BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18080.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329722 jgi|Araly1|329722|fgenesh1_pm.C_scaffold_7001949 1014 0.0
> Ahg329722 jgi|Araly1|329722|fgenesh1_pm.C_scaffold_7001949
Length=726
Score = 1014 bits (549), Expect = 0.0
Identities = 671/730 (92%), Gaps = 8/730 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGGACTGAACAAGATTCAGGTGTGACTAAACGTAATTGTTTGGGGTATA-ATAG 59
|||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||| | |
Sbjct 1 ATGGAGTGGACTGAACAAGAATCAACTGTGACTAAACGTGATTGTTTCGGGTATAGACA- 59
Query 60 ACGGATGTATTTGATCGAGAATTTGACAGAACGACTTGAGGATCTGATGAAGAGGAGAAG 119
|||| |||||||||| ||||| ||||| |||||| ||||||||||||||||| ||||||
Sbjct 60 ACGGTTGTATTTGATTGAGAAACTGACAAAACGACATGAGGATCTGATGAAGATGAGAAG 119
Query 120 GAAAGCTGTTAGATTTGGAGTGGAGCTTTCGTTTCTTGTGGCGGAATTTATGTTTTTGAT 179
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAAAGCTGTTAGATTTGGAATGGAGCTTTCGTTTCTTGTGGCGGAATTTATGTTTTTGAT 179
Query 180 ACCTATTGAGATTCTTGCTGGTGAAACTGGAGAGTACAGTCTGTGTACAAAGCTATTAGG 239
||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||| ||
Sbjct 180 ACCTAATGAGATTCTTGCTGGTGAAACTGGAGATTACAGTATCTGTACAAAGCTATTTGG 239
Query 240 GGTCAATGAAGACGATACGGGTACAAGTGTAGTCATAGGAAAGCTCGAGGAAGTCTTTGG 299
||| |||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 240 GGTTAATGAAGATGATAAGGGTACAAGTGTAATCATAGGAAAGCTCGAGGCAGTCTTTGA 299
Query 300 AGTAGTGATCTGGAAGAAGGAGAA-CAAGGAACATAATGTGGACCTTCCTGAATCTATTT 358
| ||||||| |||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 300 AATAGTGATTTGGAAGAAGG-TAAGCAAGGAACATGATGTGGACCTTCCTGAATCTATTT 358
Query 359 TTCGGTATGATGATTTCATTCGTCTTTGTGCAGATGCAACT-AGAGCCTTGGGAAAGATT 417
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 359 TTCGGTATGATGATTTCATTCGTCTTTGCGCAGATGCAACTCA-AGCCTTGGGAAAGATT 417
Query 418 GTTTTGGCTCTGGAAA-AGAGACAGTGTGAAAGACTCAAGCTTTCTGATTTAGATTCTCT 476
|||| || ||| |||| || ||| |||||||||||||||||||||||||| |||| |||
Sbjct 418 GTTTGGGATCT-GAAAGGGAAACACTGTGAAAGACTCAAGCTTTCTGATTTGGATTTTCT 476
Query 477 GTTTGAAGATTGCCAAAAAGTGTTGATGAAGATAGAGCTGAAGCTAGCAGAGATGAAGCA 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 GTTTGAAGATTGCCAAAAAGTGTTGATGAAGATAGAACTGAAGCTAGCAGAGATGAAGCA 536
Query 537 ACAGGTTTACAGATCGGTTTCCACGGATTATGAGTCGTTTTCGAAGTCAGAAAGGTTTGA 596
| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 537 ATGGGTTTACAGATCGGTTTCTGCGGATTATGAGTCGTTTTCGAAGTCAGAAAGGTCTGA 596
Query 597 TAGTTTGCTAAGAATAAAGCTCATGAATAGGGTCATTGCTGATAACAGATTTGGGAGATC 656
|||||| || ||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct 597 TAGTTTTCTCAGAATAAAGCTCATGAAGAGGGTCATAGCTGATAACAGATATGGGAGATC 656
Query 657 AGTGATTGGATCTTACTTACTAGAGATATGGCAGTCTCTGTTTCAAGCAGAGGCATTACA 716
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGTGATTGGATCTTACTTAGTAGAGATATGGCAGTCTCTGTTTCAAGCAGAGGCATTACA 716
Query 717 GGAGCTGTGA 726
||||||||||
Sbjct 717 GGAGCTGTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5