BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18050.1
Length=3846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493065 jgi|Araly1|493065|fgenesh2_kg.7__2498__AT4G18050.1 5792 0.0
Ahg486718 jgi|Araly1|486718|fgenesh2_kg.5__2710__AT3G62150.1 401 2e-110
> Ahg493065 jgi|Araly1|493065|fgenesh2_kg.7__2498__AT4G18050.1
Length=3720
Score = 5792 bits (3136), Expect = 0.0
Identities = 3533/3726 (95%), Gaps = 21/3726 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAGAAATCTTCGAAGAAGAATGATGGTGGAAATCAGAAAGTGTCGTTTTTCAAA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGAAATCTCCGAAGAAGAATGATGGTGGAAATCAGAAAGTGTCGTTTTTCAAA 60
Query 61 CTCTTTTCGTTCGCCGACAAAACCGACGTAGTTTTGATGACCGTCGGGACTATTGCCGCC 120
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTGTTTTCGTTTGCCGACAAAACCGACGTAGTTTTGATGACCGTCGGGACTATCGCCGCC 120
Query 121 GCGGGTAACGGCCTTACTCAGCCGTTCATGACTCTAATCTTTGGCCAGCTCATTAACGCC 180
|||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 121 ATGGGTAACGGCCTAACTCAGCCGCTCATGACTCTAATCTTTGGCCAGCTCATAAATGCC 180
Query 181 TTTGGCACCACCGATCCAGATCATATGGTTAGAGAAGTGTGGAAGGTTGCTGTAAAGTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTGGCACCACCGATCCAGATCATATGGTTAGAGAAGTGTGGAAGGTTGCTGTAAAGTTT 240
Query 241 ATATACCTTGCAGTATACTCTTGTGTCGTCGCATTCCTCCAGGTATCATGCTGGATGGTA 300
|| |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 241 ATTTACCTTGCAGTATACTCTGGTGTCGTCGCCTTCCTCCAGGTCTCATGCTGGATGGTT 300
Query 301 ACGGGAGAACGTCAATCCGCCACAATTCGTGGTCTATACCTT-AAAACGATATTAAGACA 359
|| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 301 ACTGGAGAACGTCAATCCGCCACAATTCGTGGTCTATA-CTTGAAAACGATATTAAGACA 359
Query 360 AGATATTGGCTATTTCGATACTGAGACAAACACCGGAGAGGTTATCGGAAGAATGTCTGG 419
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 360 AGATATTGGCTACTTCGATACGGAGACAAACACCGGAGAGGTTATTGGAAGAATGTCTGG 419
Query 420 AGACACAATTTTGATTCAAGACGCCATGGGAGAAAAGGTTGGCAAATTCACACAACTA-C 478
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 420 AGACACAATTTTGATTCAAGACGCCATGGGAGAAAAGGTTGGAAAATTCATACAACTAGC 479
Query 479 TATGTACTTTCCTTGGAGGATTCGCGATTGCGTTTTATAAAGGCCCGCTTTTAGCTGGT- 537
||| || ||| |||||||||||| |||||| |||| ||||||| || ||| | | |
Sbjct 480 AATG-ACGTTCTTTGGAGGATTCGTGATTGCCTTTTCTAAAGGCTGGCAGTTAAC-GTTG 537
Query 538 GTTCTTTGCAGTTGTATCCCTCTGATTGTGATCGCAGGTGCAGCCATGTCTCTGATCATG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTCTTTGCAGTTGTATCCCTCTGATTGTGATCGCAGGTGCAGCCATGTCTCTGATCATG 597
Query 598 TCTAAAATGGCTGGTCGTGGTCAAGTCGCTTACGCAGAGGCTGGAAACGTAGTTGAACAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTAAAATGGCTGGTCGTGGTCAAGTCGCTTACGCAGAGGCTGGAAACGTAGTTGAACAA 657
Query 658 ACCGTTGGAGCCATTAGAACAGTAGTAGCGTTTACGGGAGAGAAACAAGCAACGGAAAAA 717
