BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18100.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493058 jgi|Araly1|493058|fgenesh2_kg.7__2491__AT4G18100.1 1079 0.0
Ahg356357 jgi|Araly1|356357|fgenesh1_pg.C_scaffold_8000144 507 6e-143
> Ahg493058 jgi|Araly1|493058|fgenesh2_kg.7__2491__AT4G18100.1
Length=702
Score = 1079 bits (584), Expect = 0.0
Identities = 668/706 (95%), Gaps = 15/706 (2%)
Strand=Plus/Plus
Query 1 ATTTTAGGTTTGTTCAGCTGTTTTACGGAGTCGCTTTTGAGATATCGATCTTACGAAGAA 60
|||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 ATTTTAGGTTTGTTGTGCTGTTTTACGGAGTCGCTTTTGAG--A--GATCTTACGAAGAA 56
Query 61 GCAAATATGGCGGTCCCATTGCTTACCAAGAAGGTTGTGAAGAAGAGGTCTGCTAAGTTC 120
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 57 GCAAAAATGGCGGTCCCGTTGCTTACCAAGAAGGTCGTGAAGAAGAGGTCTGCTAAGTTC 116
Query 121 ATCAGACCCCAGAGTGACCGTAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGT 180
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 117 ATCAGACCCCAGAGTGACCGCAGAATCACCGTTAAGGAAAGCTGGAGGAGGCCAAAGGGT 176
Query 181 ATTGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATTGATTCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTAC 236
Query 241 GGATCTGACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGATCTGACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCAC 296
Query 301 AACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 AACACAAGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCAGAGATTGCT 356
Query 361 CACAACGTCTCCACTAAGAAGAGAAAGGCAATTGTTGAGAGAGCTTCTCAGCTAGACGTT 420
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 357 CACAACGTCTCCACTAAGAAGAGGAAGTCAATTGTTGAGAGAGCTTCTCAGCTAGACATT 416
Query 421 GTTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAAGAAGAATCTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 417 GTTGTTACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGTGAAGAAGAAACAAG 476
Query 481 CCTACTACTT-AG-T-T---GTT-T--CTTCTGTTTTGTTGCA-TTT-CCTTTTTGTTAT 529
| |||||||| || | | ||| | |||||||||||||||| ||| ||||||||||||
Sbjct 477 CTTACTACTTGAGATATTTAGTTGTTTCTTCTGTTTTGTTGCAATTTTCCTTTTTGTTAT 536
Query 530 AAGACGATTTTTGATTACTGCTGTGTTTGTGTTTGGAGTGAACAAACATGAGTTTTGGTT 589
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGACGATTTTTGATTACTGCTTTGTTTGTGTTTGGAGTGAACAAACATGAGTTTTGGTT 596
Query 590 TTAGTATGAAACAGATCAAGTTAAGACCTTTTGTTAAAGCTATTTCGGATTCATTACTTG 649
|| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 597 TTTGTATGAAACAGATCAAGTTAAGACCTTTTGTTAAAACTATTTCTGATTCATTACTTG 656
Query 650 TCAAAGGTTGAGCCTATTTCATCTAGAATTTAATAATTTGTCAGAG 695
|||||| |||||||| ||||||||||||||| ||||||| ||||||
Sbjct 657 TCAAAGATTGAGCCTTTTTCATCTAGAATTTGATAATTTATCAGAG 702
> Ahg356357 jgi|Araly1|356357|fgenesh1_pg.C_scaffold_8000144
Length=402
Score = 507 bits (274), Expect = 6e-143
Identities = 358/400 (90%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 67 ATGGCGGTCCCATTGCTTACCAAGAAGGTTGTGAAGAAGAGGTCTGCTAAGTTCATCAGA 126
|||||||| || |||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 1 ATGGCGGTTCCGTTGCTTACGAAGAAGGTCGTGAAGAAGAGGTCTGCCAAATTCATCAGA 60
Query 127 CCCCAGAGTGACCGTAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGAT 186
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CCCCAGAGTGATCGCAGAATCACCGTCAAGGAAAGCTGGAGGAGGCCTAAGGGTATTGAC 120
Query 187 TCAAGGGTGAGAAGAAAGTTCAAAGGTGTGACTTTGATGCCCAATGTTGGTTACGGATCT 246
|| ||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||
Sbjct 121 TCCCGGGTGAGAAGAAAGTTCAAGGGTGTCACCTTGATGCCCAATATTGGTTACGGATCT 180
Query 247 GACAAGAAGACTCGTCACTATCTTCCCAATGGATTCAAGAAATTCGTTGTTCACAACACA 306
||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 181 GACAAGAAGACCCGCCACTACCTCCCCAATGGATTCAAGAAGTTCGTTGTTCACAACACC 240
Query 307 AGTGAGCTCGAGTTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCTCACAAC 366
|||||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TCTGAGCTCGAGCTACTCATGATGCACAACAGGACTTACTGTGCAGAGATTGCTCACAAT 300
Query 367 GTCTCCACTAAGAAGAGAAAGGCAATTGTTGAGAGAGCTTCTCAGCTAGACGTTGTTGTT 426
||||| || |||||||||||||| || || ||||||||||||||||||||| ||||||||
Sbjct 301 GTCTCAACAAAGAAGAGAAAGGCCATAGTGGAGAGAGCTTCTCAGCTAGACATTGTTGTT 360
Query 427 ACCAACAGGCTTGCTAGGCTCCGTAGCCAAGAAGACGAGT 466
| |||| |||||||||| | |||||||| ||||||||||
Sbjct 361 TCGAACAAGCTTGCTAGGTTGCGTAGCCAGGAAGACGAGT 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5