BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18210.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493046 jgi|Araly1|493046|fgenesh2_kg.7__2479__AT4G18210.1 2335 0.0
Ahg946382 jgi|Araly1|946382|scaffold_702611.1 1321 0.0
> Ahg493046 jgi|Araly1|493046|fgenesh2_kg.7__2479__AT4G18210.1
Length=1486
Score = 2335 bits (1264), Expect = 0.0
Identities = 1414/1488 (95%), Gaps = 4/1488 (0%)
Strand=Plus/Plus
Query 1 AGCAATCACTTGGTAGCATTAT-CAACCAAGAGAATTGATAATAAGATACGTTAGTTCCT 59
|||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||
Sbjct 1 AGCAATCACTTGGTAGCATT-TGCAATCAAGAGAATTAATAATAAGATACGTTAGTTCCT 59
Query 60 CCTTGTCCATCTCCAAGGTGGTGATTCCACATCCACCATGACGGCGGATCAAGAACTACA 119
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 60 CCTTGTCCATCTCCAAGGAGGTGATTCCACATCCACCATGACCGCGGATCAAGAACTACA 119
Query 120 AATCATTGTTCGGCAGGGAAAAGAACCAAATCCAACAGTTCAAGATGAAAGAAATTCAGT 179
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 AGTCATCGTTCAGCAGGGAAAAGAACCAAATCCAACAGTTCAAGATGAAAGAAATTCGGT 179
Query 180 CAGTAGCAGCCAAGCAGAAGTATCTCACTCTAACACATACAAACGGTGGCTCAGGGTGAC 239
||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||| |
Sbjct 180 CAGTAGCAGCCAAACAGAAGTATCTCGCTCTAACACGTACAAACGGTGGCTCCGGGTGTC 239
Query 240 TTTATATACATTCTTTGTCATTTCAGGCCAAACAGTTGCTACAATTTTGGGCAGAGTATA 299
| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TCTCTATACATTTTTTGTCATTTCAGGCCAAACAGTTGCTACAATTTTGGGCAGACTATA 299
Query 300 CTATGACAACGGAGGAAACAGTAAATGGCTAGCAACGGTAGTTCAACTTGTTGGCTTTCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTATGACAACGGAGGAAACAGTAAATGGCTAGCAACGGTAGTTCAACTTGTTGGCTTTCC 359
Query 360 TGTGCTACTTCCATATTATATCTTGTCATTTAAAACACATGCAACAACTGATAGAGATGG 419
||| ||||||||||||||| || ||||| | |||||||||||||||||| ||||||||||
Sbjct 360 TGTTCTACTTCCATATTATCTCATGTCAATCAAAACACATGCAACAACTCATAGAGATGG 419
Query 420 AAAAAGAACCTCACCTAGGAACCGTGTATTGGTTTACGTAGTGCTTGGACTTCTTGTAGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAAAAGAACCTCACCTAGGAACCGTGTATTGGTTTACGTAGTGCTTGGACTTCTTGTAGG 479
Query 480 AGCAGATTGCTATCTGTACTCCATTGGACTTCTTTACTTACCCGTTTCTACCTATTCCCT 539
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 480 AGCAGATTGCTATCTGTACTCCATCGGACTTCTTTACTTGCCCGTTTCTACATATTCCCT 539
Query 540 GATCTGTGCATCTCAGTTAGCCTTCAATGCTTTCTTCTCTTATTTTCTTAACTCACAAAA 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 GATCTGTGCATCTCAGTTAGCCTTCAATGCTTTCTTCTCTTATTTTCTCAACTCACAAAA 599
Query 600 ACTTACCCCTATCATTTTAAATTCTCTTTTCCTCCTAACTATATCTTCCACCCTACTTGC 659
||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 ACTAACTCCTATCATTTTGAATTCTCTTTTTCTCCTAACTATATCTTCCACCCTACTTGC 659
Query 660 ATTCAATAATGAGGAGACAGACTCCACAAAAGTTACAAAAGGAGAGTATGTCAAAGGTTT 719
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTTCAATAATGAGGAGTCAAATTCCACAAAAGTTACAAAAGGAGAGTATGTCAAAGGTTT 719
Query 720 CATATGCACCGTTGCTGCGTCTGCTGGTTATGGTCTAGTCTTATCCCTACAACAGCTAGC 779
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 720 CATATGCACTGTTGCTGCGTCTGCTGGGTATGGCCTAGTCTTATCCCTACAACAGCTAGC 779
Query 780 CTTTCTAAAAGTCCTAAAGAAGCAAAATTTCTCAGAAGTTATGGATATGATAATCTACGT 839