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 658 ACCGTCGGAGCCATTAGAACAGTAGTAGCGTTTACGGGGGAGAAACAAGCAACGGAAAAA 717
Query 718 TACGAAAGCAAGCTCGAGATCGCTTACAAGACAGTGGTTCAACAGGGTTTGATCTCTGGT 777
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 718 TACGAAAGCAAGCTCGAGATAGCTTACAAGACTGTGGTTCAACAGGGTTTGATCTCTGGT 777
Query 778 TTCGGCCTTGGTACAATGTTAGCCGTGATCTTTTGCAGCTACGGTTTAGCGGTTTGGTAT 837
| || ||||| |||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 778 CTAGGGCTTGGCACAATGCTAGCTGTGATATTTTGCAGCTACGGTTTAGCGGTTTGGTAT 837
Query 838 GGTGCAAAGCTGATAATGGAGAAAGGTTACAATGGCGGACAAGTCATCAATGTGATTTTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 838 GGTGCAAAGCTGATAATGGAGAAAGGTTACAATGGCGGACAAGTCATCAATATAATTTTC 897
Query 898 GCAGTCTTGACCGGAGGAATGTCGTTAGGGCAAACATCGCCAAGTTTGAATGCTTTCGCT 957
||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 898 GCAGTTTTGACTGGAGGAATGTCATTAGGGCAAACATCGCCGAGTTTGAATGCTTTCGCT 957
Query 958 GCTGGAAGAGCTGCCGCTTTCAAAATGTTCGAAACGATCAAGAGGAGTCCAAAGATTGAT 1017
|| || |||||||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 958 GCAGGGAGAGCTGCAGCTTTCAAAATGTTCGAAACTATCAAGAGGACTCCAAAGATTGAT 1017
Query 1018 GCTTACGATATGAGCGGTTCTGTTCTTGAGGATATTAGAGGAGACATTGAGCTTAAAGAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTTACGATATGAGCGGTTCTGTTCTTGAGGATATTAGAGGAGACATTGAGCTTAAAGAT 1077
Query 1078 GTTTACTTTAGGTATCCGGCTAGGCCTGATGTTCAAATCTTTGCTGGATTCTCACTCTTT 1137
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1078 GTTTACTTTAGGTATCCGGCTAGGCCCGATGTTCAAATCTTTGCTGGATTCTCGCTCTTT 1137
Query 1138 GTACCAAATGGCA-AGACGGTGGCTTTGGTGGGACAGAGCGGAAGCGGAAAATCGACGGT 1196
||| | || |||| | || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 GTATCGAACGGCACA-ACAGTTGCTTTGGTGGGACAGAGCGGAAGCGGAAAATCGACAGT 1196
Query 1197 TATCAGTCTAATCGAAAGGTTCTATGATCCGGAGTCAGGACAAGTATTGATAGACAACAT 1256
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 TATCAGTCTAATCGAGAGGTTCTATGATCCGGAGTCAGGTCAAGTATTGATAGACAACAT 1256
Query 1257 TGATTTGAAGAAACTTCAGCTCAAATGGATAAGAAGCAAAATCGGTTTGGTTAGCCAAGA 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGATTTGAAGAAACTTCAGCTCAAATGGATAAGAAGCAAAATCGGTTTGGTTAGCCAAGA 1316
Query 1317 ACCTGTCTTGTTTGCGACCACGATAAAGGAGAACATTGCTTATGGGAAAGAAGACGCGAC 1376
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1317 ACCTGTGTTGTTTGCGACCACAATAAGGGAGAACATTGCTTATGGGAAAGAAGACGCGAC 1376
Query 1377 TGATCAAGAGATTCGAACTGCGATTGAGCTCGCTAATGCGGCTAAATTCATTGATAAACT 1436
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 TGATCAGGAGATTCGAACTGCGATTGAGCTCGCTAATGCGGCTAAATTTATTGATAAACT 1436
Query 1437 CCCACAGGGTTTGGATACAATGGTAGGAGAGCACGGGACACAAATGTCTGGCGGGCAGAA 1496
