BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18197.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890379 jgi|Araly1|890379|Al_scaffold_0007_2365 1705 0.0
Ahg890380 jgi|Araly1|890380|Al_scaffold_0007_2366 1094 0.0
> Ahg890379 jgi|Araly1|890379|Al_scaffold_0007_2365
Length=1182
Score = 1705 bits (923), Expect = 0.0
Identities = 1105/1190 (93%), Gaps = 23/1190 (2%)
Strand=Plus/Plus
Query 142 ATGGACAGATCTCAAGAACACTATGCCAATGGTGACCAGAACTTAGAAGCAAACCTTAT- 200
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACAGATCTCAAGAGCTCTATGCTAATGGTGACCAGAACTTAGAAGCAAACCTTATA 60
Query 201 AGATCATGAGGTGGTAACTGAATCATCATCATCAGCTGTGCCTCAAACCGA-GAACTATA 259
|| |||||| |||||||| | ||||||||| | || ||||||| ||| |||||||
Sbjct 61 AG-TCATGA---GGTAACTG-A--ATCATCATC-G--GTACCTCAAA-CGACAAACTATA 109
Query 260 AAAGGTGGCTTCGTGTCTCCATATACGTAATCTTTGTCCTCTTTTGCCAGCCACTAGCTA 319
|||||||||| ||||||||||||||||| ||||||||||| || ||||| ||||| ||||
Sbjct 110 AAAGGTGGCTCCGTGTCTCCATATACGTTATCTTTGTCCTATTCTGCCAACCACTTGCTA 169
Query 320 CAATTCTGGGTAGATTGTACTATGAAAATGGAGGAAATAGCACATATGTGGTAACACTTC 379
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 170 CAATTCTGGGTAGATTGTACTATGAAAATGGAGGGAATAGCACATATGTGGTAACACTTC 229
Query 380 TTCAACTCATTGGCTTCCCTGTACTGGTTCTGTTCCGCTTCTTTTCTCGAATCAGGCAAC 439
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 230 TTCAACTCATTGGCTTCCCTGTTCTGGTTCTCTTCCGCTTCTTTTCACGAATCAGACAAC 289
Query 440 CCAAATCAACAGATACAAATTTCAGTCAGTCCCCTTCCTTCACCACCCTTGCATCGGTTT 499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 290 CCAAATCAACAGATACAAATTTCAGTCAGTCCCCTTCCTTCACCACCCTTGCATCGGTAT 349
Query 500 ACTTGTGCACTGGACTGCTAGTGTCCGCTTATGCTTATTTGTCTGCAGTAGGGTTGCTCT 559
|| ||||||||||||||||||| || |||||||||||||||||||| || ||||||||||
Sbjct 350 ACATGTGCACTGGACTGCTAGTATCTGCTTATGCTTATTTGTCTGCGGTTGGGTTGCTCT 409
Query 560 ACTTACCAGTCTCTACTTTCTCCCTCATCTTGGCCTCACAGTTGGCCTTCACTGCCTTTT 619
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 410 ACTTACCAGTCTCTACTTTCTCCCTCATCTTGGCCTCGCAGTTGGCCTTCACTGCTTTTT 469
Query 620 TCTCATATTTCCTTAACTCGCAAAAGTTCACTCCTTTGATAGTCAGTTCTTTGCTTCTCC 679
||||||||||||||||||||||||||||||||||||| || |||| ||||||| ||||||
Sbjct 470 TCTCATATTTCCTTAACTCGCAAAAGTTCACTCCTTTCATCGTCAATTCTTTGTTTCTCC 529
Query 680 TCACTGTATCCTCTGCTCTTCTTGTGGTCAACACTGATTCAGAAAACTCAACTAA-TGTA 738
||||||| |||||||||||||| ||||||||||||||||||||||||||| | || ||||
Sbjct 530 TCACTGTTTCCTCTGCTCTTCTCGTGGTCAACACTGATTCAGAAAACTCAGC-AACTGTA 588
Query 739 TCTAGAGTACAGTATGTGATCGGGTTCATATGTACCATCGGTGCTTCCGCTGGGATTGGA 798
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 589 TCTAGAGTACAATATGTGATCGGGTTCATATGTACCATTGGTGCTTCTGCTGGGATTGGA 648
Query 799 CTGTTACTATCTCTGATACAAATGCTCTTCAGGAAAGTTTTCACGAAGCATACATCCTCA 858
||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 649 CTGCTACTATCTCTGATACAACTGCTCTTCAGGAAAGTTTTCACGAATCATACATCGTCG 708
Query 859 GCAGTCACGGACTTGGCCATTTACCAGTCTCTAGTTGCGAGTTGTGTAGTTCTCATAGGA 918