||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 780 CTTCCTTAAAGTCCTAAAGAGGCAAACTTTCTCAGAAGTTATGGATATGATAATCTACGT 839
Query 840 GAGTCTAGTGGCCAGTTGTGTTAGCGTGGTGGGGCTTTTTGCTAGCAGTGAGTGGAAAAC 899
|||||||||||||||| ||||||| |||||||||||||||||||| || || ||||||||
Sbjct 840 GAGTCTAGTGGCCAGTGGTGTTAGTGTGGTGGGGCTTTTTGCTAGTAGCGAATGGAAAAC 899
Query 900 TTTGAGCAGTGAAATGGATAACTACAAACATGGGAAGGTATCCTACATTATGAACCTAGT 959
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 900 TTTGAGCAGTGAAATGGAAAACTACAAACCTGGGAAGGTATCCTACATTATGAACCTAGT 959
Query 960 GTGGACAGCTGTTACCTGGCAGGTATTCTCCATCGGTGGCACAGGACTGATCTTCGAGCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGGACAGCTGTTACCTGGCAGGTATTCTCCATCGGTGGCACAGGACTGATCTTCGAGCT 1019
Query 1020 CTCCTCTCTATTCTCAAATGCAATAAGCGTTTTGGGACTCCCAGTGGTTCCTATCTTGGC 1079
|||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||
Sbjct 1020 TTCCTCTCTATTCTCAAATGCAATAAGCGTTTTAGGACTCCCCGTGGTTCCCATCCTGGC 1079
Query 1080 TGTAATCATTTTCCATGACAAAATGAATGGGTTAAAGGTGATTTCTATGATCCTAGCTAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTAATCATTTTCCATGACAAAATGAATGGGTTAAAGGTGATTTCTATGATCCTAGCTAT 1139
Query 1140 TTGGGGTTTCACTTCCTATGTCTACCAACAATATCTTGATGACAAAAACTTGAAGAAAAA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTGGGGTTTCACTTCCTATGTCTACCAACAATATCTTGATGACAAAAACTTGAAGAAAAG 1199
Query 1200 TCATGAAATCACAACAACAGAATCCCCTGACCCACCAGAAGCAGAAGAGTCAACTTGGCA 1259
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 TCATGGAATCACAACAACAGAATCCCCTGACCCACCAGAAGCAGAAGAGTCAAGTTGGCA 1259
Query 1260 ATCAAAATAAGCTGATATTTTGAAAGATGCTGTCCCGCAGTTTACAGACTCAATCAATCT 1319
|||||||||| ||||| |||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 1260 ATCAAAATAACCTGAT-TTTTGAAAGATGGTGTCCTGCAGTTTACACACTCAATCAATCT 1318
Query 1320 AGTTAAGTAAACTTACTTTACTTATCGGCCTGGAGGCATCCTACATTGAAGAATACACAA 1379
|||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1319 GGTTAAG-AAACTTACTTTACTTATCGACCTGGAGGCATCCTACAATGAAGAATACACAA 1377
Query 1380 TACATTTTTGATGCAACTAATGTAAAGTCTCAGCTTGAAATTTTTTGCATCATTGTAACA 1439
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1378 TACATTTTTGATGCAACTAATGTGAAGTCTCAGCTTGAAATTTTTTGCATCAATGTAACA 1437
Query 1440 GGAAGTAGATTTCATTTAAATAAGTAGTGAATGACTTTGGTTTAGTTT 1487
| ||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1438 GAAAGTAGATTTCATTTAAATAAATACTGAATGACTCTGGTTTAGTTT 1485
> Ahg946382 jgi|Araly1|946382|scaffold_702611.1
Length=1075
Score = 1321 bits (715), Expect = 0.0
Identities = 929/1031 (90%), Gaps = 19/1031 (2%)
Strand=Plus/Plus
Query 265 GGCCAAACAGTTGCTACAATTTTGGGCAGAGTATACTATGACAACGGAGGAAACAGTAAA 324
|||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||
Sbjct 51 GGCCAATCAGTTGCTACAATTCTGGGCAGACTATACTATGACAATGGAGGAAACAGCAAA 110
Query 325 TGGCTAGCAACGGTAGTTCAACTTGTTGGCTTTCCTGTGCTACTTCCATATTATATCTTG 384
||||||||||| |||||||| |||| ||||||||| | ||||||||||||||| |||||
Sbjct 111 TGGCTAGCAACAGTAGTTCAGGTTGTAGGCTTTCCTATTCTACTTCCATATTATCTCTTG 170
Query 385 TCATTTAAAACACATGCAACAACTGATAGAGATGGAAAAAGAACCTCACCTAGGAACCGT 444
||| | ||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||
Sbjct 171 TCAGTCAAAACACATACAACAACTCATAGAGATGGCAAAATAACCTCACTTAGGAACCGT 230