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 CCCACAGGGTTTGGATACAATGGTAGGAGAGCACGGGACGCAAATGTCTGGCGGGCAGAA 1496
Query 1497 ACAGAGACTAGCAATCGCTAGGGCGATTTTGAAAAACCCTAAAATATTGCTTTTAGATGA 1556
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1497 ACAGAGGCTAGCGATCGCTAGGGCGATTTTGAAAAACCCTAAAATATTGCTTTTAGACGA 1556
Query 1557 AGCAACAAGCGCCTTAGACGCAGAATCCGAACGGATTGTTCAAGATGCGCTCGTGAACTT 1616
||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1557 AGCCACAAGCGCGTTAGACGCAGAATCCGAACGCATTGTTCAAGACGCGCTAGTGAACTT 1616
Query 1617 AATGTCAAACCGGACTACCGTTGTGGTCGCTCACCGGTTGACCACAATAAGAACTGCAGA 1676
||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1617 AATGTCAAATCGGACTACCGTTGTGGTTGCTCACCGTTTGACCACAATTAGAACTGCCGA 1676
Query 1677 CGTAATCGCTGTTGTCCACCAAGGAAAAATTGTCGAGAAAGGAACTCACGATGAGATGAT 1736
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 1677 CGTAATCGCTGTTGTCCACCAAGGGAAAATTGTCGAGAAAGGGACTCACGATGATATGAT 1736
Query 1737 TCAAGATCCCGAGGGAGCTTATTCACAGCTTGTTCGTCTTCAAGAAGGATCAAAAGAAGA 1796
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TCAAAATCCTGAGGGAGCTTATTCACAGCTTGTTCGTCTTCAAGAAGGATCAAAAGAAGA 1796
Query 1797 AGCTACCGAATCAGAGAGACCTGAAACAAGCTTAGACGTCGAGAGGTCAGGAAGTCTTAG 1856
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 1797 AGCTAACGAATCAGAGAGACCTGAAACGAGCTTAGACGTCGAGAGATCAGGAAGTCATAG 1856
Query 1857 GCTATCATCTGCGATGAGAAGATCCGTTAGCCGGAATTCATCGAGCAGCCGCCATTCTTT 1916
| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1857 GTTATCATCGGCAATGAGAAGATCCGTTAGCCGGAATTCATCGAGCAGTCGCCATTCTTT 1916
Query 1917 CTCTCTCGCTTCCAATATGTTCTTTCCGGGAG---TTAACGTCAACCAAACCGACGAGAT 1973
|||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1917 CTCTCTCGCTTCCAATATATTCTTTCCGGGAGCAGTTAACATCAACCAAACCGATGAGAT 1976
Query 1974 GGAAGACGAGGAAAACAAC-GTGAGGCACAAGAAAGTGTCATTAAAACGACTTGCTCACC 2032
|||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 1977 CGAAGACGAGGAAAA-AACCGTGAGACACAAGAAAGTGTCATTAAAACGGCTTGCTCGCC 2035
Query 2033 TTAACAAACCGGAAATTCCGGTTTTGGTACTCGGTTCAATTGCTGCAATGGTTCATGGAA 2092
| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 2036 TCAACAAACCGGAAATTCCGGTTTTATTGCTCGGTTCAATTGCTGCAATGGTTCACGGAA 2095
Query 2093 CGGTGTTTCCCATCTTCGGTTTATTGCTTTCCAGCTCAATCAATATGTTCTATGAACCAG 2152
|| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 2096 CGTTGTTTCCCATCTTCGGTTTACTGCTTTCGAGCTCGATCAATATGTTCTATGAACCAG 2155
Query 2153 CAAAGATACTGAAGAAAGATTCACATTTTTGGGCGCTGATTTATATCGCTCTCGGTTTAA 2212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 CAAAGATACTGAAGAAAGATTCACATTTTTGGGCGCTGATTTATATCGCTCTCGGTTTAG 2215
Query 2213 CCAATTTCGTCATGATCCCGGTCCAAAACTATTTCTTTGGAATCGCTGGAGGGAAATTGA 2272
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2216 CCAATTTCTTCATGATCCCGATCCAAAACTATTTCTTTGGAATCGCTGGAGGGAAATTGA 2275
