BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18195.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890380 jgi|Araly1|890380|Al_scaffold_0007_2366 1853 0.0
Ahg890379 jgi|Araly1|890379|Al_scaffold_0007_2365 1094 0.0
> Ahg890380 jgi|Araly1|890380|Al_scaffold_0007_2366
Length=1182
Score = 1853 bits (1003), Expect = 0.0
Identities = 1127/1187 (95%), Gaps = 7/1187 (1%)
Strand=Plus/Plus
Query 25 ATGGAAATAACTCAAGTAA-TCTATGTCAATGATCATAACAACATAGAAGCAAACCTAAC 83
||||||| |||||||| || |||||||||||||| || | ||||||||||||||||||||
Sbjct 1 ATGGAAAGAACTCAAG-AACTCTATGTCAATGATGATCAGAACATAGAAGCAAACCTAAC 59
Query 84 AGGTCAGGAGGAAATGAATACCACCATGGAAATCGAATCTTCGTCCGTACCTCAATCGAA 143
|||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 60 AGGTCAGGAGGAAATGAATACCACCATGAAAATCGAATCTTCGTCTGTTCCTCAATCGAA 119
Query 144 GAACTATAAGAAATGGCTTCGTATTTCCATTTACGTGTTCTTTGTCCTTGCTTGCCAAGC 203
||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 120 GAATTATAAGAAATGGCTTCGTATTTTCATTTATGTGTTCTTTGTCCTTGCCTGCCAAGC 179
Query 204 ACTTTCTACAATTTTGGGCAGAGTTTACTATGAAAATGGTGGGAAGAGTACATGGATGGG 263
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 ACTTTCTACAATTTTGGGCAGAGTGTACTATGAAAATGGTGGGAAGAGTACATGGATGGG 239
Query 264 AACACTTGTCCAACTAATCGGCTTCCCTGTTCTGTTTCTCTTCCGCTTCTTTTCCCAAAC 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AACACTTGTCCAACTAATCGGCTTCCCTGTTCTGTTTCTCTTCCGCTTCTTTTCCCGAAT 299
Query 324 CAAAAATCCCAAACCAACAGAAGCAGATTTCAGAAAGTTCTCTTCCTTCACCATTCTTGG 383
||||||| ||||| ||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 300 CAAAAATTCCAAATCAACAGATGCAGATTACAGAAAGTTCTCTTCCTACACCATTCTTGG 359
Query 384 ATCAGTTTACATCGTTACTGGACTATTAGTGTCTGCTAACTCTTATATGTCCTCTGTTGG 443
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 360 ATCAGTTTACATTGTTACTGGACTGTTAGTGTCTGCTAATTCTTATATGTCCTCTGTTGG 419
Query 444 TTTACTATACTTACCAGTTTCTACTTTCTCCCTCATCTTGGCCTCACAATTGGCCTTCAC 503
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTACTATACTTACCTGTTTCTACTTTCTCCCTCATCTTGGCCTCACAATTGGCCTTCAC 479
Query 504 TGCCTTCTTCTCATATTTTCTAAACTCGCAGAAGTTCACACCTTTCATTGTGAATTCTCT 563
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCCTTCTTCTCATATTTCCTAAACTCGCAGAAGTTCACACCTTTCATTGTGAATTCTCT 539
Query 564 GTTTCTCCTTACTATTTCCTCTGCCCTCCTCGTGGTCAACACTGATTCGGAAAACACAGC 623
|| ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 540 ATTCCTCCTCACTATTTCCTCTGCCCTCCTCGTGGTAAACACTGATTCGGAAACCACAGC 599
Query 624 AAAAGTGTCTAGAGTAAAATATGTGATAGGGATAATATGTACCATTGGTGCTTCTGCTGG 683
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AAAAGTTTCTAGAGTAAAATATGTGATAGGGATCATATGTACCATTGGTGCTTCTGCTGG 659
Query 684 GATTGGATTGCTGCTATCCCTGGTACAACTGATCCTCAGGAAGGTTTTAAAGAAGCAAAC 743
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GATTGGACTGCTGCTATCTCTGGTACAACTGATCCTCAGGAAGGTTTTAAAGAAGCAAAC 719
Query 744 ATTCTCAACGGTCACTGACTTGGTCGCTTACCAATCTCTAGTTGCAAGCTGTGTGGTTCT 803