||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 709 GCAGTCATGGACTTGGCCATTTACCAGTCTCTCGTTGCAAGTTGTGTGGTTCTCATAGGA 768
Query 919 CTTTTTGCAAGTGGAGAGTGGGAAACTTTGCCAAGTGAGATGAGAAACTACAAACTCGGG 978
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 769 CTTTTTGCAAGTGGAGAGTGGGAAACTTTGCCAAGTGAGATGAGAAACTACAAACTGGGG 828
Query 979 AAAGTGTCATATGTTTTGACTTTAG-CCTCGGCAGCTATTTCCTGGCAAGTCTACACTCT 1037
|||||||||||| | |||||||| | |||| |||||||||||||||||||| ||||||||
Sbjct 829 AAAGTGTCATATATCTTGACTTT-GTCCTCAGCAGCTATTTCCTGGCAAGTATACACTCT 887
Query 1038 TGGTCTTGTGGGATTGATCTTCGAGTCATCCTCTGTGTTCTCCAATTCCATAACAGCTGT 1097
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 888 TGGTCTCGTGGGATTGATCTTCGAGTCATCCTCTGTGTTCTCCAATTCCATTACAGCTGT 947
Query 1098 GGGATTGCCTATAGTTCCAGTTGCGGCAGTGATAGTTTTCCATGATA-GAATGGACGCAT 1156
||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||
Sbjct 948 GGGATTGCCTATAGTTCCAGTTGTAGCAGTGATAGTTTTCCACGATAAGA-TGGACGCAT 1006
Query 1157 CAAAAATCTTCTCCATTATTTTAGCTATCTGCGGCTTCCTTTCATTCGTCTATCAGCACT 1216
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1007 CAAAAATCTTCTCCATCATTTTAGCTATCTGGGGCTTCCTTTCATTTGTCTATCAGCACT 1066
Query 1217 ACCTCGACGAAAAGAA-GTTGAATACTAGCCACACAAGTGCTGTAGGAGATCTTCATCTA 1275
||||||||||||| || |||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 1067 ACCTCGACGAAAA-AATGTTGAAGACTAGCCACACAAGTGCTGTAGAAGATCTTCACCTA 1125
Query 1276 CCTGTTGAGGAAGGTCACACAAACATACAAAGTGTGTGATCAAAGCATAT 1325
||||||||||||||||||||||||||||||| | | |||||| ||||||
Sbjct 1126 CCTGTTGAGGAAGGTCACACAAACATACAAACT-TATGATCAT-GCATAT 1173
> Ahg890380 jgi|Araly1|890380|Al_scaffold_0007_2366
Length=1182
Score = 1094 bits (592), Expect = 0.0
Identities = 1001/1196 (84%), Gaps = 37/1196 (3%)
Strand=Plus/Plus
Query 142 ATGGACAGATCTCAAGAACACTATGCCAATGGTGACCAGAACTTAGAAGCAAACCTTATA 201
||||| ||| ||||||||| ||||| ||||| ||| |||||| ||||||||||||| | |
Sbjct 1 ATGGAAAGAACTCAAGAACTCTATGTCAATGATGATCAGAACATAGAAGCAAACCTAACA 60
Query 202 GATCATGAGG---TG-GTA--A-C-TGAATCATC--ATCATCAG-CTGTGCCTCAAACCG 250
| ||| |||| || || | | |||| ||| ||| || | |||| |||| || ||
Sbjct 61 GGTCAGGAGGAAATGAATACCACCATGAA-AATCGAATCTTC-GTCTGTTCCTC-AATCG 117
Query 251 -AGAACTATAA-AAGGTGGCTTCGTGTCTCCATATACGTAATCTTTGTCCTCT-TTTGCC 307
|||| ||||| || ||||||||| | | ||| || || |||||||||| | ||||
Sbjct 118 AAGAATTATAAGAA-ATGGCTTCGTATTTTCATTTATGTGTTCTTTGTCCT-TGCCTGCC 175
Query 308 -AGCCACTAGCTACAATTCTGGGTAGATTGTACTATGAAAATGGAGGAAATAGCACATAT 366
|| |||| |||||||| |||| ||| |||||||||||||||| || || || ||||
Sbjct 176 AAG-CACTTTCTACAATTTTGGGCAGAGTGTACTATGAAAATGGTGGGAAGAGTACAT-G 233
Query 367 G-TGGTAACACTTCTTCAACTCATTGGCTTCCCTGTACTGGTTCTGTTCCGCTTCTTTTC 425
| ||| ||||||| | ||||| || ||||||||||| ||| |||| ||||||||||||||
Sbjct 234 GATGGGAACACTTGTCCAACTAATCGGCTTCCCTGTTCTGTTTCTCTTCCGCTTCTTTTC 293
Query 426 TCGAATCAGGCAA-CCCAAATCAACAGATACAAATTTCAGTCAGTCCCCTTCCTTCACCA 484
||||||| || |||||||||||||| || ||| ||| ||| | |||||| |||||
Sbjct 294 CCGAATCA-AAAATTCCAAATCAACAGATGCAGATTACAGAAAGTTCTCTTCCTACACCA 352
