BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18070.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890395 jgi|Araly1|890395|Al_scaffold_0007_2381 909 0.0
> Ahg890395 jgi|Araly1|890395|Al_scaffold_0007_2381
Length=672
Score = 909 bits (492), Expect = 0.0
Identities = 599/648 (92%), Gaps = 17/648 (3%)
Strand=Plus/Plus
Query 356 ATGAACGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCtagtagcagca 415
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ATGAGCGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCTAGTAGCAGCA 94
Query 416 gtagtagtagcagcagcagcagcagcTCCAGCTCGGATGATGAGTCACGGGAAGTCAAGA 475
|||||||||| ||| | |||||||| ||||||||||||||||| |||||||||||||
Sbjct 95 GTAGTAGTAGTAGC-G--GCAGCAGC---AGCTCGGATGATGAGTCCCGGGAAGTCAAGA 148
Query 476 AGATAGATGATGATAAGAAGACTGGTGATGATGTTTCTGAAGTTATTACTGTGAGTTCTG 535
||||||||||| | ||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 149 AGATAGATGATAACAAGGAGATTGGTGATTCTGTTTCTGAAGTTATTACTGTGAGTTCTG 208
Query 536 TGCCAATTCAACCTGTGCCTATTGCTGCAGATGCTCCGTTTATGGGATT-TACTGCTAAT 594
||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||
Sbjct 209 TGCCAATTCAACCTGTGCCAATTGCTGGAGATGCTCCGTTTATGGG-TTGTACTGCTAAT 267
Query 595 GCGATTGTAGAGAATACTGGTTTGATGGATTCAGCTGTGCCGAATGATCCCGAA-TCTGG 653
||||||||||||||||| ||||||||||||||| ||||||| | ||||||| || |||||
Sbjct 268 GCGATTGTAGAGAATACCGGTTTGATGGATTCAACTGTGCCTAGTGATCCC-AACTCTGG 326
Query 654 AGAACTGGTTGAGATCTCGCATGTTGATACAATAGTCTCAAACGAGGCTGATGATAATTC 713
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 327 AGAACTGGTTGAGATCTCGCATGTTGATACAATAATCTCAAACGAGGCTGATGAGAATTC 386
Query 714 TTTGCCTAAAGCAACTGAGATTGCTGCTGAAGTTGCTCTTGCATTTGATGAGATTAGGCA 773
|||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct 387 TTTGCCTAAACCATCTGAGGTTGCCGCTGAAGTTGCTCTTGCATCTGATGAGATTAGGCA 446
Query 774 GACGTCTTCAGGTGCTACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACTTC---GCC 830
| ||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 447 GGCGTCTTCAGGTGCAACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACATCACCGCC 506
Query 831 TCTTCCAGAATCCAACGGTGTTCCTGAAGGCAACATAGAGTCT-AATGTTGTCATTTCTC 889
||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 507 TCTACCAGAATCCAACGGTGTTCCTGAAGGCAACAGAGAGTCTGAA-GTTGTCATTTCTC 565
Query 890 ATGAGGAAGAGGCTCCCAT-CTTGATACCAACACATGGAATTGCGAAAAGAACCTCATGG 948
||||||||||||||||| | || |||||||||||||||||||||| |||||||||| |||
Sbjct 566 ATGAGGAAGAGGCTCCCGTGCT-GATACCAACACATGGAATTGCGCAAAGAACCTCGTGG 624
Query 949 TTTAGTTGCTGCGGCTTGTTTGATGTGGTCACAGGATCCAGTAGATAA 996
||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 625 TTTAGTTGCTGTGGCTTGTTTGATGTGGCCACAGGATCCAGTAGATAA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5