BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18120.1
Length=2724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493056 jgi|Araly1|493056|fgenesh2_kg.7__2489__AT4G18120.1 2414 0.0
> Ahg493056 jgi|Araly1|493056|fgenesh2_kg.7__2489__AT4G18120.1
Length=2726
Score = 2414 bits (1307), Expect = 0.0
Identities = 1721/1908 (90%), Gaps = 80/1908 (4%)
Strand=Plus/Plus
Query 818 CAAGCTGCTTAAAAAGAGGAAACTTGACATACATTTCTCAATCCCCAAGGATAATCCATC 877
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 860 CAAGCTAATTAAACGGAGGAAACTGGACATACATTTCTCAATCCCCAAGGATAATCCATC 919
Query 878 AGAGAAAGATGTTAACCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 937
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TGATAAAGATGTTAATCAAGGAACTCTTGTGGTTTTCAACTTGGCTCCATCAGTTTCCAA 979
Query 938 CAGAGACCTTGAAAATATATTCGGTGTTTATGGCGAGATCAAGGAGATACGGGAAACACC 997
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 980 CAGAGACCTTGAAAATATATTCGGTGCTTATGGCGAGATCAAGGAGGTACGGGAAACACC 1039
Query 998 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AAATAAGAGGCATCACAAATTTGTTGAATTTTTTGACGTTAGATCAGCTGATGCAGCTCT 1099
Query 1058 CAAAGCTTTGAACAGGACAGAAATTGCTGGAAAACGTATCAAGCTGGAACATAGTCGTCC 1117
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1100 CAAAGCTTTGAACAGGACTGACATTGCTGGAAAACGTATCAAGCTTGAACATAGTCGTCC 1159
Query 1118 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAACAAGATGATTC 1177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1160 TGGTGGTGCTCGTCGAAACATGATGTTGCAAATGAATCCGGAATTGGAGCAAGATGATTC 1219
Query 1178 CTACAGCTACCTGAATCATGTCGAGTCGCCTTTGGCAAGCTCTCCAATAGGAAAC---TG 1234
| ||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||| ||
Sbjct 1220 CCACAGCTACCCGAATCATGTTGAGTCGCCTTTAGCAAGCTCTCCTCTAGGGAACAAGTG 1279
Query 1235 GCGTAATAGTCCTATTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1294
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GTATAATAGTCCTGTTGATCATCCTCTACAAAGTTTCAGTAAGTCTCCAATATTTGGAAA 1339
Query 1295 CTTGAGTCCAACAAAGAACATCCGTTATCCAGAATTTTCG--A-TGAAG-A--CT---G- 1344
||||||||||||||||||||||| |||||||||||||||| | | | | | || |
Sbjct 1340 CTTGAGTCCAACAAAGAACATCCATTATCCAGAATTTTCGTCAATTATGCATTCTCAAGA 1399
Query 1345 --CA--TCGG-TGAA--CA--AT-G---ACCAA-GA--AGGAAG-AAG--G-TTTAGCCA 1384
|| || | | || | || | | ||| || | |||| ||| | ||||||||
Sbjct 1400 AGCAAATCCGATAAAGGCTGCATCGGTGAACAATGACCAAGAAGGAAGATGGTTTAGCCA 1459
Query 1385 CTTGGATCACCTGTTTTCAAGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1444
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 CTTGGATCACCTGTTTTCACGTAGCAGCTATAATAATGCAAGCCACAAAGCTTCTACCTT 1519
Query 1445 TCAGCAACCGCAGTCGTTTGGATCTGTCTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1504
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1520 TCAGCAACCACAGTCCTTTGGATCTGTTTCTTCATTTGGTTCTTTGAACTCACACCCGAG 1579
Query 1505 TCATGTAGAAACATTATCTGGATCAGAATTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1564
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1580 TCACGTAGAAACATTATCTGGATCAGAGTTCCTGTGGGGAAGCCCTAGTTCTTCAGCCTG 1639
Query 1565 GCCTGTGAATCCATTCTCTTCAAACAG-AGAAAATCACAGGTTTCCGTACTCAGCTCAGA 1623
||||||||||||||||||||||||| | | ||||| |||||||| | |||||||||||||
Sbjct 1640 GCCTGTGAATCCATTCTCTTCAAAC-GTAAAAAATAACAGGTTTTCTTACTCAGCTCAGA 1698
