BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18160.1
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946388 jgi|Araly1|946388|scaffold_702617.1 2108 0.0
Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1 776 0.0
Ahg948309 jgi|Araly1|948309|scaffold_800196.1 139 5e-32
> Ahg946388 jgi|Araly1|946388|scaffold_702617.1
Length=1361
Score = 2108 bits (1141), Expect = 0.0
Identities = 1280/1344 (95%), Gaps = 21/1344 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAACGAAGGAAGTGACCCTTTACTTCAATACATGATTAGCCCGAGATTGAAAAAA 60
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 24 ATGGCTAACGAAGGAAGTGACCCATTACTTCAATACATGATTAGCCCTAGATTGAAAAAA 83
Query 61 CCTCCACAGCTGCTGTTTCCATTACCAGAAGACAACGAAGTTGCGATTCCGATGCCGATG 120
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 84 CCTCCACAGCTTCTGTTTCCATTACCAGAAGACAACGAAGTCGCGATTCCGATGCCGATG 143
Query 121 ACACCGTCGGAGTTCAAAGAGCGTTTAATCTTCGGACCCTTTTCATGTTCGCCGCGAGAT 180
|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 144 ACACCGTCGGAGTTCAAAGACCGTTTAATCTTCGGACCCTTTTCACGTTCTCCGCGAGAT 203
Query 181 TCGTCTCACTTCATCGATTCCA----T--GAAAC-A-----ACCGTCACCGTCGTCTTCT 228
|||||||||||||||||||||| | ||||| | |||||||||||||||||||
Sbjct 204 TCGTCTCACTTCATCGATTCCATCTCTCAGAAACAACCCTCACCGTCACCGTCGTCTTCT 263
Query 229 TCAACCGCCGTTAATAATCCTTTCTCCGATTCCTCAACCCTAGATCCTCTGCTTCCACCA 288
|| ||||||| | |||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 264 TCCACCGCCG-T--TAATCCTTTCTCTGATTCCTCAACCCTAGAGCCTCTGCTT---CCA 317
Query 289 CCACCACCACAACCAGAGCCATGGTTGTCCGATCAAACTTCGAGTCACTGTCAAGGCCAC 348
|||||||||||||||||||||||||| |||||||||| |||||| || ||||| ||||||
Sbjct 318 CCACCACCACAACCAGAGCCATGGTTTTCCGATCAAAATTCGAGCCATTGTCACGGCCAC 377
Query 349 GCTCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCTTCATCACCCA 408
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 378 GCACTTCACCGATCCAAAACAGCACCAGCAATGGCAGTAATCAATGATCTTCATCACCCA 437
Query 409 ATTCGTCAAAAAGATCCTACAGAGACGTCACGATCTGTAGTAAGACAAGCTTTTGCTCTT 468
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 438 ATTCGTCAAAAAGATCCTACAGAGACATCACGATCTGTAGTAAGACAAGCTTTTGCTCTT 497
Query 469 CTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCACTACGTT 528
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 498 CTCGTTGTGTATCTATCTTTAGGTGTGCTTATCTATTGGCTGAATCGTGATCACTACCTT 557
Query 529 GTGAATCAAACCCATCCTGTAGTTGATGGATTGTATTTTTGTATCGTTACAATGTGCACC 588
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 558 GTGAATCAAACCCATCCTGTTGTTGATGGATTATACTTTTGTATCGTTACAATGTGCACC 617
Query 589 ATTGGTTATGGAGACATCACTCCAAACAGTGTGGTTACTAAGCTGTTTTCGATTATGTTT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATTGGTTATGGAGACATCACTCCAAACAGTGTGGTTACTAAGCTGTTTTCGATTATGTTT 677
Query 649 GTGCTTGTTGGGTTTGGTTTCATTGATATTTTGCTTAGTGGGATGGTCTCTTATGTTCTT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GTGCTTGTTGGGTTTGGTTTCATTGATATTTTGCTTAGTGGGATGGTCTCTTATGTTCTT 737
Query 709 GACCTTCAAGAGAGCTATATGTTAGACTCTGCTAAGCGGAGAGATGAGCCTGAGAAGAGG 768
||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 738 GACCTTCAAGAGAGCTACATGTTAGACTCTGCTAAGCGGAGAGACGAGCCAGAAAAGAGG 797
Query 769 AGATCTTATATAATCGATGTCAAGAAAGGGAGAATGAGAATTAGGTTGAAAGTGGCTTTG 828
