BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18140.1
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493053 jgi|Araly1|493053|fgenesh2_kg.7__2486__AT4G18140.1 1134 0.0
> Ahg493053 jgi|Araly1|493053|fgenesh2_kg.7__2486__AT4G18140.1
Length=1809
Score = 1134 bits (614), Expect = 0.0
Identities = 860/970 (89%), Gaps = 51/970 (5%)
Strand=Plus/Plus
Query 5 aaaaaaaCCAGAGAGGAGGAAGaaaaaaaaaaCtcttgcttcttcaggtaggtcttcttc 64
||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||
Sbjct 2 AAAAAAACCAGAGAGAAGGAAAAAAAAAAAAACTCTTGCTTCTTCAGGTTGG------TC 55
Query 65 ttcttcttccttAGCTCAATCTAATTCTTGTTGTTTTTCTGCAATTTTGATTGTTAATTA 124
||||||||||| ||||||||||| |||||| ||||||| ||||||| ||||| ||||| |
Sbjct 56 TTCTTCTTCCTGAGCTCAATCTAGTTCTTGGTGTTTTTATGCAATTGTGATTATTAATGA 115
Query 125 TCTGTGTTTAACGTTTCTTAGCAATTTTATTTTGGTTTTATCGGTTGACTTGTGTTTGAG 184
|| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 116 TCGGTATTTAACGTTTCTTAGCAATTTTATTTTGTTTTTATCGGTAGACTTGTGTTTGAG 175
Query 185 TTTGTGAAAATGATCAAAAATTCCTGTTACAGATCCGTATGTTTATCTTACTATATTCTG 244
||||||||||||||||||||||| | |||||||| || |||||||||||||| ||||||
Sbjct 176 TTTGTGAAAATGATCAAAAATTC-TACTACAGATCTGTTTGTTTATCTTACTAGATTCTG 234
Query 245 TAAT-TTCATCAACAAGCTGACTTTGTTTTGCAGTATCTGCTGCTGGTTTGATCTTGAGA 303
| | |||||||| |||||||||||||||||||| ||| | |||||||||
Sbjct 235 TCTTCTTCATCAAGAAGCTGACTTTGTTTTGCAGCATC-G-----------ATCTTGAGA 282
Query 304 CCATTTCTTTTGCAGCTTGTTGTTGTATTTCTAGAGACTATGCCAATGCCATTTTTGAAA 363
||||| ||||||||| | ||| | | |||||| | |||| ||||
Sbjct 283 CCATTCCTTTTGCAG-----------A---CTAT-GCCAATGCCA-T----TTTT-GAAA 321
Query 364 ATGAAGAGCAAGATAAGCAAGGACTCGTTAAGAGAGAAAAGAGTTCTTGGTGTTTGTAAG 423
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 322 ATGAAGAGCAAGATAAGCAAAGACTCGTTAAGAGAAAAAAGGGTTCTTGGTGTTTGTAAG 381
Query 424 AAA---CCTCATAAGGATGTTAAAAA-TTCATGCTTTGATCCCAAAATATCGGAGAGAAT 479
||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 382 AAATTACCTCATAAGGAT-TTAAAAAATTCATGCTTTGATTCCAAAATATCGGAGAGAAT 440
Query 480 GGAACTTTTGGTCACTGCTACTCAGAATTGCAACAACAACGAGGAACA-GAATATAGGTT 538
||||| ||||||||||||||||||||||||| ||||||| |||||||| || | ||||||
Sbjct 441 GGAACATTTGGTCACTGCTACTCAGAATTGCCACAACAATGAGGAACAAGATT-TAGGTT 499
Query 539 TGGATTCTTCTACTAGGGATGTTGTAACAAATGAACCCCAAGACCTGCTAGTTGAAGACA 598
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 500 TGGATTCTTCTACTAGGGATGTTGAAACAAATGAACCTGAAGACCTGCAAGTTGAAGACA 559
Query 599 GTTCCAAAAATGCGTCGAATATGGATACAATATTTTCACCTGTTCTTGATGATGAACTGT 658
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 560 CTTCCAATAATGCGTCGAATATGGATACAATATTTTCACCTGTTCTGGATGATGAACTGT 619
Query 659 ATTCTGAAACTGACCGAGTATTTGTGGAAGGGAACAATGTGCAATGGGAAATGCCTAGGT 718
|||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 620 ATTCAGAAACTGATCGAGTATTTGTGGCAGGAAACAATGTGCAATGGGAAATGCCTAGGT 679
Query 719 GGGGAGCTGATGACTGCAGCA--A-CAATCAGTTTTGCAACGATTCTGATTACTTTCTAT 775
||||||||||||| |||||| | |||||| | |||||||||||||||||||||||| |
Sbjct 680 GGGGAGCTGATGAGAGCAGCAGCAGCAATCAATCTTGCAACGATTCTGATTACTTTCTTT 739
Query 776 CTGATGTGCTGATTGCAAGCTTGCCATTCTATGAGAGTGGAAATGTTGATTTTTTCACTG 835
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 740 CTGATGTGCTGATTGCAAGCTTGCCATTTTATGAGACTGGAAATGTTGATTTTTTCACTG 799
Query 836 AGATAAGTCCCTTGCCTCATTGTATCTTTCCAGAGCCAAGTGTGTTACTAGATGCAGCTG 895
|||||||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||
Sbjct 800 AGATAAGTCCCTTGCCTCGTTGTATCTTTCCAGAGACAAGTGCGTTACTAGATGTAGCTG 859