Query 1624 ACGGATCCCTCCACCAGCTTCATCATATCGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1683
|||| || ||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 1699 ACGGGTCGCTCCACCAGCTCCATCATGTTGGATCTGCGCCATCTGGATTCTTCCCGAGGT 1758
Query 1684 CCCCTGAAACTTCATCAATGGGTTCAGTGGCTTTCCGAGGAGCAAGTGGTAATATGAATG 1743
||||||||||||||||||||| | | || |||||||||||||||| ||||||||
Sbjct 1759 CCCCTGAAACTTCATCAATGG---C--T---TT-CCGAGGAGCAAGTGGTCATATGAATT 1809
Query 1744 CTCAAAGGAACTTGCGTGAAACTAGCTCTCCAA-ATTTTAAAATGTTGTCTGCTCCAAGA 1802
||||||| ||||| ||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1810 CTCAAAGAAACTTACGTGAAACTAGCTCTCCAAGATTT-AAAATGTTGTCTTCTCCAAGA 1868
Query 1803 CGTAGTCAATTGTTTACAGGCAATGGCTCTTACCTCTGGCCTGCTGCTACAATGGTTTCC 1862
| ||||||||||||||| |||||||||||||||| || |||| | ||||||||| ||||
Sbjct 1869 CTTAGTCAATTGTTTACGGGCAATGGCTCTTACCACTTACCTGTTCCTACAATGGCTTCC 1928
Query 1863 ATTGACGACCCATTGGAGGATGGAAGCAACCAACAGTTTGATAGTAACGGTAACCAAGCC 1922
||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| |
Sbjct 1929 ATTGACGACCCATTGGAGGTTGGAAGGAACCAACAGTTTGATAGTAACGTTAACCAAGTC 1988
Query 1923 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 1982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 GACATCAAGATACAGTTTCAGCTTGACTTGAGTAAGATTATGAGGGGTGAAGATCCACGG 2048
Query 1983 ACAACCTTGATGATAAAAAACATCCCAAATAAGTATACCCGGAATATGCTCTTAGCTGCC 2042
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2049 ACAACCTTGATGATAAAAAACATCCCTAATAAGTATACCCGGAATATGCTGTTAGCTGCC 2108
Query 2043 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTTTATTTGCCTATTGATTTCAAGAAT 2102
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2109 ATCGACGAGAAAAACAGTGGAACTTATGATTTTCTATATTTGCCTATTGATTTCAAGAAT 2168
Query 2103 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCACCATTGCATTG 2162
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2169 AAATGTAATGTGGGGTATGCATTTATCAATATGGTGTCTCCTAAATTCATCATTGCACTG 2228
Query 2163 TACGAGGCCTTTAATGGAAAGAAATGGGATAAGTTCAACAGCGAGAAAGTTGCTTCATTG 2222
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2229 TACGAGGCCTTTAATGGAAAAAAATGGGATAAGTTCAACAGCGAGAAAGTTGCTTCGTTG 2288
Query 2223 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCAAGTTTG 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2289 GCTTATGCACGAATCCAAGGTAAAGCTGCGCTTATTGCTCACTTTCAGAACTCGAGCTTG 2348
Query 2283 ATGAATGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2342
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 ATGAACGAAGATAGGAGATGCCAACCTATTGTCTTTGATGGATCAGAATCTAAATATCCG 2408
Query 2343 ATCATCCGGGAGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTCTTGTC 2402
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2409 ATCATCCGGGCGAATTCGCAGCTCGAGGCATCAAATTCAACGGTTTCTCATCCTGTAGTC 2468
Query 2403 GGCGAGAACACACATCAAAGCTGACAGTCAAGTGAATCACGTTATTGCCT-CTGGTTTAA 2461
||||| ||| |||||||||||||||| ||||||||| | ||||| ||| | |||||||
Sbjct 2469 AGCGAGGGCACGCATCAAAGCTGACAGTGAAGTGAATCCCATTATTTCCTTC-GGTTTAA 2527
Query 2462 AACGTAAATATCAGTTTCTAGGATGAGATGATGATGAACAACA-ACAAACTACTACATAG 2520
||||||||||||||||| ||||||||||||||||||| | | | ||| | | | | |
Sbjct 2528 AACGTAAATATCAGTTTTTAGGATGAGATGATGATGA-CTTTAGA-AAATTT-T-C-TGG 2582
Query 2521 TACCCTTTAGAAACATTTCTGGTTTTCTCAGTTCCTTCTAGTTTGCTGGTATCCAGAATT 2580
| || ||| | ||||||||| ||| | |||| | || ||| ||||