|||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 798 AGATCTTATATAATTGATGTGAAGAAAGGAAGAATGAGGATTAGGTTGAAAGTGGCTTTG 857
Query 829 GCATTAGGTGTTGTGGTTTTATGCATTGCTGTTGGTG-TTGGGATTATGCATTTCATTGA 887
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 858 GCATTAGGTGTTGTGGTTTTATGCATTGCTGTTGG-GATTGGGATAATGCATTTCATTGA 916
Query 888 GGAAATCGGGTGGTTGGATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTCGGGTA 947
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 917 GGAAATCGGGTGGTTGGATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTTGGGTA 976
Query 948 TGGAGATCGGGCTTTTAAGACATTGCCCGGTAGGCTTTTCGCTGCGATATGGCTGCTTGT 1007
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGGAGATCGGGCTTTTAAAACATTGCCCGGTAGGCTTTTCGCTGCGATATGGCTGCTTGT 1036
Query 1008 GTCTACATTAGCTGTGGCTCGAGCTTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAG 1067
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCTACATTAGCTGTGGCTCGGGCTTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAG 1096
Query 1068 GAATAGAGAACGGGCGAAGAAAGTGCTTTGTGAAACAATGTCTGTCTCTCAGTTTTTCGC 1127
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1097 GAATAGAGAACGGGCGAAGAAAGTGCTTTGTGAGACAATGTCTGTCTCTCAGTTTTTTGC 1156
Query 1128 TGCAGATATTGATAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATATACAAACTGAA 1187
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1157 TGCAGATATTGATAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATTTACAAACTGAA 1216
Query 1188 GGAGATGGAGAAAATAACCGATAAGGACATACTACCAATCTCCAAACAGTTTGACAAACT 1247
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1217 GGAGATGGAGAAAATAACCGATAAGGACATACTTCCAATCTCCAAACAGTTTGACAAACT 1276
Query 1248 CGACCGATGCAGCAACGGAAAGATCACTCTTTTAGATCTCTTGGAAGGTGGCAGTGGCGA 1307
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1277 CGACCGATGCAGCAACGGAAAGATTACTCTTTTAGATCTCTTGGAAGGTGGCAGTGGCGA 1336
Query 1308 TTGATCAATCCTCTGCAACTTTTT 1331
||||| | ||||||||||||||||
Sbjct 1337 TTGATGA-TCCTCTGCAACTTTTT 1359
> Ahg494336 jgi|Araly1|494336|fgenesh2_kg.8__152__AT5G46370.1
Length=1387
Score = 776 bits (420), Expect = 0.0
Identities = 732/876 (84%), Gaps = 48/876 (5%)
Strand=Plus/Plus
Query 448 GTAAGACAAGCTTTTGCTCTT-CTCGTTGTGTATCTCTCTCTAGGTGTGCTT-ATCTATT 505
|||| ||||||| ||||| || || ||||||||||||||| |||||||| || |||||||
Sbjct 450 GTAAAACAAGCTATTGCT-TTGCTTGTTGTGTATCTCTCTTTAGGTGTG-TTCATCTATT 507
Query 506 GGCTGAATCGTGATCA-CTACGTTGTGAATCAA-ACCCATCCTGTAGTTGATGGATTGTA 563
|| ||||||| ||| | |||| |||||| || || |||||||| ||||||| |||||
Sbjct 508 GGTTGAATCGAGAT-AGCTACAATGTGAA-GAAGACTCATCCTGTTGTTGATGCTTTGTA 565
Query 564 TTTTTGTATCGTTACAATGTGCACCATTGGTTATGGAGACATCACTCCAAACAGTGTGGT 623
|||||||| ||||||||||| || ||||| ||||||||||| || || | || |||||
Sbjct 566 CTTTTGTATTGTTACAATGTGTACAATTGGGTATGGAGACATTACGCCGGATAGCGTGGT 625
Query 624 TACTAAGCTGTTTTCGAT-TATGTTTGTGCTTGTTGGGTTTGGTTTCATTGATATTTTGC 682
|| |||||||||||||| | |||| ||||| |||||||||||||| || ||||| ||||
Sbjct 626 GACGAAGCTGTTTTCGATCT-TGTTCGTGCTCGTTGGGTTTGGTTTTATGGATATATTGC 684
Query 683 TTAGTGGGATGGTCT-CTTATGTTCTTGACCTTCAAGAGAGCTATATGTTAG--ACT-C- 737
||||||| ||||| | ||||||||||||| |||||||| | ||||||||||| ||| |
Sbjct 685 TTAGTGGAATGGT-TACTTATGTTCTTGATCTTCAAGAAAACTATATGTTAGAAACTGCG 743
Query 738 -TG-CT--AAGC--GGA---GAGATGAGCC-TGAGAAGAG-GAGATCTTATATAATCGAT 786