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTCTCAACGGTTACGGACCTGGTCGCTTACCAATCTCTAGTTGCAAGCTGTGTGGTTCT 779
Query 804 CATAGGACTTTTCGCAAGCGGGGAGTGGAAAACTTTAACAAGTGAGATGGAAAACTACAA 863
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 780 CATAGGACTTTTCGCAAGCGGAGAGTGGAAAACTTTAACAAGTGAGATGGAAAACTACCA 839
Query 864 ACTGGGGAAAGTGCCATACGTTATGACTTTGGCCTCGATAGCTATTTCCTGGCAAGTCTA 923
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTGGGGAAAGCGCCATACGTTCTGACTTTGGCCTCGATAGCTATTTCCTGGCAAGTCTA 899
Query 924 CACCATTGGCGTCGTGGGACTGATCTTTGAGTCATCTTCTGTGTTCTCCAATTCCATAAC 983
||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 900 CACCATTGGTGTTGTGGGACTGATCTTCGAGTCATCCTCTGTGTTCTCCAATTCCATAAC 959
Query 984 TGCTGTGGGATTGCCTATAGTTCCAGTTGTAGCAGTGATTGTTTTCCATGATAAAATGAA 1043
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 960 AGCTGTGGGATTGCCTATAGTTCCAGTTGTAGCAGTGATAGTTTTCCATGATAGAATGAA 1019
Query 1044 CGCGTCAAAGATCTTCTCCATCATTTTAGCTATCTGGGGATTCATTTCATTTGTCTATCA 1103
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1020 CGCGTCAAAGATCTTCTCCATCGTTTTAGCTATCTGGGGCTTCATTTCATTTGTCTATCA 1079
Query 1104 GCACTACCTCGACGA-AAAGAAGTTGAAGACTAGCCACACAAGTCCTGTAGGAGATCCTC 1162
|||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 GCACTACCTCGATGAGAAA-AAGTTGAAGACTAGCCACACAAGTCCTGTTGGAGATCCTC 1138
Query 1163 ATCTACTACCTGCTGAGGAAGGTCACACAAACATACATAGTGTATGA 1209
|||||| | || |||||||||||||||||||||||| |||||||||
Sbjct 1139 ATCTAC--C-TGTTGAGGAAGGTCACACAAACATACAAAGTGTATGA 1182
> Ahg890379 jgi|Araly1|890379|Al_scaffold_0007_2365
Length=1182
Score = 1094 bits (592), Expect = 0.0
Identities = 948/1115 (85%), Gaps = 44/1115 (4%)
Strand=Plus/Plus
Query 118 GAATCTTCGTCCGTACCTCAATCGA-AGAACTATAAGAA-ATGGCTTCGTATTTCCATTT 175
||||| || || ||||||||| ||| | |||||||| || ||||| ||| | ||||| |
Sbjct 76 GAATCATCATCGGTACCTCAAACGACA-AACTATAA-AAGGTGGCTCCGTGTCTCCATAT 133
Query 176 ACGTGT-TCTTTGTCCT-TGCTTGCCAAGCACTTTCTACAATTTTGGGCAGAGTT-TACT 232
|||| | |||||||||| | | |||||| ||||| |||||||| |||| ||| || ||||
Sbjct 134 ACGT-TATCTTTGTCCTATTC-TGCCAACCACTTGCTACAATTCTGGGTAGA-TTGTACT 190
Query 233 ATGAAAATGGTGGGAAGAGTACATGGATG-GG-AACACTTGTCCAACTAATCGGCTTCCC 290
|||||||||| ||||| || |||| ||| || ||||||| | ||||| || ||||||||
Sbjct 191 ATGAAAATGGAGGGAATAGCACAT--ATGTGGTAACACTTCTTCAACTCATTGGCTTCCC 248
Query 291 TGTTCTGTTTCTCTTCCGCTTCTTTTCCCAAACCA-AAAATCCCAAACCAACAGA-AGCA 348
||||||| ||||||||||||||||||| | || || | || |||||| ||||||| | ||
Sbjct 249 TGTTCTGGTTCTCTTCCGCTTCTTTTCACGAATCAGACAA-CCCAAATCAACAGATA-CA 306
Query 349 GATTTCAGAAAGTTCTCTTCCTTCACCATTCTTGGATCAGTTTACATCGT-TACTGGACT 407
||||||| ||| | |||||||||||| |||| ||| || ||||| || ||||||||
Sbjct 307 AATTTCAGTCAGTCCCCTTCCTTCACCACCCTTGCATCGGTATACAT-GTGCACTGGACT 365
Query 408 ATTAGTGTCTGCTAACT-CTTATATGTCCT-CTGTTGGTTTACTATACTTACCAGTTTCT 465
|||| |||||| | | ||||| ||| || | ||||| || || ||||||||||| |||
