BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18110.1
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946395 jgi|Araly1|946395|scaffold_702624.1 826 0.0
> Ahg946395 jgi|Araly1|946395|scaffold_702624.1
Length=710
Score = 826 bits (447), Expect = 0.0
Identities = 588/654 (90%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGGCACATCAACATGGATTCTAAACTATGAATCTAAGACTCACATCGTCGATCAC 60
||||||||||| || ||||||||||||||||||||||||| ||| |||||||| ||| ||
Sbjct 22 ATGGAGGGCACTTCGACATGGATTCTAAACTATGAATCTACGACGCACATCGTTGATTAC 81
Query 61 AAAAATTCAGGATCCTTCTCAATAAGTATCCAAGGAATTGAGCGGATTCTTATCCGGAGT 120
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 82 AAAAATTCAGGATCCTTCTCAATAAATATCCAAGGATTTGAGCGGATTCTTATCCGGAGT 141
Query 121 CCTAGCGGTCGTGAAACTTTGGCTCAACAAAAATCGCTAGGAAAGAAGAATGCAACAGTA 180
|||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 142 CCTAGCGGTCGTGAAACTTTGGCTCAACAAAAATATCTTGGAGAGAAGAATGCAACAGTA 201
Query 181 AGAATCGCATCCGAGATCCCACCTGT-TTTCCTCACCGGAGAAGAAATATGCAGTATATT 239
| ||||| |||||||||||||||| | ||||||||| |||||||||||||| |||| ||
Sbjct 202 ACAATCGAATCCGAGATCCCACCT-TCTTTCCTCACTGGAGAAGAAATATGTAGTAGATA 260
Query 240 TGTGGCTAACGTGTTGTCCAAGTCAAAGATCAACAAGTGGATTCAGCAAAGTA-TTGTTC 298
|||||||||||||||||||||| ||| |||||||| |||||||||||||| | ||||||
Sbjct 261 TGTGGCTAACGTGTTGTCCAAGGAAAATATCAACAACTGGATTCAGCAAAG-AGTTGTTC 319
Query 299 CTAAAATCTGCGAAGACCTGATTGATATAAGACGCCACCTTGAAGAAGAAGAAAAAGATG 358
||||||||||||||||| ||||| ||||||| |||| |||||||||||||||| |||| |
Sbjct 320 CTAAAATCTGCGAAGACGTGATTAATATAAGTCGCCGCCTTGAAGAAGAAGAAGAAGAAG 379
Query 359 GTTTCTTGGTTGAAG-T----T-GAAGTTGTTCTAGAAACGTTGTATAGTGATTGGTTAA 412
||||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||
Sbjct 380 GTTTCTTGGTTGAAGCTGAAGTTGAAGTTGTTCTAGAAACATTGTATACTGATTGGTTAA 439
Query 413 GAGTCAATGATTATGACTCTCAAGGTTGT-CTAATACCAATAGAAGAAGAGTGCATAATA 471
| |||||||||| |||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 440 GCTTCAATGATTACGACTCTCAAGGT-GTTCTAATACCAACAGAAGAAGAGTGCATAATA 498
Query 472 TGTCTAGAAGAGTTAGCATCATCAGGTAGTGAGAGGAGGATCATGAAGTTGCTTTGTTCT 531
||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 499 TGTCTAGAAGAGTTATCATCATCAAGTGGTGAGAGGAGGATCATGAATTTGCTTTGTTCC 558
Query 532 CACAGTTTTCATAAAGATTGTATTCTCCCCTGGCTACG-CTGCAAGCGATCATGTCCTAC 590
|||||||||||||| |||||| ||||||| ||||| || | ||||||| |||||||| ||
Sbjct 559 CACAGTTTTCATAAGGATTGTCTTCTCCCGTGGCTGCGAC-GCAAGCGTTCATGTCCAAC 617
Query 591 TTGTCGTGACGACATCCACAATCGTCGAGC-AGAA-GAAGACCACCATGAATGA 642
|| |||||||||| ||||||||| |||| | |||| ||||||||||| ||||||
Sbjct 618 TTTTCGTGACGACGTCCACAATCCTCGA-CTAGAAAGAAGACCACCAGGAATGA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23521839789
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5