| | |||| | | || |||| || ||||| || || ||| |||||||| |||
Sbjct 744 AGGAATGAAAGCTTGAACTTGA-ATGA-CCGGGAGAA-AGCGAAATCGTATATAATTGAT 800
Query 787 GTCAAGAAAGGGAGAATGAGAATTAGGTTGAAAG-TGGCTTTGGCATTAGGTGTTGTGGT 845
|||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||||||
Sbjct 801 GTCAAGAAAGGGAGGATGAGGATTAGGTTGAAAGTTGG-GTTGGCATTGGGTGTTGTGGT 859
Query 846 TTTATGCATT-GCTGTTGGTGTTGGGATTATGCATTTCATTGAGGAAATCGGGTGGTTGG 904
|||||| || | | |||||||| |||||||||||| |||||||||||||||||||||
Sbjct 860 GTTATGCCTTGGAT-TTGGTGTTTTGATTATGCATTTTGTTGAGGAAATCGGGTGGTTGG 918
Query 905 ATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTCGGGTATGGAGATCGGGCTTTTA 964
||||||||||| |||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 919 ATTCGTTTTATTTCTCGGTTATGTCGGTTACTACGGTTGGGTATGGTGATCGGGCTTTTA 978
Query 965 AGACATTGCCCGGTAGGCTT-TTCGCTGCGATATGGCTGCTTGTGTCTACATTAGCTGTG 1023
| |||||||||||||||||| || |||||||||||| |||| |||||||| ||||||||
Sbjct 979 ATACATTGCCCGGTAGGCTTCTT-GCTGCGATATGGTTGCTGGTGTCTACTTTAGCTGTT 1037
Query 1024 GCTCGAGC-TTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAGGAATAGAGAACGGGC 1082
|||||||| |||||| || |||||||| || ||||| ||||||||||||||||| |||||
Sbjct 1038 GCTCGAGCGTTTTTT-TATTTGGCTGAAGCAAGAGTTGATAAGAGGAATAGAGAGCGGGC 1096
Query 1083 GAAGAAAGTGCTTTGTGAAA-CAATGTCTGTCTCTCAGTT-TTTCGCTGCAGATATTGA- 1139
|||||| |||||| | |||| || ||||| |||||||||| ||| | ||| ||||| ||
Sbjct 1097 GAAGAAGGTGCTTGGCGAAAACA-TGTCTATCTCTCAGTTCTTT-GATGCGGATATCGAC 1154
Query 1140 TAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATATACAAACTGAAGGAGATGGAGAA 1199
|| ||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 1155 TA-CAATGGCTGCGTGAGTAAAGCAGAGTTTGTGATATACAAACTAAAGAAGATGGAGAA 1213
Query 1200 AATAACCGATAAGGACATACTA-CCA-ATCTCCAAACAGTTTGACAAACTCGACCGATGC 1257
|||||||||||||||||| || || ||| ||||||||||| || |||||| |
Sbjct 1214 AATAACCGATAAGGACAT--TAACCCGATCGGTTTCCAGTTTGACAAGCTTGACCGAACC 1271
Query 1258 AGCAACGGAAAGATCACTCTTTTAGATCTCTTGGAA 1293
| | |||| ||| || ||||||||||||||||||
Sbjct 1272 AATAGTGGAAGGATTACACTTTTAGATCTCTTGGAA 1307
> Ahg948309 jgi|Araly1|948309|scaffold_800196.1
Length=978
Score = 139 bits (75), Expect = 5e-32
Identities = 191/244 (78%), Gaps = 20/244 (8%)
Strand=Plus/Plus
Query 351 TCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCT-TCATCACCCAA 409
||| ||||| || |||||||| || || ||||||| |||||| ||| | || ||||||||
Sbjct 313 TCTCCACCGGTCTAAAACAGCTCCTGCTATGGCTGCAATCAACGATGTATC-TCACCCAA 371
Query 410 TTCG-TCA-A-AA-AGATCCTA-CAGAGACGTC-ACGATCTGTAGTAAGACAAGCTTTTG 463
| | ||| | || ||| | | || | | || | ||| | |||||||||||| |||
Sbjct 372 AT-GATCAGAGAACAGA-GCAATCA-A-A-TTCGA-AATCCATTGTAAGACAAGCTCTTG 425
Query 464 CTCTT-CTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCAC 522
|| || ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 426 CT-TTGTTCGTTGTGTATCTCTCTGTAGGTGTGCTTATCTATTGGCTGAATCGAGATAAC 484
Query 523 TACGTTGTGAATCAAACCCATCCTGTAGTTGATGGAT-TGTATTTTTGTATCGTTA-CAA 580
|| ||||||||| || |||| ||| |||| || | |||| |||||||| || | |||
Sbjct 485 GACAATGTGAATCAGACTCATCTTGTTGTTGTTGC-TCTGTACTTTTGTATTGT-AGCAA 542
Query 581 TGTG 584
||||
Sbjct 543 TGTG 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56183111375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5