Sbjct 366 GCTAGTATCTGCTTA-TGCTTATTTGT-CTGCGGTTGGGTTGCTCTACTTACCAGTCTCT 423
Query 466 ACTTTCTCCCTCATCTTGGCCTCACAATTGGCCTTCACTGCCTTCTTCTCATATTTTCTA 525
||||||||||||||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct 424 ACTTTCTCCCTCATCTTGGCCTCGCAGTTGGCCTTCACTGCTTTTTTCTCATATTTCCTT 483
Query 526 AACTCGCAGAAGTTCACACCTTTCATTGTGAATTCTCTGTTTCTCCTTACTATTTCCTCT 585
|||||||| |||||||| |||||||| || |||||| |||||||||| ||| ||||||||
Sbjct 484 AACTCGCAAAAGTTCACTCCTTTCATCGTCAATTCTTTGTTTCTCCTCACTGTTTCCTCT 543
Query 586 GCCCTCCTCGTGGTCAACACTGATTCGGAAAACACAGCAAAAGTGTCTAGAGTAAAATAT 645
|| || |||||||||||||||||||| |||||| |||||| || ||||||||| |||||
Sbjct 544 GCTCTTCTCGTGGTCAACACTGATTCAGAAAACTCAGCAACTGTATCTAGAGTACAATAT 603
Query 646 GTGATAGGGATAATATGTACCATTGGTGCTTCTGCTGGGATTGGATTGCTGCTATCCCTG 705
||||| ||| | ||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 604 GTGATCGGGTTCATATGTACCATTGGTGCTTCTGCTGGGATTGGACTGCTACTATCTCTG 663
Query 706 GTACAACTGATCCTCAGGAAGGTTTTAAAGAAGCAAACATTC-TCAACGGTCACT-GACT 763
|||||||| || ||||||| ||||| | ||| || ||| || || | |||| | ||||
Sbjct 664 ATACAACTGCTCTTCAGGAAAGTTTTCACGAATCATACA-TCGTCGGCAGTCA-TGGACT 721
Query 764 TGGTCGCTTACCAATCTCTAGTTGCAAGCTGTGTGGTTCTCATAGGACTTTTCGCAAGCG 823
||| | |||||| ||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 722 TGGCCATTTACCAGTCTCTCGTTGCAAGTTGTGTGGTTCTCATAGGACTTTTTGCAAGTG 781
Query 824 GGGAGTGGAAAACTTTAACAAGTGAGATGGA-AAACTACAAACTGGGGAAAGTGCCATAC 882
| |||||| ||||||| |||||||||| || |||||||||||||||||||||| ||||
Sbjct 782 GAGAGTGGGAAACTTTGCCAAGTGAGAT-GAGAAACTACAAACTGGGGAAAGTGTCATAT 840
Query 883 GT-TATGACTTTGGCCTCGA-TAGCTATTTCCTGGCAAGTCTACAC-CATTGG-CGTCGT 938
| | |||||||| |||| | |||||||||||||||||| ||||| | |||| | ||||
Sbjct 841 ATCT-TGACTTTGTCCTC-AGCAGCTATTTCCTGGCAAGTATACACTC-TTGGTC-TCGT 896
Query 939 GGGACTGATCTTTGAGTCATCTTCTGTGTTCTCCAATTCCATAACTGCTGTGGGATTGCC 998
|||| ||||||| |||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 897 GGGATTGATCTTCGAGTCATCCTCTGTGTTCTCCAATTCCATTACAGCTGTGGGATTGCC 956
Query 999 TATAGTTCCAGTTGTAGCAGTGATTGTTTTCCATGATAAAATGAACGCGTCAAAGATCTT 1058
|||||||||||||||||||||||| |||||||| ||||| ||| |||| ||||| |||||
Sbjct 957 TATAGTTCCAGTTGTAGCAGTGATAGTTTTCCACGATAAGATGGACGCATCAAAAATCTT 1016
Query 1059 CTCCATCATTTTAGCTATCTGGGGATTCATTTCATTTGTCTATCAGCACTACCTCGACGA 1118
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1017 CTCCATCATTTTAGCTATCTGGGGCTTCCTTTCATTTGTCTATCAGCACTACCTCGACGA 1076
Query 1119 AAAGAA-GTTGAAGACTAGCCACACAAGTCCTGTAGGAGATCCTCATCTACTACCTGCTG 1177
||| || |||||||||||||||||||||| |||||| ||||| ||| | ||||||| ||
Sbjct 1077 AAA-AATGTTGAAGACTAGCCACACAAGTGCTGTAGAAGATCTTCA-C--CTACCTGTTG 1132
Query 1178 AGGAAGGTCACACAAACATACATAGTGTATGATCA 1212
|||||||||||||||||||||| | | ||||||||
Sbjct 1133 AGGAAGGTCACACAAACATACAAACT-TATGATCA 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5