BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18190.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890381 jgi|Araly1|890381|Al_scaffold_0007_2367 1498 0.0
> Ahg890381 jgi|Araly1|890381|Al_scaffold_0007_2367
Length=1122
Score = 1498 bits (811), Expect = 0.0
Identities = 1026/1129 (91%), Gaps = 17/1129 (2%)
Strand=Plus/Plus
Query 133 ATGGAACTAGAATCAGAAACTCAAGAACTCCATCTTCACGTAAATGGCGAACCTGAAGGG 192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGAACTAGAATCAGAAACTCAAGAACTCCATCTTCGCGTAAATGGCGAACCTGAAGGG 60
Query 193 AAATTTTCAACAGAAGAGAGAAGTCACAAGTACTCTTGGAGGTTAAGAGTGTCTCTCTAT 252
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 AAAGTTTCAACAGAAGAGAGAAGTCACAACTACTCGTGGAGGTTAAGAGTGTCTCTCTAT 120
Query 253 GTCACTCTCCTCTTAGCTGGAGAGACAATAGCCACTCTCTTAGGTAGACTTTACTACGAA 312
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GTCACTCTTCTCTTAGCTGGAGAGACAATAGCCACTCTCTTAGGTAGACTTTACTATGAC 180
Query 313 AAAGGCGGTAAAAGCACATGGCTCGAAACCTTGGTTCAGCTTGTAGGGTTTCCTTTAACC 372
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 181 AAAGGCGGTAAAAGCACATGGCTCGAGACCTTGGTTCAGCTTGTTGGGTTTCCTCTAACC 240
Query 373 CTTCCTTGCTATTATTACTTAAAGCCTGAGCCGTCCAAGACTAAAACCATTACCaaaaaa 432
|||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||| |||
Sbjct 241 CTTCCTTGCTATTATTACATAAAGCCTGAGCCTTCCAAGAATAAAACCATAACCAAGAAA 300
Query 433 aCTACTTCTTCCTTCTTGACACTATCTTTAGTGTATATTGGACTTGGCTTGCTTGTTGCT 492
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CCTACTCCTTCCTTCTTGACACTGTCTTTAGTGTATATTGGACTTGGCTTGCTTGTTGCG 360
Query 493 GGACATTGTATTTTGTACTCATTTGGGCTACTTTACCTTCCTGTCTCAACTTTCTCTTTG 552
|| || || || ||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 361 GGGCACAGTGTTATGTACTCCTTTGGATTACTCTACCTTCCTGTCTCAACTTTCTCTTTG 420
Query 553 ATCTCTGCGTCGCAATTGGCTTTTAACGCCGTCTTCTCTTACTTCCTAAACTCACAAAAA 612
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 ATCTCCGCGTCGCAATTGGCTTTTAATGCCGTCTTCTCTTACTTCCTAAACTCACAAAAA 480
Query 613 ATCACACCATTTATACTCAATTCACTTGTTCTCTTAACCATATCTTCTACACTTCTTGTT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCACACCATTTATACTCAATTCACTTGTTCTCTTAACCATATCTTCTACACTTCTTGTT 540
Query 673 ATCCAACATGAACCAGAATCTCCCTCTTCTACTTCAAAGTCCGCAGCCAAGTCCAAGTAT 732
||||||||||| || |||||| | | | | |||| ||| | |||||||| |||
Sbjct 541 ATCCAACATGAGCCTGAATCTTC-TAAT-T-CTTCT---TCCTCT---AAGTCCAACTAT 591
Query 733 GTGATTGGATACATCTGCGCGGTCGGTAGCTCAGCTGGTTATTCTCTGGTGCTTTCTTTA 792
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 592 GTGATTGGATACATCTGCGCGATCGGTGGCTCAGCTGGTTATTCTCTGGTGCTTTCTTTA 651
Query 793 ACAGATTACGCGTTCGAAAAGATTCT-AAAGAAATACACATTCAAGGCTATTTTAGACAT 851
||||||||||||||||||||||| || |||||||||||| || ||||| |||||||| ||
Sbjct 652 ACAGATTACGCGTTCGAAAAGAT-CTTAAAGAAATACACTTTTAAGGCGATTTTAGATAT 710
Query 852 GGCCACATATCCGTCTATGGTAGCTACTTGTGTAGTTGTGGTAGGACTTTTTGGAAGTGG 911
||| |||||||| ||| |||||||||||||| | |||||||| |||||||||||||||||
Sbjct 711 GGCTACATATCCATCTTTGGTAGCTACTTGTATTGTTGTGGTTGGACTTTTTGGAAGTGG 770
Query 912 TGGGTGGAAAAAGCTGAGTACAGAAATGGAAGAGTTTCAACTAGGGAAAAGCTCATACAT 971
||||||||||| | |||||||||||||| ||||||||||||||||||||| ||| ||| |
Sbjct 771 TGGGTGGAAAATGTTGAGTACAGAAATGCAAGAGTTTCAACTAGGGAAAAACTCTTACCT 830
Query 972 TTTGATAAACA-TCGGTTCAACGATATCATGGCAAGCTTGTTTGA-TTGGAAGTGTTGGT 1029
|||||||| || | ||||||||||||||||||||||||| ||| | |||| |||||||||
Sbjct 831 TTTGATAA-CAATTGGTTCAACGATATCATGGCAAGCTT-TTTCAATTGGTAGTGTTGGT 888
Query 1030 TTGATTATCGAAGTTTCATCGCTTTTTTCCAATGTCATAAGCACTCTTTGTTTACCAGTT 1089
|||||| | |||||||||||||||||||| ||||||||||| ||| | |||||||| ||
Sbjct 889 TTGATTCTTGAAGTTTCATCGCTTTTTTCGAATGTCATAAGTACTATATGTTTACCCGTG 948
Query 1090 GTGCCTGTTCTTGCTGTTGTCTTCTTCCGTGATGAGATGAGTGGAATCAAGTTGGTTGCA 1149
|| |||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||
Sbjct 949 GTTCCTGTTCTCGCTGTTGTGTTCTTCCGCGATGAGATGAGCCGAATCAAGTTGATTGCA 1008
Query 1150 ATGTTTTTGGCCATCTGGGGATTTGTTTCTTATGGTTATCAGCATTATGTCAATGATAGA 1209
|||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||
Sbjct 1009 ATGTTTTTGGCCATATGGGGATTTGTTTCTTATGCTTACCAGCATTATGTCGATGATCGA 1068
Query 1210 AAGCCAGAAGAAGACCAAGAGCTTCCTCAGTC-TAAAGAAGAAGAAGAA 1257
|| ||||||||||| ||||||||||| || | | ||||| ||||||||
Sbjct 1069 AAACCAGAAGAAGAGCAAGAGCTTCCACAA-CATGAAGAAAAAGAAGAA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5