Query 445 GTATTGGTTTACGTAGTGCTTGGACTTCTTGTAGGAGCAGATTGCTATCTGTACTCCATT 504
| |||||||||| ||||||||||||||||||||| ||||| |||||| || ||||| ||
Sbjct 231 GCATTGGTTTACATAGTGCTTGGACTTCTTGTAGTAGCAGCTTGCTACCTATACTCTATC 290
Query 505 GGACTTCTTTACTTACCCGTTTCTA-CCTATTCCCTGATCTGTGCATCTCAGTTAGCCTT 563
||||| || ||| |||| ||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 291 GGACTGCTATACCTACCTGTTTCTACCCT-TTCCCTGATCTGTGCATCACAGTTAGCCTT 349
Query 564 CAATGCTTTCTTCTCTTATTTTCTTAACTCACAAAAACTTACCCCTATCATTTTAAATTC 623
|| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||
Sbjct 350 CACCGCTTTCTTCTCTTATTTACTCAACTCACAAAAACTTACTCCTATCATTTTGAATTC 409
Query 624 TCTTTTCCTCCTAACTATATCTTCCACCCTACTTGCATTCAATAATGAGGAGA-CAGACT 682
|||||||||||| |||||||||||||||||||||||||| |||| |||||| | || | |
Sbjct 410 TCTTTTCCTCCTCACTATATCTTCCACCCTACTTGCATTTAATAGTGAGGA-ATCAAATT 468
Query 683 CCACAAAA-GTTACAAAAGGAGAGTATGTCAAAGGTTTCATATGCACCGTTGCTGCGTCT 741
||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 469 CCA-AAAAGGTTACAAAAGAAGAGTATGTCAAAGGTTTCATATGCACCGTTGGTGCATCT 527
Query 742 GCTGGTTATGGTCTAGTCTTATCCCTACAACAGCTAGCCTTTC-TAAAAGTCCTAAAGAA 800
||||||| ||||||| ||||||||||||||||||||||||| | | ||||| |||||||
Sbjct 528 GCTGGTTTTGGTCTACTCTTATCCCTACAACAGCTAGCCTTCCGT-AAAGTTTTAAAGAA 586
Query 801 GCAAAATTTCTCAGAAGTTATGGATATGATAATCTACGTGAGTCTAGTGGCCAGTTGTGT 860
||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 587 GCAAACTTTCTCAGAAGTTATGGATCTGATAATTTACATGAGTCTAGTGGCCAGTTGTGT 646
Query 861 TAGCGTGGTGGGGCTTTTTGCTAGC-AGTGAGTGGAAAACTTTGAGCAGTGAAATGGATA 919
|||| ||||||| |||||||||| | || ||||||||||||||||||| ||||||||| |
Sbjct 647 TAGCCTGGTGGGTCTTTTTGCTA-CTAGCGAGTGGAAAACTTTGAGCAATGAAATGGAAA 705
Query 920 ACTACAAACATGGGAAGGTATCCTACATTATGAACCTAGTGTGGACAGCTGTTACCTGGC 979
||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 706 ACTACAAACTTGGGAAGGTATCCTATGTCATGAACCTAGTGTGGACAGCTGTTACCTGGC 765
Query 980 AGGTATTCTCCATCGGTGGCACAGGACTGATCTTCGAGCTCTCCTCTCTATTCTCAAATG 1039
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 766 AGGTATTCTCCATTGGTGGCACAGGACTGATCTTCGAGCTTTCCTCCCTATTCTCAAATG 825
Query 1040 CAATAAGCGTTTTGGGACTCCCAGTGGTTCCTATC-TTGGCTGTAATCATTTTCCATGAC 1098
||||||||| |||||||||||| |||||||| ||| ||| || | |||||||||||||||
Sbjct 826 CAATAAGCGCTTTGGGACTCCCCGTGGTTCCCATCCTTG-CTATCATCATTTTCCATGAC 884
Query 1099 AAAATGAATGGGTTAAAGGTGATTTCTATGATCCTAGCTATTTGGGGTTTCACT-TCCTA 1157
|||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 885 AAAATGAACGGGTTAAAGGTGATTTCTATGATCCTAGCTATTTGGGGATTCA-TATCCTA 943
Query 1158 TGTCTACCAACAATATCTTGATGACA-AAAACTTGAAGAAAAATCATGAAATCACAACAA 1216
||||||||||||||||||| |||| | ||||||||||||||| ||||| |||| ||||||
Sbjct 944 TGTCTACCAACAATATCTTAATGA-AGAAAACTTGAAGAAAAGTCATGGAATCCCAACAA 1002
Query 1217 CAGAATCCCCTGACCCACCAGAAGCAGAAGAGTCAACTTG-GCAATCAAAATAAGCTGAT 1275
||||||||||||||||||| |||||||||| ||||| | | ||||||||||||||||| |
Sbjct 1003 CAGAATCCCCTGACCCACCTGAAGCAGAAGGGTCAAGT-GAGCAATCAAAATAAGCTGTT 1061
Query 1276 ATTTTGAAAGA 1286
|||| |||||
Sbjct 1062 ATTTC-AAAGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5