Sbjct 2583 TTTTCTC-AGAT-C-TTTCTGGTT------GTT--TG---GTTTCC-GGAATC-AGAA-- 2624
Query 2581 AGAAAGAATTATTGTTCTAGACATGTGAATTGATGGTTGTGTTTTACTTTTGTC-TGGTT 2639
|| | | || | | ||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct 2625 AGTATTA-TT-T-GATCTAGACATGTAAATTGATGGTTGTGTTTT--TTTTGTCCTGGTT 2679
Query 2640 GGCCAAATGATCTCTCCA-AATTGTATACATAGGATAGTTAAGATACA 2686
|||||||| ||||||||| ||| ||||||||||||||||| |||||||
Sbjct 2680 GGCCAAATCATCTCTCCACAAT-GTATACATAGGATAGTTTAGATACA 2726
Score = 1020 bits (552), Expect = 0.0
Identities = 719/797 (90%), Gaps = 22/797 (3%)
Strand=Plus/Plus
Query 9 CTTCTCCATCCAATTAAAGATTCTCTC-TTTTAATAATGCTTTCAAAAGAATATCTAATT 67
||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 1 CTTCTCCATCCAATTAAAGATTCTCTCTTTTTAATAATGCTTTCAAAAGAAT-TC--A-- 55
Query 68 TCAGGAATAATCAA--AAACT-TATTTAATTTCTCTCTTCTTTATCAATGTGTATATATA 124
| |||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct 56 -C--GAATAATCAATTTTTTTATATTTATTTTCTCTCTTCTTTATCAATGTGTATATAT- 111
Query 125 ATACACACATAT-ATA-AGAAAGTGTTTCTTCTGTATTCGTGGGAGA-AACAAACAAAAA 181
||| | | | | | | |||||| ||||||||||||||||||||||| || || | |
Sbjct 112 ATATATAGA-GTCAGAGAGAAAGCGTTTCTTCTGTATTCGTGGGAGAGGAC-AA-ATTAT 168
Query 182 ACAATTTC-TTCTAGCGAAGAAGCAGAATTAATCAAAGTTCAGAGCTTTCACTATGAATA 240
|| ||| || | |||||||||| || |||||| |||| ||| |||||| | |||||||
Sbjct 169 TGAAGTTCGTTGTTGCGAAGAAGCGGAGTTAATCGAAGTGCAGGGCTTTCGCAATGAATA 228
Query 241 TCCCAAGTGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TCCCAAATGGAACCTTCTCAAGATCTGATCATTTCCATGCTTCAAGTGATGCTTCTCTCT 288
Query 301 TTTCAAGCTCTCTTCCTCTTATTCAACACCAAAACATCAACCCTCGTGAC-AGCTACCAT 359
|||| || ||||| ||| || |||||||||||||| |||||||||| | | |||||||||
Sbjct 289 TTTCCAGTTCTCTACCTGTTCTTCAACACCAAAACCTCAACCCTCGCG-CGAGCTACCAT 347
Query 360 CAGTCTGTTGATGAAATGGCTTCTGGCTTAGACCATTTTAGTGGAGGCATTGGCAATATG 419
||||||||||||||||| ||||| |||||| | || | | |||||||||||||||||||
Sbjct 348 CAGTCTGTTGATGAAATTGCTTCCGGCTTAAATCAATACAATGGAGGCATTGGCAATATG 407
Query 420 CTTGATGATGGTGACTCACATCCAATCGGAAACATGCTTCCTGATGATGAGGAAGAGCTT 479
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 408 CTTGATGATGGTGAGTCACATCCAATCGGAAGCATGCTTCCCGATGATGAGGAAGAGCTT 467
Query 480 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCCTTGCCAGCTACGTTGGATGACTTG 539
||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct 468 TTCTCTGGTCTAATGGATGATTTAAACTTAAGTTCTTTGCCTGCTATGTTGGATGACTTG 527
Query 540 GAAGATTATGATTTATTCGGTAGCGGAGGAGGTCTTGAATTGGAGACTGATCCATATGAC 599
||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||
Sbjct 528 GAAGATTATGATTTATTTGGTAGCGGAGGAGGGCTTGAACTGGAGACTGACCCATATGAC 587
Query 600 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGTTATG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 588 AGTCTAAACAAGGGCTTCTCAAGAATGGGTTTTGCTGATTCTAACGTTGACAATGGTATG 647
Query 660 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCTCAAAACATTTTCCAAAATGGAGTGGGATCGATTGCTGGCGAACATCCTTATGGTGAA 707
Query 720 CATCCTTCAAGGACTTTGTTTGTTCGGAATATTAACAGTAACGTAGAGGATTCTGAATTG 779
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 708 CATCCTTCAAGGACTCTGTTTGTTCGGAATATTAACAGTAACGTTGAGGATTCTGAATTG 767
Query 780 CAAGCTCTTTTTGAGCA 796
|||||||||||||||||
Sbjct 768 CAAGCTCTTTTTGAGCA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102767481010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5