BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18060.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946399 jgi|Araly1|946399|scaffold_702628.1 1748 0.0
> Ahg946399 jgi|Araly1|946399|scaffold_702628.1
Length=1097
Score = 1748 bits (946), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 2/1097 (0%)
Strand=Plus/Plus
Query 218 AATCAAGAGGAGAAGTGACAATGGATGCGTTTAGAAGACAAGCGAGTAAGCTTAGAGACC 277
||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct 1 AATCAAGAGTAGACGTAACAATGGATGCTTTTAGAAGACAAGCGAGCAAGCTTAGGGATC 60
Query 278 AAGTCGCAAAGCAGCAACTGGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCT 337
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AAGTCGCAAAGCAGCAACTGGCTGTGATAAAGCAATTCAGTGGGACTGGCTATGAAAGCT 120
Query 338 CAGATGTAATGGTGATTGATGAGCTTGAAATGCAAAGGCATCATCAACTCGATAAACTTT 397
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 CAGATGTAATGGTGATTGATGAGCTAGAAATGCAAAGGCATCATCAACTCGATAAACTTT 180
Query 398 ACCGCTCTACTCGTTCTGCAAAGGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCAT 457
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ACCGCTCTACTCGTTCTGCCAAGGAGTTCCAGAGAGATATTGTTAAAGCCGCTGAGGCAT 240
Query 458 TTACCACGATCGGGCTCAGACACATTGAAGCAGGAACCAAGTTGTCTGAAGACTGTTGTA 517
|||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 TTACTTCCATCGGTCTCAGACACATTGAAGCTGGAACCAAGTTGTCTGAAGACTGTTGTA 300
Query 518 GGTATGGGAACGAAAATAGTCAGAACATTGATGAGAATATACTGGCCAAGGCTGCAGCTA 577
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 301 GGTATGGGAACGAAAATAGTCAGAACATCGATGAGAACATTCTGGCCAAGGCTGCAGCTA 360
Query 578 TATACGGTGATGCACGGAAACATGTAGACAAAGAACAAGAAGACTTCAACAAGCTTTTGG 637
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATACGGTGATGCTCGGAAACATGTAGACAAAGAACAAGAAGACTTCAACAAGCTTTTGG 420
Query 638 CTTCTCAGGTTTTGGATCCTCTAAGAGCTATGGTTGCCGGTTCTCCTCTTGAAGATGCTC 697
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 421 CTTCTCAGGTTTTGGATCCTCTTAGAGCTATGGTTGCTGGTTCTCCTCTTGAAGATGCTC 480
Query 698 GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATGCAACGGAAG 757
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GCCATCTCGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATGCAACAGAAG 540
Query 758 TCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCAGAAAACGTAGCAAAGCTTC 817
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TCTCTAGACGACAAGCACGTGTAAGAGAAGCTCCGATTCCAGAAAACGTGGCAAAGCTTC 600
Query 818 AACTAGCGGAAGCAAAAATGCAAGAGCTAAAAGCAAATATGGCAGTCCTTGGTAAAGAAG 877
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 601 AACTAGCGGAAGCAAAAATGCAAGAGCTAAAAGCAAATATGGCGGTTCTCGGTAAAGAAG 660
Query 878 CAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTG 937
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAACTGCTGCATTGGCTGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTG 720
Query 938 TGGCTATGGTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACA 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGCTATGGTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACA 780
Query 998 TTGAAGCCGAGATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAA 1057
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 781 TTGAAGCGGAGATGGTAACCGAGAAACAACACAAAGAATCTGCACCTCCTGCGATCCCAA 840
Query 1058 CAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAAGTGATTCATC-CATTTTCC 1116
|||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||||||
Sbjct 841 CAGAGAACGGCTCAGAAAAAACATCATACTTTCTAGCTGAAGTGATTCA-CGCATTTTCT 899
Query 1117 GCTGCTTCAGAGAAAGAGTTAGACTTGGACAAAGGAGATTACATCGTTGTCCGAAAGGTG 1176
||||||||||||||||| ||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 900 GCTGCTTCAGAGAAAGAATTAGAGTTGGAAAAAGGAGATTACGTCGTTGTTCGAAAGGTG 959
Query 1177 AGCCAAACCGGTTGGGCTGAAGGAGAATGCAAAGGCAAAGCTGGTTGGTTTCCTATGGCT 1236
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGTCAAACCGGTTGGGCTGAAGGAGAATGCAAAGGCAAAGCTGGTTGGTTTCCTATGGCT 1019
Query 1237 TACATTGAGAAGCGACAGAGACTTCCCACTACCAACTTTGCTGCTGAAGTTTACTGAGTC 1296
||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 1020 TACATTGAGAAGCGACAGAGACTTCCCACAAACAACTTTTCTGCTGAAGTTTACTGAGTC 1079
Query 1297 TCTTCTTCAAAGATTTC 1313
|||||||||||||||||
Sbjct 1080 TCTTCTTCAAAGATTTC 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5