BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18220.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946382 jgi|Araly1|946382|scaffold_702611.1 1646 0.0
Ahg493046 jgi|Araly1|493046|fgenesh2_kg.7__2479__AT4G18210.1 1358 0.0
> Ahg946382 jgi|Araly1|946382|scaffold_702611.1
Length=1075
Score = 1646 bits (891), Expect = 0.0
Identities = 988/1036 (95%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGGGGATCAAGAAGTACAAGTCATTGGCCAATCAGTTGCTACAATTCTGGGCAGA 60
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAAGGGGGATCACGAACTACAAGTCATTGGCCAATCAGTTGCTACAATTCTGGGCAGA 80
Query 61 CTATACTATGAAAATGGAGGAAACAGCAAATGGCTAGCAACGGTAGTTCAGCTTGTAGGC 120
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 81 CTATACTATGACAATGGAGGAAACAGCAAATGGCTAGCAACAGTAGTTCAGGTTGTAGGC 140
Query 121 TTTCCTATTCTACTTCCATATCATCTCTTGTCAGTCAAAACACATACAACAACTCAGAGA 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 141 TTTCCTATTCTACTTCCATATTATCTCTTGTCAGTCAAAACACATACAACAACTCATAGA 200
Query 181 GATGGCAAATTAACCTCACTTAGGAACCGTGCATTAGTTTACATAGTGCTTGGACTTCTT 240
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 201 GATGGCAAAATAACCTCACTTAGGAACCGTGCATTGGTTTACATAGTGCTTGGACTTCTT 260
Query 241 GTAGGAGCAGCTTGCTACCTATATTCCATTGGACTGCTTTACCTACCTGTTTCTACCCTT 300
|||| |||||||||||||||||| || || |||||||| |||||||||||||||||||||
Sbjct 261 GTAGTAGCAGCTTGCTACCTATACTCTATCGGACTGCTATACCTACCTGTTTCTACCCTT 320
Query 301 TCCCTGATCTGTGCATCACAGTTAGCCTTCACCGCTTTCTTCTCTTATTTACTCAACTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TCCCTGATCTGTGCATCACAGTTAGCCTTCACCGCTTTCTTCTCTTATTTACTCAACTCA 380
Query 361 CAAAAACTTACTCCTATCATTTTGAATTCTCTTTTCCTCCTCACTATATCTTCCACCCTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CAAAAACTTACTCCTATCATTTTGAATTCTCTTTTCCTCCTCACTATATCTTCCACCCTA 440
Query 421 CTTGCATTTAATAACGAGGAATCAGATTCCAAAAAAGTTACAAAAGGAGAGTATGTCAAA 480
||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||
Sbjct 441 CTTGCATTTAATAGTGAGGAATCAAATTCCAAAAAGGTTACAAAAGAAGAGTATGTCAAA 500
Query 481 GGTTTCGTATGCACCGTTGGTGCATCTGCTGGGTTTGGTCTACTCTTATCCCTACAACAG 540
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 501 GGTTTCATATGCACCGTTGGTGCATCTGCTGGTTTTGGTCTACTCTTATCCCTACAACAG 560
Query 541 CTAGCCTTTCGTAAAGTTTTAAAGAAGCAAACTTTCTCAGAAGTTATAAATATGATAATC 600
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 561 CTAGCCTTCCGTAAAGTTTTAAAGAAGCAAACTTTCTCAGAAGTTATGGATCTGATAATT 620
Query 601 TACATGAGTCTAGTGGCCAGTTGTGTTAGCGTGGTGGGGCTTTTTGCTAGTAGCGAGTGG 660
|||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 621 TACATGAGTCTAGTGGCCAGTTGTGTTAGCCTGGTGGGTCTTTTTGCTACTAGCGAGTGG 680
Query 661 AAAACTTTGAGCAGTGAAATGGAAAACTACAAACTTGGGAAGGTATCCTATGTCATGAAC 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAAACTTTGAGCAATGAAATGGAAAACTACAAACTTGGGAAGGTATCCTATGTCATGAAC 740
Query 721 CTAGTGTGGACAGCTGTTACCTGGCAGGTATTCTCCATCGGTTGCACAGGACTGATCTTC 780
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 741 CTAGTGTGGACAGCTGTTACCTGGCAGGTATTCTCCATTGGTGGCACAGGACTGATCTTC 800
Query 781 GAGCTTTCCTCCCTATTCTCAAATGCAATAAGCGCTTTGGGACTCCCCGTGGTTCCTATC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 801 GAGCTTTCCTCCCTATTCTCAAATGCAATAAGCGCTTTGGGACTCCCCGTGGTTCCCATC 860
Query 841 CTGGCTGTCATCATTTTCCATGACAAAATGAACGGCTTAAAGGTGATTTCTATGATTCTA 900
|| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 861 CTTGCTATCATCATTTTCCATGACAAAATGAACGGGTTAAAGGTGATTTCTATGATCCTA 920
Query 901 GCTATTTGGGGTTTCGTATCCTATGTCTACCAACAATATCTTGATGAA-ACAAACTTGAA 959
