BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18170.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1 1779 0.0
Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413 224 1e-57
> Ahg493050 jgi|Araly1|493050|fgenesh2_kg.7__2483__AT4G18170.1
Length=1200
Score = 1779 bits (963), Expect = 0.0
Identities = 1141/1222 (93%), Gaps = 32/1222 (3%)
Strand=Plus/Plus
Query 1 AAAGTCCAAGCACCAATCTAGACC-TCTTAGGaaaaaaaCCTAAAAACCTAATCCCCAAA 59
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 AAAGTCCAAGCACCAATCTAGACCTTC-TAGGAAAAAAACCTAAAAACCTAATCCCCAAA 59
Query 60 CCTAAAAGGcttatctcatctcttcttctttgtcttc-tttactctttttttacctctct 118
||||||||||||||||| ||||||||||||||||||| |||| |||||||| | | |
Sbjct 60 CCTAAAAGGCTTATCTCCTCTCTTCTTCTTTGTCTTCTTTTA--CTTTTTTT---T-T-T 112
Query 119 cttcattgttcttcACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCTT 178
| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 113 C-TC-----TCTTCACCATGTCTAATGAAACCAGAGATCTCTACAACTACCAATACCCAT 166
Query 179 CATCGTTTTCGTTGCACGAAATGATGAATCTGCCTACTTCAAATCCATCTTCTTATGGAA 238
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 167 CATCGTTTTCCTTGCACGAAATGATGAATCTACCTACTTCAAATCCATCTTCTTATGGAA 226
Query 239 ACCTCCCATCACAAAACGGTTT-TAATCCATCTACTTATTCCTTCACCGATTGTCTCCAA 297
| || |||||||||||||||| | ||||||||||||| |||||||||||||| ||||||
Sbjct 227 ATATCTCATCACAAAACGGTTTGT-ATCCATCTACTTACTCCTTCACCGATTGCCTCCAA 285
Query 298 AGTTCTCCAGCAGCGTATGAATCTCTACTTCAGAAAA-CTTTTGGTCTTTCTCCCTCTTC 356
|||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 286 AGTTCTCCAGGAGCGTATGAATCTCTACTTCA-AAAATCTTTTGGTCTTTCTCCCTCTTC 344
Query 357 CTCAGAGGTTTTCAATTCTTCGATCGATCAAGAACCGAACCGTGATGTTACTAATGACGT 416
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 345 CTCAGAGGTTTTCAACTCTTCGATTGATCAAGAACCAAACCGTGATGTTACTAATGATGT 404
Query 417 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTCCTTCTAATTCTTCCTC 476
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 405 AATCAATGGTGGTGCATGCAACGAGACTGAAACTAGGGTTTCTGCATCTAATTCTTCATC 464
Query 477 TAGTGAGGCTGATCACCCCGGTGAAGATTCCGGTAAGAGCCGGAGGAAACGAGAGTTAGT 536
||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 465 TAGTGAGGCTGATCATCCCGGGGAAGATTCCGGCAAGAGTAGGAGGAAACGAGAGTTAGT 524
Query 537 CGGTGAAGAAGATCAAATTTCCAAAAAAGTTGGGAAAACGAAAAAGACTGAGGTGAAGAA 596
||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 CGGAGAAGAAGATCAAAGTTCCAAAAAAGTTGGGAAAACGAAAAAGAATGAGGTGAAGAA 584
Query 597 ACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 ACAAAGAGAGCCACGAGTCTCGTTTATGACTAAAAGTGAAGTTGATCATCTTGAAGATGG 644
Query 657 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCCAAGGAGTTA 704
Query 717 CTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTCCAAGA 776
||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 705 CTATAGATGTACAACGCAAAGGTGCAACGTGAAGAAACGAGTGGAGAGATCGTTTCAAGA 764
Query 777 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCCGACTAATCT 824
Query 837 TCGAGGAAGTTCTGCCGCGGCTGCTATGTTCTCCGCAGACCTCATGACTCCAAGAAGCTT 896
|| |||||||| || || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 825 CCGGGGAAGTTCCGCGGCAGCTGCTATGTTCTCTGCAGATCTCATGACTCCAAGAAGCTT 884
Query 897 TGCACATGATATGTTTAGGACGGCAGCTTATACTAACGGCGGTTCTGTGGCGGCGGC--- 953
|||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 885 TGCACATGATATGTTTAGGACGGCGGCTTATACTAACGGTGGTTCTGCGGCGGCGGCGGC 944
Query 954 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATTCAAACCCTAGTTCTCA 1013
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 945 TTTGGATTATGGATATGGACAAAGTGGTTATGGTAGTGTGAATGCAAACCCTAGTTCTCA 1004
Query 1014 CCAAGTGTATCATCAAGGGGGTGAGTATGAGCTCTTGAGGGAGATTTTTCCTTCAATTTT 1073
|||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1005 TCAAGAGTATCATCAAGGGGGTGAGTACGAGCTCTTGAGGGAGATCTTTCCTTCAATTTT 1064
Query 1074 CTTTAAGCAAGAGCCTTGATCGATCATTGTTATAACTA-Catatattatat--atatTGA 1130
||| ||||||||||||||||| ||||||||||||| || | || ||| ||| | | ||
Sbjct 1065 CTTCAAGCAAGAGCCTTGATCAATCATTGTTATAATTAAC-TA-ATT-TATTGAGAGAGA 1121
Query 1131 GAGAGAGAGGTAGAGaaaaaaaaaaCTTATATGTAACTTAAGATCTTATTTTGTCTCTCT 1190
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1122 GAGAGAGAGGTAGAGAAAAAAAA--CTTATATGTAACT-AAGATCTTATTTTGTCTCTCT 1178
Query 1191 TATTTGCATGTACATATTTTTT 1212
||||||||||||||||||||||
Sbjct 1179 TATTTGCATGTACATATTTTTT 1200
> Ahg313633 jgi|Araly1|313633|fgenesh1_pm.C_scaffold_1002413
Length=846
Score = 224 bits (121), Expect = 1e-57
Identities = 202/241 (84%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 591 GAAGAAACAAAGAG-AGCCACGAGTCT-CGTTTATGACTAAAAGTGAAG-TTGATCATCT 647
||||||| | |||| ||| | | || | | |||||||| ||||| | || ||||||||||
Sbjct 345 GAAGAAAGAGAGAGAAGCTA-GGGT-TGCATTTATGACCAAAAGCG-AGATTGATCATCT 401
Query 648 TGAAGATGGTTATAGATGGAGAAAATACGGCCAAAAGGCTGTAAAAAATAGCCCTTATCC 707
||||||||||||||||||||||||||| || |||||||| || || || || ||||||||
Sbjct 402 TGAAGATGGTTATAGATGGAGAAAATATGGACAAAAGGCCGTCAAGAACAGTCCTTATCC 461
Query 708 AAGGAGTTACTATAGATGTACAACACAAAAGTGCAACGTGAAGAAACGAGTGGAGAGATC 767
||||||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||
Sbjct 462 AAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGATC 521
Query 768 GTTCCAAGATCCAACGGTTGTGATTACAACTTACGAGGGTCAACACAACCACCCGATTCC 827
|| |||||||| || | || |||||||| ||||| || |||||||||| ||||| ||
Sbjct 522 ATTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCCC 581
Query 828 G 828
|
Sbjct 582 G 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5