BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18150.1
Length=2518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890387 jgi|Araly1|890387|Al_scaffold_0007_2373 1698 0.0
> Ahg890387 jgi|Araly1|890387|Al_scaffold_0007_2373
Length=2409
Score = 1698 bits (919), Expect = 0.0
Identities = 1210/1346 (90%), Gaps = 37/1346 (3%)
Strand=Plus/Plus
Query 4 GGTGGTGGTGGCGGCAGCGTTAGTAACGCGAATGGAGGTGTTCCGGCGTCTTCGAGGAAG 63
||| |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 7 GGTCGTGGCGGCGGCGGCGTTAGTAACGCGAACGGGGGTGTTCCGGCGTCTTCGAGGAAG 66
Query 64 GTTATTCAGGATTTGAAGGAGATTGTGGAGTGTTCTGAGTTAGAGATTTATGCGATGCTT 123
||| |||||| |||||||||||| ||| | ||||||||||||||||| ||||||||||||
Sbjct 67 GTTGTTCAGGGTTTGAAGGAGATCGTGAACTGTTCTGAGTTAGAGATCTATGCGATGCTT 126
Query 124 GTTGAGTGCGATATGAATCCTGATGAAGCTGTTAATCGTCTTCTCTCTCAAGATACTTTT 183
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 127 GTTGAGTGCGATATGGATCCTGATGAAGCTGTTAATCGTCTCCTTTCTCAAGATACTTTT 186
Query 184 CATGAGGTGAAGAGTAAACGAGAGAAAAAGAAAGAGACTAAAGACCATGCAGACTCCTGG 243
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 187 CATGAGGTGAAGAGCAAACGAGAGAAGAAGAAAGAGACTAAAGACCCTGCAGACTCCTGG 246
Query 244 ACGCGTAATGTCCCGAATCGTGGAGCTAGAAGCGGTAATGACAGTTACAATACCTCTCGA 303
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 247 ACGCGTAACGTCCCGAATCGTGGAGCTAGAAGCGGTAATGACAGTTACAACACATCTCGA 306
Query 304 GGTGGCAGAAACAAGTATAAATCTAATGAGACAGGAAAAATTCA--A-GGTGTACCTGTG 360
|||||| ||||||||||||| ||||||||||| || || |||| | ||||||||||
Sbjct 307 GGTGGCGGAAACAAGTATAATTCTAATGAGACGGGGAATGTTCATCATGGTGTACCTGCA 366
Query 361 AATAGAAGAGAAAACGGAGCACGTAATCATTTGGCTGGATCTTCTGCATCATCTGGTTTG 420
|| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||
Sbjct 367 AACAGAAGAGAAAACGGAGCACGTAATCATTGGGCAGGATCTTCTGTATCATCTGG--TG 424
Query 421 CTTGGACGCCTACCTGGTTTGCTTAGACGCCAACCACCATCAAACAGTGATCTTCCAAGC 480
| | | ||| |||||||||| |||||||||||||||| |||||||
Sbjct 425 --T----G-----C----TTG----GACGCCAACCTCCATCAAACAGTGATCCTCCAAGC 465
Query 481 TCTAAAGTCAAGAAAGCACCAACGA-CCCCCAGTGATGCAGTTACTTTGTCTTCGTTGCC 539
||| ||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||
Sbjct 466 TCTGAAGTCAAGAAAGCACCAAC-AGGCCCGAGTGATGCAGTTACTTCGTCTTCGCTGCC 524
Query 540 TTTTCCTGCGTATCAATCAGCTTGGGCTAGCGCTAACCCTGGGCAAAGAACTATGGCTGA 599
|| ||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 525 TTCTCCTGCGTATCAATCCGCTTGGGCCAGTGCTAACCCCGGACAAAGAACTATGGCTGA 584
Query 600 AATTGTGAAAATGGGTAGACCTAACCTGCAGAAGAATGTCGCTTTGCCTCGTTCATCAGA 659
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 585 GATTGTGAAAATGGGTAGGCCTAACCAGCAGAAGAATGTTGCTTTGCCTCGTTCATCAGA 644
Query 660 GGCTCAAGAGAGCAGCAGTAAAGCCCCTTTGAAGGATGAATGCCCTTCAATTGAGAAGCA 719
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 645 GGCTCAAGAGAGCGGAAGTAAAGCCCCTTTGAAGGATGAATGGCCTTCAATTGAGAAGCA 704
Query 720 AGACGTTTCTTATCTATCATCCTCTGTCTTGAAACCATCTGCTGAATCTAAGATTTCTTC 779
