACACAC 2210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82770102385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5