Query 2273 TTAAACGCATCCGATCAATGTGTTTTGATAAAGTGGTTCATCAAGAAATCAGTTGGTTCG 2332
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 TTAAACGCATCAGATCAATGTGTTTTGATAAAGTGGTTCATCAAGAAATCAGTTGGTTCG 2335
Query 2333 ATGACACAGCCAATTCCAG-G--AG---TTTGGTAGGAGATGCATTGGCGTTAATAGTAC 2386
|||| ||||| |||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 2336 ATGATACAGCAAATTCCAGCGTGAGGAGTTTGGTAGGAGATGCATTGGCGTTAATAGTAC 2395
Query 2387 AAAACATAGCTACTGTAACCACTGGGTTGATAATAGCGTTTACAGCGAATTGGATCCTAG 2446
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2396 AAAACATAGCTACTGTAACCACCGGGTTGATAATAGCGTTTACAGCGAATTGGATGCTAG 2455
Query 2447 CTCTCATAGTTCTTGCTCTCTCACCATTTATTGTCATCCAAGGATATGCTCAAACCAAGT 2506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 CTCTCATAGTTCTTGCTCTCTCACCATTTATTGTCATCCAAGGATATGCTCAAACCAAGT 2515
Query 2507 TCTTGACTGGTTTCAGCGCTGATGCTAAGGCGATGTATGAAGAAGCGAGTCAAGTGGCGA 2566
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 TCCTGACTGGTTTCAGCGCAGATGCTAAGGCGATGTATGAAGAAGCGAGTCAAGTGGCGA 2575
Query 2567 ATGATGCAGTGAGCAGCATAAGAACGGTTGCATCTTTCTGTGCAGAGGAG-AAAGTGATG 2625
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 2576 ATGATGCAGTGAGCAGCATTAGAACGGTTGCATCTTTCTGTGCAGAGG-GCAAAGTGATG 2634
Query 2626 GATTTATACCAACAAAAATGCGATGGACCGAAGAAGAACGGTGTCCGGTTAGGTCTTTTG 2685
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2635 GATTTATACCAACAAAAATGCGATGGACCGAAGAAGAACGGTGTTCGGTTAGGTCTTTTG 2694
Query 2686 AGCGGTGCTGGTTTCGGTTTCTCATTCTTTTTCCTCTATTGCATCAATTGTGTATGTTTC 2745
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2695 AGCGGTGCGGGTTTCGGTTTCTCTTTCTTTTTTCTCTATTGCATCAATTGTGTATGTTTC 2754
Query 2746 GTCAGTGGTGCCGGGTTGATTCAAATTGGTAAAGCCACATTTGGTGAAGTCTTCAAGGTT 2805
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2755 GTCAGTGGTGCGGGGTTGATTCAAATAGGTAAAGCCACATTTGGTGAAGTCTTCAAGGTT 2814
Query 2806 TTCTTTGCATTGACGATTATGGCGATTGGAGTTTCTCAAACGAGTGCTATGGCACCTGAT 2865
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2815 TTCTTTGCATTGACGATCATGGCTATTGGAGTTTCTCAAACGAGTGCTATGGCACCTGAT 2874
Query 2866 TCAAACAAAGCTAAAGACTCTGCAGCTTCGATTTTCGATATTCTCGATAGTACACCGAAG 2925
|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||
Sbjct 2875 ACAAACAAAGCTAAAGACTCTGCAGCTTCAATTTTCGATATTCTTGATAGTAAACCAAAG 2934
Query 2926 ATTGATTCTAGCTCTGATGAAGGTACAACGTTACAAAACGTTAATGGTGATATCGAATTC 2985
|| ||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 2935 ATCGATTCGAGCTCTGATGAAGGTACTACGTTACAAAACGTTCATGGCGATATCGAATTC 2994
Query 2986 CGACATGTTAGTTTCCGATACCCAATGCGACCGGACGTTCAGATTTTCAGAGATTTGTGC 3045
||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||