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 705 AGATGTTTCTTATCCATCATCCTCTGTCTTGAAACCATCTGCTGAATCTAAGATTTCTGC 764
Query 780 CGACCAATTTAGTGAGTCTCAACATTTGGATGAGACTCTTTTGGATGAC-ATCCACCGCG 838
||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||| ||
Sbjct 765 CGACCAATTTAGTGAGTCTCAACATCTGGATGAGACTCATTTGGATGACCA-CCACCACG 823
Query 839 AAACAAAAACTTATCCAACTGGGTCTCCTCCTGATGTGGATCACAATCCGC-TAGCTTCA 897
|||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 824 AAACAAAAACATATCCAATTGGGTCTCCTCCTGATGTGGATCACAATCCGCCT-GCTTCA 882
Query 898 GTATCAAGCAGAAATTTGGTTGACGATGAATCTAGAGATTCCTTAGTATGTGACGATGAA 957
||||||||||||||||||||||||||||| || |||||||||| ||| | ||||||||||
Sbjct 883 GTATCAAGCAGAAATTTGGTTGACGATGATTCAAGAGATTCCTCAGTGTATGACGATGAA 942
Query 958 AATAACAAAGCTGAAAGACATTCTTATGAGGAAAATCAAGATGAAGATGTTTCTACTTCT 1017
|||||||||||||| ||| ||||||||||||||||| || ||||||||||||| | |||
Sbjct 943 AATAACAAAGCTGAGAGATATTCTTATGAGGAAAATGGAGCTGAAGATGTTTCTGCATCT 1002
Query 1018 GTTGCTACTGGTTTTCAGCAACTAACTATTTACAATGAAGAAGAGCAGGAAGCATTACCA 1077
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1003 GTTGCTACCGGTTTTCAGCAACTTACTATTGACAATGAAGAAGAGCAGGAAGCATTACCG 1062
Query 1078 A-AGGAAGAAAAACATGCGGTGATAATCCCCAATCACCTGCAAGTCCATACCTCGGAATG 1136
| || | || |||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1063 AGAG-ATGACAAACCTGCAGTGATAATTCCCAATCACCTGCAAGTCCATACCTCGGAATG 1121
Query 1137 CTTGCACTTAATGTTCGGTTGTTTTTCTTCTGGGATAGGATCTGGTCAA-CCTAGTGCCT 1195
|| |||| ||||||||||| ||||| ||| |||||||||||||||||| || |||| ||
Sbjct 1122 CTCGCACCTAATGTTCGGTAGTTTTGGTTCCGGGATAGGATCTGGTCAAACC-AGTGGCT 1180
Query 1196 TGAATGATAACTTGGAAGAACCACTAGTAGCAGAGGATGATTCATCATTCAGACATCCCG 1255
|||||||||| ||||| ||| |||||| |||| |||||||||| ||||||||||||||||
Sbjct 1181 TGAATGATAAATTGGATGAATCACTAGAAGCACAGGATGATTCTTCATTCAGACATCCCG 1240
Query 1256 ACACTAACTTCTATGGAGAAGAAGAAGCAGAACAGCCGAGAAATGCTGTTACAAATGAAC 1315
|||||||||| |||||||| ||||||| | | |||| ||||||||||| ||| |||||||
Sbjct 1241 ACACTAACTTTTATGGAGAGGAAGAAG-A-A-CAGCTGAGAAATGCTGCTACTAATGAAC 1297
Query 1316 AAGTGTCTTATCAAATCGATTCAAGT 1341
||||||||||||||||||||||||||
Sbjct 1298 AAGTGTCTTATCAAATCGATTCAAGT 1323
Score = 1094 bits (592), Expect = 0.0
Identities = 706/762 (93%), Gaps = 3/762 (0%)
Strand=Plus/Plus
Query 1538 AAATTTCCATGGCCGAGGCACTAAGAGCTGCGAGTATTTCACCTCAAAACGCAATACCCA 1597
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1650 AAA-TTCCATGGCCGAGGCACTAAGAGCTGCGAGTATTTCATCTCAAAACGCAATGCCCA 1708
Query 1598 GTGCAGGACAGCAAGCAGCAACTCTTGCACAACATCTTGCCTTAAATCCCTACTCTCATC 1657
|||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 1709 GTGCAGGACAACAAGCAGCAGCTCTTGCACAACACCTCGCCTTAAATCCATACTCTCATC 1768
Query 1658 AGCCTGAGATGCCTTTAGGACATTATGGCAATTTGATAAGCTACCCATTCATGGCACAGT 1717
|||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1769 AGCCCGGGATGCCTTTAGGGCATTATGGTAATTTGATAAGCTACCCATTCATGGCACAGA 1828
Query 1718 GTTACAACCCTTTCATGCTTTCAGCTTTTCAACAAGTGTTTCCTACTGGTAATCATCAGT 1777