Query 896 AGCAGTACATGTTATTACCTTACTTAGAAGATAGATCAGCCAGCAGTGATGATGTTAAGT 955
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 860 AGCAGTACATGCTATTACCTTACTTAGAAGATGGATCAGCCAGCAGTGATGATGTTAAGT 919
Query 956 CTGATGAGGA 965
||||||||||
Sbjct 920 CTGATGAGGA 929
Score = 1125 bits (609), Expect = 0.0
Identities = 780/856 (91%), Gaps = 38/856 (4%)
Strand=Plus/Plus
Query 980 GGTCAAGATCAAAAAACTTGGAAGCAGCAGA-GAATCACACTGAAGCTGAACAAACTGAA 1038
||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||||||||
Sbjct 977 GGTCAAGATCACAAAACTTGGAAGCTGCAGATG-CTCACGCTGAAGCTGAACAAACTGAA 1035
Query 1039 GATTTTGATCCACAGATTTTCTTAAGAAATCAACCAGAATTAGCTGATGTGGTATTCAAT 1098
||||||||||| ||| ||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1036 GATTTTGATCCTCAGCTTTTCTTAAGAAATCAACCGGAATTATCTGATGTCGTATTCAAT 1095
Query 1099 TATTTCCCGGATATGCAGCAGCCTAGGGACTCTCCGAAAAGGAAGGCGGTAACCCTTGTT 1158
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1096 TATTTCCCTGATATGCAGCAGCCTAGGGAATCCCCGAAAAGGAAGGCGGTAACCCTTGTT 1155
Query 1159 CTTGA-TT---TG-G--A-T---GAAACTCTGGTCCATTCGACTCTGGAAGTCTGTAGAG 1207
|| || || || | | | ||||||||||||||||||||||||| || ||| ||||
Sbjct 1156 CTCGATTTGGATGTGACATTGCAGAAACTCTGGTCCATTCGACTCTGGGAGCCTGCAGAG 1215
Query 1208 ATACAGACTTTTCCTTCAGAGTCACTTTCAATATGCAAGAGAACACTGTTTACGTGAAAC 1267
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1216 ATACAGACTTTTCCTTCAGAGTGTCTTTCAATATGCAAGAGAACACTGTTTACGTGAAAC 1275
Query 1268 AAAGACCATACCTTTATAGGTTCTTAGAGAGGGTGGTTGAACTTTTTCATGTTGTCATCT 1327
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1276 AAAGGCCACACCTTTATAGGTTCTTAGAGAGGGTGGTTCAACTTTTTCATGTTGTCATCT 1335
Query 1328 TCACGGCTAGTCACAGC-ATCTATGCGTCTCAGCTTCTAGATATATTGGATCCAGATGGG 1386
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1336 TCACGGCTAGTCACAGCAAT-TATGCGTCTCAACTTCTAGATATATTGGATCCAGATGGG 1394
Query 1387 AAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGTATTTATACC 1446
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1395 AAGTTTGTATCGCAACGTTTTTACCGGGATTCATGCATTCTTTCAGATGGGATTTACACC 1454
Query 1447 AAGGATTTAACCGTTTTGGGTCTTGATCTAGCAAAAGTGGCTATAGTTGACAACTGTCCA 1506
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1455 AAGGATTTAACTGTTTTGGGTCTTGATCTAGCAAAAATGGCTATAATTGACAACTGTCCA 1514
Query 1507 CAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATTAAAAGTTGGTATGATGATCCA 1566
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1515 CAGGTGTACAGATTGCAAATAAACAATGGGATCCCTATCAAAAGTTGGTACGATGATCCA 1574
Query 1567 ACTGATGATGGTCTGATTACATTACTTCCCTTCTTAGAGACATTGGCTGATGCCAACGAT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 ACTGATGATGGTCTGATTACATTACTTCCCTTCTTAGAGACATTGGCTGATGCCAACGAT 1634
Query 1627 GTTCGTCCTGTCATTGCCAAGAGATTCGATCATTC-AACAAGAAGTTCTTTTGATTAGGC 1685
|||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1635 GTTCGTCCTGTCATCGCCAAGAGATTCGATCATTGGAACAACAAGTTATTTTGATTAGGC 1694
Query 1686 GTAAGGAAGTGACCTGACTATTGTTCTTCTCTGTGTTAACTTGACTCTTAAGGTTTTGTC 1745
||||||||||||||||||| ||||||| |||||||||||| | | | |
Sbjct 1695 GTAAGGAAGTGACCTGACT-TTGTTCTGCTCTGTGTTAAC---A-T-----G-T------ 1737
Query 1746 TAAGGTCTTAAGCTCCCTGACAAACTTGCCAATATGTACATCTTTACAATGTT-AACTTG 1804
| ||||||||||||||||||||||||||||||||| |||| || |||||| ||||||
Sbjct 1738 -A---TCTTAAGCTCCCTGACAAACTTGCCAATATGTAAATCTATAGAATGTTTAACTTG 1793
Query 1805 TTTTCATTAACATTTG 1820
|||||||||| |||||
Sbjct 1794 TTTTCATTAAAATTTG 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68562441000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5