Sbjct 2995 CGACATGTTAGTTTCCGGTACCCGATGCGACCGGACGTTCAGATTTTCCGTGATTTGTGC 3054
Query 3046 TTGACTATCCCTTCTGGAAAGACCGTTGCACTTGTTGGAGAGAGCGGGAGCGGGAAATCA 3105
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3055 TTGACTATCCCTTCCGGAAAGACCGTTGCACTTGTTGGAGAGAGCGGGAGCGGGAAATCG 3114
Query 3106 ACGGTGATAAGCATGATTGAGAGGTTTTATAATCCAGATTCAGGCAAGATTTTGATCGAT 3165
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3115 ACGGTGATCAGCATGATTGAGAGGTTTTATAATCCAGATTCAGGCAAGATTTTGATCGAT 3174
Query 3166 CAGGTGGAGATTCAGACATTTAAATTGAGTTGGTTAAGGCAACAGATGGGTTTGGTTAGT 3225
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3175 CAGGTGGAAATTCAGACATTTAAATTGAGTTGGTTAAGGCAACAGATGGGTTTGGTTAGT 3234
Query 3226 CAAGAACCGATTTTGTTCAACGAGACGATCAGATCAAACATAGCTTATGGTAAAACCGGT 3285
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 3235 CAGGAACCGATTTTGTTCAACGAGACGATCAGATCAAACATAGCTTATGGAAAAACTGGT 3294
Query 3286 GGAGCCACAGAGGAAGAGATTATAGCAGCAGCAAAAGCCGCAAACGCACATAACTTCATC 3345
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3295 GGAGCCACAGAGGAAGAGATTATAGCAGCAGCAAAAGCCGCAAATGCACATAACTTCATC 3354
Query 3346 AGCTCATTGCCTCAGGGTTACGATACGTCGGTTGGAGAACGCGGTGTTCAGCTATCGGGC 3405
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3355 AGCTCATTGCCTCAGGGTTATGATACGTCGGTTGGAGAACGCGGTGTTCAGCTATCGGGC 3414
Query 3406 GGTCAGAAACAGAGGATTGCGATTGCGCGCGCGATTTTGAAAGATCCTAAGATTTTGTTG 3465
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 3415 GGTCAGAAGCAGAGGATTGCGATTGCGCGTGCGATTTTGAAAGATCCTAAGATCTTGTTG 3474
Query 3466 CTTGATGAAGCGACGAGTGCATTGGACGCAGAATCTGAGCGTGTTGTTCAGGATGCACTT 3525
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 3475 CTCGATGAAGCGACGAGTGCATTGGACGCAGAATCTGAGCGTGTGGTTCAGGATGCGCTT 3534
Query 3526 GATCGAGTTATGGTTAATCGAACCACTGTAGTTGTGGCTCATCGGCTTACGACGATTAAG 3585
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3535 GATCGAGTTATGGTGAATCGAACCACTGTAGTTGTGGCTCATCGGCTCACGACGATTAAG 3594
Query 3586 AACGCAGACGTGATCGCGGTTGTGAAAAACGGAGTTATTGCTGAGAAAGGAAGGCATGAG 3645
|| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 3595 AATGCAGACGTGATTGCGGTTGTGAAAAACGGCGTTATTGCGGAAAAAGGAAGGCATGAG 3654
Query 3646 ACACTGATGAAGATTTCAGGTGGTGCTTATGCTTCTCTTGTCACTCTGCACATGAGTGCA 3705
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 3655 ACACTGATGAAGATTTCAGGTGGCGCTTATGCATCTCTTGTCACTCTGCACATGAGTGCA 3714
Query 3706 AATTAA 3711
||||||
Sbjct 3715 AATTAA 3720
> Ahg486718 jgi|Araly1|486718|fgenesh2_kg.5__2710__AT3G62150.1
Length=3868
Score = 401 bits (217), Expect = 2e-110
Identities = 1107/1520 (73%), Gaps = 127/1520 (8%)
Strand=Plus/Plus
Query 344 AAACGATATTAAGACAAGATATTGGCTAT-TTCGATACT-GAGACAAACACCGGAGAGGT 401
|||| || || |||||||| |||| || | |||||| | || || ||||| ||||| ||
