BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18040.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493066 jgi|Araly1|493066|fgenesh2_kg.7__2499__AT4G18040.1 1358 0.0
> Ahg493066 jgi|Araly1|493066|fgenesh2_kg.7__2499__AT4G18040.1
Length=942
Score = 1358 bits (735), Expect = 0.0
Identities = 876/943 (93%), Gaps = 14/943 (1%)
Strand=Plus/Plus
Query 1 ACGAGAGGAAGTACATTAGTTTGgagaagagtaatagaca-g-agagatagagagaaaga 58
||||| |||| |||||||||||||||||||| || ||| | | ||||| ||||| | |||
Sbjct 1 ACGAGTGGAAATACATTAGTTTGGAGAAGAGAAACAGAGAGGAAGAGAGAGAGACACAGA 60
Query 59 gaAGCAGTTCGGAGAAACAATGGCGGTAGAAGACACTCCCAAATCTGTTGTAACGGAAGA 118
|| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GAGGCAGTTCTGAGAAACAATGGCGGTAGAAGACACTCCCAAATCTGTTGTTACGGAAGA 120
Query 119 AGCTAAGCCTAATTCAATAGAGAATCCGATTGATCGATACCATGAGGAAGGTGATGATGC 178
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCAAACCCTAATTCTATAGAGAATCCGATTGATCGATACCATGAGGAAGGTGATGATGC 180
Query 179 CGAAGAAGGAGAGATCGCCGGAGGAGAAGGAGACGGAAACGTTGACGAATCGAGCAAATC 238
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CGAAGAAGGAGAGATCGTCGGAGGTGAAGGAGACGGAAACGTTGACGAATCGAGCAAATC 240
Query 239 CGGTGTTCCTGAATCGCATCCTCTGGAACATTCATGGACTTTCTGGTTCGATAATCCTGC 298
|| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 241 CGCTGTTCCTCAATCGCATCCTTTGGAACATTCATGGACTTTCTGGTTCGACAATCCTTC 300
Query 299 TGTGAAATCGAAACAAACCTCTTGGGGAAGTTCCTTGCGACCCGTGTTTACGTTTTCAAC 358
|||||||||||| |||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 301 TGTGAAATCGAAGCAAACCACTTGGGGAATTTCCTTGCGACCGGTGTTTACGTTTTCAAC 360
Query 359 TGTTGAGGAATTTTGGAGTTTGTACAACAACATGAAGCATCCGAGCAAGTTAGCTCACGG 418
||||||||||||||||||||||||||| ||| ||| |||||||| |||||||| ||| ||
Sbjct 361 TGTTGAGGAATTTTGGAGTTTGTACAATAACTTGAGGCATCCGAACAAGTTAGTTCAAGG 420
Query 419 AGCTGACTTCTACTGTTTCAAACAC-ATCATTGAACCTAAGTGGGAGGATCCTATTTGTG 477
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 421 AGCTGACTTCTACTGTTTCAAACACAAT-ATCGAACCTAAGTGGGAGGATCCTATTTGTG 479
Query 478 CTAATGGAGGAAAATGGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCT 537
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 480 CAAATGGAGGCAAATGGACTATGTCTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCT 539
Query 538 ACACTTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAG 597
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 540 ACACTTTGCTTGCTTTGATTGGAGAACAGTTCGATCATGGAGATGAAATATGTGGAGCAG 599
Query 598 TTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTAAAAATGCTTCAAACG 657
|||| |||||||||||||||||||| || ||||| |||||||| ||||| ||||||||||
Sbjct 600 TTGTTAACATTAGAGGAAAGCAAGACAGAATATCCATTTGGACCAAAAACGCTTCAAACG 659
Query 658 AAGCTGCTCAGGTGAGCATTGGAAAACAATGGAAGGAGTTTCTCGATTACAACAACAGCA 717
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 660 AAGCTGCTCAGGTGAGCATTGGAAAGCAATGGAAGGAGTTTCTGGATTACAACAACAGCA 719
Query 718 TAGGTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAAGAACGCTTACA 777
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 720 TAGGTTTCATCATCCATGAGGATGCGAAGAAGCTCGACAGGAATGCAAGGAACGTTTACA 779
Query 778 CCGCTTGAAACCTCTCAAATCTTTGCATTGTTTCAATTACAGTTTTGTATGTGAGAGATC 837
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGCTTGAAACCTCTCAAATCTTTGCATTGTTTCAATTACAGTTTTGTATGTGAGAGATC 839
Query 838 TCTATTTAT--C-T--AAACATGACTTGACAGTCTGTCTTTGCT----AGTGTTGATTGT 888
||||||||| | | ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 840 TCTATTTATATCATCGAAACATGACTTGACACACTGTCTTTGCTCGTGAGTGTTGATTGT 899
Query 889 TCACGAAGCTCTAACATTTCATTTAGTAATATATTAGTATGGT 931
|||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 900 TCAC-AAGCTCTGACATTTCACTTAGTAATATATTAGTATGGT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5