|||||||||||| ||||| |||||||||||| |||| |||||| ||||| || |||||||
Sbjct 1829 GTTACAACCCTTACATGCCTTCAGCTTTTCAGCAAGCGTTTCCCACTGGGAACCATCAGT 1888
Query 1778 CTTTAGTTGATATGCTTATGCAATACAAGACTCAAACAACCGCTCCTCCTGTTCCTCCTC 1837
|||||| || ||||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1889 CTTTAGCTGCTATGCTTCCGCAATACAAAACTCAAGCAACCGCTCCTCCTGTTCCTCCTC 1948
Query 1838 CCTCTGCCTATGGGTTCGGTGGAGGCGCTGTCTCAAGTAATAACTTCCCTTTGAATCCCA 1897
||||||||||||| || || || ||||||| ||||||||| |||||||||||||||||||
Sbjct 1949 CCTCTGCCTATGGTTTTGGCGGTGGCGCTGCCTCAAGTAACAACTTCCCTTTGAATCCCA 2008
Query 1898 CAAGTGCTGCAAACTCCTACGAAGATGTCTTGAGCTCACAGTTTAATGA-GAGCAACCAC 1956
||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||
Sbjct 2009 CAAGTGCTGCAAACTCCTACGAAGATGTCTTGAGCTCCCAGTTTAATGATG-GCAATCAC 2067
Query 1957 TTGGCATCATCTCTTCAGCAGCAGAACGAAAAAACAACAGCATGGCATCAAGGACAACAA 2016
|||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct 2068 TTGGCATCATCTCTTCAGCAGCAGAATGAAAACTCAGCAGCCTGGCATCAAGGACAACAA 2127
Query 2017 GCCAACTCGCGAGTGGTTCCAGGAAGCGGATATTACAGCTACCCTGGTCATCAGAATCAG 2076
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2128 CCCAACTCGCGAGTAGTTCCAGGAAGCGGATATTACAGCTTCCCTGGTCATCAGAATCAG 2187
Query 2077 CAGCCTCCCGGTTTCCGTCAAGCCCAACAACTGCAACATCAGCAGCAGTCGTCTcaacaa 2136
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2188 CAGCCTCCCGGTTTCCGTCAAGCCCAACAACTGCAACAGCAGCAGCAGCCGTCTCAACAA 2247
Query 2137 caacaacaacaacaacaTTATGGAGGACATGGGTATGTGAGTCCTTACCATTCACAAGCT 2196
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2248 CAACAGCAACAACAACATTATGGAGGACATGGCTATGTGAGTCCTTACCATTCACAAGCT 2307
Query 2197 GTAATGTCACTAGAACATCTTCATCACCAATACCAACAACAGCAAAACGCTAGAGACGCG 2256
| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2308 GCAATGTCATTAGAACATCTTCATCACCAACACCAACAACAACAAAACGCTAGAGACGCG 2367
Query 2257 TCGAAACAGTCCCAACAATAGTTATGGCCCAACAACTACTGA 2298
|| |||||| ||||||| |||||||||||||||||||||||
Sbjct 2368 TCTAAACAGACCCAACAGCAGTTATGGCCCAACAACTACTGA 2409
Score = 292 bits (158), Expect = 6e-78
Identities = 184/197 (93%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1341 TTACAGATTTGAAAACAACCAACTGTTCCATCCTCCATCAGAAACAAATCCTCAGAGGCA 1400
|||| |||||||||||| ||||| ||| |||||||||||||||| |||||||| | |||
Sbjct 1425 TTACGGATTTGAAAACAGCCAACAGTTGAATCCTCCATCAGAAACCAATCCTCAAATGCA 1484
Query 1401 GAATCTCGATACCTACCCCAACATAATGCAGCAAGGATATACAAGTTCGTTACCCAACAC 1460
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1485 GAATCTCGATACCTACCCCAACGTAATGCAGCAAGGATATACAAGTTCGTTACCCAACAC 1544
Query 1461 TCTACTCCCATCAGGCATTCAAGATGGAAGAGAATCTAATCTTCACTACTCGCCTTTCAC 1520
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1545 TCTACTCCCATCAGGCATTCAAGATGGAAGAGAATCTGATCTTCACTACTTGCCTTTCAC 1604
Query 1521 AACACTATACAACACTG 1537
|||| |||||||||||
Sbjct 1605 AACAAAATACAACACTG 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94920890540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5