Sbjct 479 AAACTATTTTGAGACAAGACATTGCCT-TCTTCGAT-GTCGAAACCAACACAGGAGAAGT 536
Query 402 TATCGGAAGAATGTCTGGAGACACAAT-TTTGATTCAAGACGCCATGGGAGAAAAGGTTG 460
| | ||||||||||| || ||||| | || || |||||||||||||||||||||||||
Sbjct 537 TGTTGGAAGAATGTCAGGTGACACTGTGCTT-ATACAAGACGCCATGGGAGAAAAGGTTG 595
Query 461 GCAAATTC-ACACAACTACTATGTAC-TTTCCTTGGAGGATTCGCGATTGCGTTTTA-TA 517
| || | | |||| | ||| || ||| |||| ||||| | ||| || ||| | |
Sbjct 596 G-GAAGGCTATACAATTGGTATCAACGTTT-GTTGGTGGATTTGTGATAGC-TTTCACTG 652
Query 518 AAGGCCCGCTT-TTAGCTGGT-GTTCTTTGCA-GTTGTATCCCTCTGATTGTGATCG-CA 573
|||| |||| ||| | | | || | | | || || || || | || || | |
Sbjct 653 AAGGATGGCTTCTTA-C-ATTAG-TCATGGTATCTTCAATTCCGCTTCTAGTAAT-GACT 708
Query 574 GGTGCAGC-CAT-GTC--TCTGATCATGTCTAAAATGGCTGGTCGTGGTC-AAGTCGCTT 628
|||||||| | | | | || | |||| || ||||||||| |||||| | || | |||
Sbjct 709 GGTGCAGCTC-TAG-CAATC-G-TCATTTCCAAAATGGCTTCTCGTGGACAAACT-TCTT 763
Query 629 ACGCAG-AGGCTG-GAAACGTAGTTGAACAAACCGTTGGAG-CCATTAGAACAGTAGTAG 685
| || | | |||| | |||||||| ||||| ||||| | | |||||||| || | |
Sbjct 764 ATGC-GAAAGCTGCG-GTTGTAGTTGAGCAAACAGTTGG-GTCGATTAGAACTGTTGCAT 820
Query 686 CGTTTACGGGAGAGAAACAAGC-A-ACGGAAAAATACGA-AAGCAAGCTCGAGATC-GCT 741
||||||| |||||||||||||| | | | || ||| | |||| | || | || ||
Sbjct 821 CGTTTACCGGAGAGAAACAAGCGATA-AG-CAATTACAATAAGC-ATCTTG-TCTCTGCA 876
Query 742 TACAAGA-CA-GTG-GTTCAACAGG-G-TTTGATCTCTGGTTTCGGCCTTGGTACAATGT 796
|| ||| || | | ||| | ||| | || | || || || || |||||||| | |
Sbjct 877 TA-TAGAGCAGGGGTGTTTGA-AGGAGCTTCCA-CT-GGGCTT-GGACTTGGTAC-A-CT 929
Query 797 TAGC--CGTGATCTTTTGCAGC-TACGGTTTAGCGGTTTGGTATGGTGCAAAGCTGATAA 853
| | || |||||||||| | || | |||||||||||||||||||| ||| |||||
Sbjct 930 CAACATAGTCATCTTTTGCA-CTTATGCTTTAGCGGTTTGGTATGGTGGGAAGATGATAT 988
Query 854 TGGAGAAAGGTTACA-ATGGCGGACAAG-TCATCAAT-GTGATTTTTGCAGTCTTGACCG 910
|||||||||| |||| | || ||||||| || || || | || || || || || ||||
Sbjct 989 TGGAGAAAGGATACACA-GGAGGACAAGTTC-TC-ATCATCATCTTCGCGGTTTTAACCG 1045
Query 911 GAGGAATGTCGTTAGGGCAAACATCGCCAAGTTTGAA-TGC-TTTCGCTGCTGG-AAGAG 967
| ||||||||||| ||| |||| ||| |||| || || ||| || || || | ||
Sbjct 1046 GTTCCATGTCGTTAGGACAAGCATCTCCATGTTT-AAGCGCGTTT-GCAGCAGGTCA-AG 1102
Query 968 CTGCCGCTTTCAAAATGTTCGAAACGATCAAGAG-GAGTCCAAAGATTGATGCTTACGAT 1026
| || || | ||||||||| ||||| ||||| || || || |||||||||||| ||||
Sbjct 1103 CCGCGGCATACAAAATGTTTGAAACAATCAAAAGAAAG-CCGGAGATTGATGCTTCCGAT 1161
Query 1027 ATGAGC-GGTTCTGTTCTTGAGGATATTAGAGGAGACATTGAGCTTAAAGATGTTTACTT 1085
| | | || |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1162 A-CAACTGGAAAAGTTCTTGATGATATTAGAGGAGACATTGAGCTTAAAGATGTCAACTT 1220
Query 1086 TAGGTATCCGGCTAGGCCTGATGTTCAAATCTTT-GCTGGATTCTCACTCTTTGTAC-CA 1143
