BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18180.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329713 jgi|Araly1|329713|fgenesh1_pm.C_scaffold_7001940 2034 0.0
> Ahg329713 jgi|Araly1|329713|fgenesh1_pm.C_scaffold_7001940
Length=1245
Score = 2034 bits (1101), Expect = 0.0
Identities = 1202/1250 (96%), Gaps = 10/1250 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATTTTCGTTACCTGAAATTTTTCTTCTTCTTCATCTTTGT-A-A-TATTATCT 57
|||||||||||||||||||||||| ||||| || |||||||||||| | | ||||||||
Sbjct 1 ATGGAGAATTTTCGTTACCTGAAAATTTTC-TC--CTTCATCTTTGTAATATTATTATCT 57
Query 58 CCTTCTGAAGCAGGAAA-TATAGTAGACAAAAGCTCTGTTTTCCTTGTTGATGTCCGTAG 116
||||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 58 TCTTCTGAAGCA-GAAACCAGAGTAGACAAAAGCTCTGTTTTCCTTGTTGATATCCGTAG 116
Query 117 CTTTGGTGCTCGAGCTAATGACCACAGAGACCACACCAAGGCCTTTGTAGCAGCATGGGA 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTTTGGTGCTCGAGCTAACGACCACAGAGACCACACCAAGGCCTTTGTAGCAGCATGGGA 176
Query 177 CAAAGCATGCAAATCATCTTCAAGCTCTGTGA-ATCTTATAATCCCAAGAGGTGAATTCT 235
||| ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 177 CAAGGCATGTAAATCATCTTCAAGCTCTGT-ACATTTTATAATCCCAAGAGGTGAATTCT 235
Query 236 CTGTTGGTTCTCTCAGATTCTCTGGTCCTTGCACTAATGTATCCAATCTCACTGTCCGAG 295
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 236 CTGTTGGTCCTCTCAGATTCTCTGGTCCTTGCACTAATGTATCCAATCTCACTGTTCGAG 295
Query 296 TTAAGGCATCAACTGATCTGTCAAAGTATAGATCAGGCGGTGGTTGGATTCAGTTTGGAT 355
|||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||
Sbjct 296 TTAAGGCATCAACTGACCTATCAAAGTATAGATCAGGCGGTGCTTGGATTGAGTTTGGAT 355
Query 356 GGATCAATGGCTTAACTCTTACCGGAGGTGGAACATTTGACGGTCAAGGCGCTTTAGCTT 415
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 356 GGATCAATGGGTTAACTCTTACTGGAGGTGGAACATTTGACGGTCAAGGCGCCTTAGCTT 415
Query 416 GGCCGTTTAATAACTGTACTTCTGATTCTAACTGCAAACTCCTTCCAACTAGCTTGAAGT 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 416 GGCCGTTTAATAACTGTACTTCTGATTCTAACTGCAAACTCCTCCCAACTAGCTTGAAGT 475
Query 476 TTGTGGGGATGAACAGAACAGTTGTGAGAAGGATAAGCTCAGTGAATAGCAAGTTCTTTC 535
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 476 TTGTGGGGATGAACAGAACAGTGGTAAGAAGGATAAGCTCAGTGAATAGCAAGTTCTTTC 535
Query 536 ATATAGCATTAGTAGAATGCAGAGACTTCAAAGGGACAAGACTCAACATCACTGCTCCTT 595
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATATAGCATTAGTAGAGTGCAGAGACTTCAAAGGGACAAGACTCAACATCACTGCTCCTT 595
Query 596 CTGATAGTCCAAATACAGATGGTATACATATCGAACGCAGTTCGAATGTGTATTTCTCGC 655
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 596 CTGATAGTCCAAATACAGATGGTATACATATCGAACGCAGCTCGAATGTGTATTTCTCGC 655
Query 656 GTTCACATATCGCAACTGGAGATGATTGTGTCTCGATAGGACAAGGAAATTCTCAGATTA 715
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 656 GTTCACATATCGCAACTGGAGATGATTGTGTCTCTATAGGACAAGGAAATTCTCAGATCA 715
Query 716 CAATCACAAGTATCAAATGTGGACCAGGACATGGTATCAGCGTTGGGAGTTTAGGGAGAT 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 CAATCACAAGTATCAAATGTGGACCAGGACATGGTATAAGCGTTGGGAGTTTAGGGAGAT 775
Query 776 ATCCAAATGAGAAAGATGTTAATGGACTGGTGGTGAAGGATTGCAAGATAAGCGGTACGA 835
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 776 ATCCAAATGAGAAAGATGTTAAAGGACTGGTGGTGAAGGATTGCAAGATTAGCGGTACGA 835
Query 836 CGAATGGGATAAGGATCAAAACTTGGGCTAATTCTCCTGGTCTAAGTGCTGCTACCAACA 895
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 CGAATGGGATAAGGATCAAAACGTGGGCTAATTCTCCTGGTCTAAGTGCTGCTACCAACA 895
Query 896 TGACTTTTGAGAATATTATTATGAACAATGTGACTAATCCAATCATCATTGATCAGTCTT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGACTTTTGAGAATATTATTATGAACAATGTGACTAATCCAATCATCATTGATCAGTCTT 955
Query 956 ATTGTCCTTTCTCTTCTTGCATTTCAAATGTACCTTCAAAGGTTGAGCTGAGTGAGATAT 1015
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 956 ATTGTCCTTTCTCTTCTTGCCTTTCAAATGTACCTTCGAAGGTGGAGCTGAGTGAGATAT 1015
Query 1016 ACTTCAAGAATATAAGAGGGACATCATCTTCACTGGTCGCGGTGCAGCTGCATTGTAGCA 1075
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 ACTTCAAGAATATAAGAGGGACATCATCTTCACGGGTCGCGGTGCAGCTGCATTGTAGCA 1075
Query 1076 GAGGAATGCCATGTAAAAAAGTGTACTTAGAGAATGTTCATCTTGATCTTTCTTCGTCTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 GAGGAATGCCATGTAAAAAAGTGTACTTAGAGAATGTTCATCTTGATCTTTCTTCTTCTG 1135
Query 1136 ATGGAGGAAGAAAACAGAGTAGTAACAGAGGAAATGAAGCTGTCTCTTCTTCTTGTAGAA 1195
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1136 ATGGAGGAAGAAAACAGAGCAGAAACAGAGGAAAAGAAGCTGTCTCTTCTTCTTGTAGAA 1195
Query 1196 ACGTTAGAGCTAATTACATTGGGACTCAAATCCCACCTCCATGTCACTAA 1245
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1196 ACGTTAGAGCTAATTACATTGGAACTCAAATCCCACCTCCATGTCACTAA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5