Query 485 CCCTTGCATCGGTTTAC-TTGTGCACTGGACTGCTAGTGTCCGCTTATGCTTATTTGT-C 542
|||| ||| |||||| |||| ||||||||| ||||||| ||| || ||||| ||| |
Sbjct 353 TTCTTGGATCAGTTTACATTGT-TACTGGACTGTTAGTGTCTGCTAATTCTTATATGTCC 411
Query 543 TGCAGTAGGGTTGCTCTACTTACCAGTCTCTACTTTCTCCCTCATCTTGGCCTCACAGTT 602
| | || || || || |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 412 T-CTGTTGGTTTACTATACTTACCTGTTTCTACTTTCTCCCTCATCTTGGCCTCACAATT 470
Query 603 GGCCTTCACTGCCTTTTTCTCATATTTCCTTAACTCGCAAAAGTTCACTCCTTTGATAGT 662
||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| || ||
Sbjct 471 GGCCTTCACTGCCTTCTTCTCATATTTCCTAAACTCGCAGAAGTTCACACCTTTCATTGT 530
Query 663 CAGTTCTTTGCTT-CTCCTCACTGTATCCTCTGCTCTTCTTGTGGTCAACACTGATTCAG 721
| |||| | || ||||||||| | |||||||| || || ||||| ||||||||||| |
Sbjct 531 GAATTCTCT-ATTCCTCCTCACTATTTCCTCTGCCCTCCTCGTGGTAAACACTGATTCGG 589
Query 722 AAAACTCAACTAATGTATCTAGAGTACAGTATGTGATCGGGTTCATATGTACCATCGGTG 781
||| | || | || || ||||||||| | |||||||| ||| ||||||||||||| ||||
Sbjct 590 AAACCACAGCAAAAGTTTCTAGAGTAAAATATGTGATAGGGATCATATGTACCATTGGTG 649
Query 782 CTTCCGCTGGGATTGGACTGTTACTATCTCTGATACAAATGCTCTTCAGGAAAGTTTTCA 841
|||| ||||||||||||||| | ||||||||| ||||| || || ||||||| ||||| |
Sbjct 650 CTTCTGCTGGGATTGGACTGCTGCTATCTCTGGTACAACTGATCCTCAGGAAGGTTTTAA 709
Query 842 CGAAGCATACATCCTCAGCAGTCACGGACTTGGCCATTTACCAGTCTCTAGTTGCGAGTT 901
|||||| |||| |||| | || |||||| ||| | |||||| ||||||||||| || |
Sbjct 710 AGAAGCAAACATTCTCAACGGTTACGGACCTGGTCGCTTACCAATCTCTAGTTGCAAGCT 769
Query 902 GTGTAGTTCTCATAGGACTTTTTGCAAGTGGAGAGTGGGAAACTTTGCCAAGTGAGAT-G 960
|||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| |
Sbjct 770 GTGTGGTTCTCATAGGACTTTTCGCAAGCGGAGAGTGGAAAACTTTAACAAGTGAGATGG 829
Query 961 AGAAACTACAAACTCGGGAAAGTGTCATATGTTTTGACTTTAGCCTCGGCAGCTATTTCC 1020
| ||||||| |||| ||||||| | |||| ||| ||||||| |||||| ||||||||||
Sbjct 830 A-AAACTACCAACTGGGGAAAGCGCCATACGTTCTGACTTTGGCCTCGATAGCTATTTCC 888
Query 1021 TGGCAAGTCTACACTC-TTGGTCTTGTGGGATTGATCTTCGAGTCATCCTCTGTGTTCTC 1079
|||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 889 TGGCAAGTCTACAC-CATTGGTGTTGTGGGACTGATCTTCGAGTCATCCTCTGTGTTCTC 947
Query 1080 CAATTCCATAACAGCTGTGGGATTGCCTATAGTTCCAGTTGCGGCAGTGATAGTTTTCCA 1139
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 CAATTCCATAACAGCTGTGGGATTGCCTATAGTTCCAGTTGTAGCAGTGATAGTTTTCCA 1007
Query 1140 TGATAGAATGGACGCATCAAAAATCTTCTCCATTATTTTAGCTATCTGCGGCTTCCTTTC 1199
|||||||||| |||| ||||| ||||||||||| ||||||||||||| |||||| ||||
Sbjct 1008 TGATAGAATGAACGCGTCAAAGATCTTCTCCATCGTTTTAGCTATCTGGGGCTTCATTTC 1067
Query 1200 ATTCGTCTATCAGCACTACCTCGACGA-AAAGAAGTTGAATACTAGCCACACAAGTGCTG 1258
||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||| |||
Sbjct 1068 ATTTGTCTATCAGCACTACCTCGATGAGAAA-AAGTTGAAGACTAGCCACACAAGTCCTG 1126
Query 1259 TAGGAGATCTTCATCTACCTGTTGAGGAAGGTCACACAAACATACAAAGTGTGTGA 1314
| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1127 TTGGAGATCCTCATCTACCTGTTGAGGAAGGTCACACAAACATACAAAGTGTATGA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5