||| || ||||| || || || | || |||||| || || || || |||| | | | |
Sbjct 1221 TAGTTACCCGGCAAGACCAGAAGAGCAGATCTTTCGCGGGTTT-TCGCTCTCTAT-CTCG 1278
Query 1144 AATGG--CAAGACGGTGGCTTTGGT-GGGACAGAGCGGAAGCGGAAAATCGACGGTTATC 1200
| ||| ||| || ||||| | || ||| ||||||||||| ||||| || || || |
Sbjct 1279 AGTGGTTCAAC-CG-TGGCTCTAGTTGGG-CAGAGCGGAAGTGGAAAGTCTACTGTCGTG 1335
Query 1201 AGTCTAATCGAAAGGTTCTATGATCCGGA--GTCAGGACAAGTATTGA-TAGACAACATT 1257
||||| || || ||||| |||||||| | | | || |||| || |||| |||
Sbjct 1336 AGTCTGATAGAGAGGTTTTATGATCCACAAAG-C-GGTGAAGTCC-GAATAGATGGGATT 1392
Query 1258 GATTTGAAGAAACTT-CAGCTCAAA-TGGATAAGAAGCAAAATCGGT-TTGGTTAGCCAA 1314
| | || | | || ||||| ||| ||||| |||||||| || || ||| | || |||
Sbjct 1393 AACCTCAA-AGAGTTTCAGCT-AAAGTGGATCAGAAGCAAGATAGGACTTG-TGAGTCAA 1449
Query 1315 GAACCTGTCTTGTTTGCGACCA-CGATAAAGGAGAACATTGCTTATGGGAAAGAAGACGC 1373
||||| || ||||| | | | | |||||||| ||||| || || ||||||||| | ||
Sbjct 1450 GAACCGGTTTTGTTCACTTCAAGC-ATAAAGGAAAACATCGCATACGGGAAAGAAAATGC 1508
Query 1374 GACTGATC-AAGAGATTCG-AACTGCGATTGAGCTCGCTAATGCGGCTAAATTCATTGAT 1431
|| ||| |||||||||| || || | |||||||| |||||| |||||||||||||
Sbjct 1509 AACA-ATCGAAGAGATTCGTAAG-GCTACAGAGCTCGCAAATGCGTCTAAATTCATTGAC 1566
Query 1432 AAACTCCCACAGGGTTTGGATACAATGGTAGGAGAGCACGGGACACAAATGTCTGGCGGG 1491
|| || || |||||||| || || ||||| ||||| ||||| || || | || || |||
Sbjct 1567 AAGCTTCCTCAGGGTTTAGACACGATGGTTGGAGAACACGGAACTCAGCTTTCGGGTGGG 1626
Query 1492 CAGAAACAGAG-ACTAGCAATCGCTAGGGCGATTTTGAAAAACCCTAA-AATATTGCTTT 1549
|| |||||||| | | || | ||||| || ||| ||||| | || || ||| |||||||
Sbjct 1627 CAAAAACAGAGGATT-GCGGTGGCTAGAGCTATTCTGAAAGATCC-AAGAATCTTGCTTT 1684
Query 1550 TAGATGAAGCAACAAGCGC-CTTAGACGCAGAATCCGA-ACGGATTGTTCAAGATGCGCT 1607
||||||||||||||||||| ||| || ||||| || || | ||||||||||||| || ||
Sbjct 1685 TAGATGAAGCAACAAGCGCACTT-GATGCAGAGTCTGAGA-GGATTGTTCAAGAAGCTCT 1742
Query 1608 CGTGA-ACT-TAATG-TCAAACCGGACTACCGTTGTGGTCGCTCACCGGTTGACCACAAT 1664
||| | | ||| |||| ||| || ||||| || ||||||||| | |||| ||| |
Sbjct 1743 --TGACAGGATCATGGTCAA-CCGAACAACCGTCGTTGTCGCTCACAGATTGAGCACGGT 1799
Query 1665 AAGAACTGCAGACGTAATCGCTGTTG-TCCACCAAGGAAAAATTGTCGAGAAAGGAACTC 1723
|||| ||||||| | || ||||| | | || ||||| || || || |||||||| |||
Sbjct 1800 GAGAAATGCAGACATGATTGCTGT-GATTCATCAAGGCAAGATCGTAGAGAAAGGTTCTC 1858
Query 1724 ACGATGAGATGATTCA-AGATCCCGAGGGAGCTTATTCACAGCTTGTTCGTCTTCAAGAA 1782
|| |||| | | | |||||| || ||||| ||||| ||||| | ||||| ||||||
Sbjct 1859 ACTCTGAGCTCCTA-AGAGATCCGGAAGGAGCGTATTCTCAGCTCATACGTCTACAAGAA 1917
Query 1783 GGAT-C-AAA-AGA-AGAAG 1798
| || | ||| ||| |||||
Sbjct 1918 G-ATACTAAACAGACAGAAG 1936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145341871287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5