||||||||||| ||| |||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 921 GCTATTTGGGGATTCATATCCTATGTCTACCAACAATATCTTAATGAAGA-AAACTTGAA 979
Query 960 GAAAAGTAATGAAATACCAACAACAGAATCCCCTGACCGACCAGAAGCAGAAGGGTCAAG 1019
||||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 980 GAAAAGTCATGGAATCCCAACAACAGAATCCCCTGACCCACCTGAAGCAGAAGGGTCAAG 1039
Query 1020 TGAGCAATCAAAATAA 1035
||||||||||||||||
Sbjct 1040 TGAGCAATCAAAATAA 1055
> Ahg493046 jgi|Araly1|493046|fgenesh2_kg.7__2479__AT4G18210.1
Length=1486
Score = 1358 bits (735), Expect = 0.0
Identities = 920/1010 (91%), Gaps = 10/1010 (1%)
Strand=Plus/Plus
Query 31 GGCCAATCAGTTGCTACAATTCTGGGCAGACTATACTATGAAAATGGAGGAAACAGCAAA 90
|||||| |||||||||||||| ||||||||||||||||||| || ||||||||||| |||
Sbjct 265 GGCCAAACAGTTGCTACAATTTTGGGCAGACTATACTATGACAACGGAGGAAACAGTAAA 324
Query 91 TGGCTAGCAACGGTAGTTCAGCTTGTAGGCTTTCCTATTCTACTTCCATATCATCTCTTG 150
|||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||| ||
Sbjct 325 TGGCTAGCAACGGTAGTTCAACTTGTTGGCTTTCCTGTTCTACTTCCATATTATCTCATG 384
Query 151 TCAGTCAAAACACATACAACAACTCAGAGAGATGGCAAATTAACCTCACTTAGGAACCGT 210
||| ||||||||||| |||||||||| |||||||| ||| |||||||| ||||||||||
Sbjct 385 TCAATCAAAACACATGCAACAACTCATAGAGATGGAAAAAGAACCTCACCTAGGAACCGT 444
Query 211 GCATTAGTTTACATAGTGCTTGGACTTCTTGTAGGAGCAGCTTGCTACCTATATTCCATT 270
| ||| |||||| ||||||||||||||||||||||||||| |||||| || || |||||
Sbjct 445 GTATTGGTTTACGTAGTGCTTGGACTTCTTGTAGGAGCAGATTGCTATCTGTACTCCATC 504
Query 271 GGACTGCTTTACCTACCTGTTTCTACCCT-TTCCCTGATCTGTGCATCACAGTTAGCCTT 329
||||| |||||| | || ||||||| | | |||||||||||||||||| |||||||||||
Sbjct 505 GGACTTCTTTACTTGCCCGTTTCTA-CATATTCCCTGATCTGTGCATCTCAGTTAGCCTT 563
Query 330 CACCGCTTTCTTCTCTTATTTACTCAACTCACAAAAACTTACTCCTATCATTTTGAATTC 389
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 564 CAATGCTTTCTTCTCTTATTTTCTCAACTCACAAAAACTAACTCCTATCATTTTGAATTC 623
Query 390 TCTTTTCCTCCTCACTATATCTTCCACCCTCCTTGCATTTAATAACGAGGAATCAGATTC 449
|||||| ||||| ||||||||||||||||| ||||| || ||||| ||||| ||| ||||
Sbjct 624 TCTTTTTCTCCTAACTATATCTTCCACCCTACTTGCGTTCAATAATGAGGAGTCAAATTC 683
Query 450 CAAAAAAGTTACAAAAGGAGAGTATGTCAAAGGTTTCGTATGCACCGTTGGTGCATCTGC 509
|| |||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||
Sbjct 684 CACAAAAGTTACAAAAGGAGAGTATGTCAAAGGTTTCATATGCACTGTTGCTGCGTCTGC 743
Query 510 TGGGTTTGGTCTACTCTTATCCCTACAACAGCTAGCCTTTCGTAAAGTTTTAAAGAAGCA 569
||||| ||| ||| ||||||||||||||||||||||||| | |||||| |||||| |||
Sbjct 744 TGGGTATGGCCTAGTCTTATCCCTACAACAGCTAGCCTTCCTTAAAGTCCTAAAGAGGCA 803
Query 570 AACTTTCTCAGAAGTTATAAATATGATAATCTACATGAGTCTAGTGGCCAGTTGTGTTAG 629
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 804 AACTTTCTCAGAAGTTATGGATATGATAATCTACGTGAGTCTAGTGGCCAGTGGTGTTAG 863
Query 630 CGTGGTGGGGCTTTTTGCTAGTAGCGAGTGGAAAACTTTGAGCAGTGAAATGGAAAACTA 689
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 864 TGTGGTGGGGCTTTTTGCTAGTAGCGAATGGAAAACTTTGAGCAGTGAAATGGAAAACTA 923
Query 690 CAAACTTGGGAAGGTATCCTATGTCATGAACCTAGTGTGGACAGCTGTTACCTGGCAGGT 749
||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 924 CAAACCTGGGAAGGTATCCTACATTATGAACCTAGTGTGGACAGCTGTTACCTGGCAGGT 983
Query 750 ATTCTCCATCGGTTGCACAGGACTGATCTTCGAGCTTTCCTCCCTATTCTCAAATGCAAT 809
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 984 ATTCTCCATCGGTGGCACAGGACTGATCTTCGAGCTTTCCTCTCTATTCTCAAATGCAAT 1043
Query 810 AAGCGCTTTGGGACTCCCCGTGGTTCCTATCCTGGCTGTCATCATTTTCCATGACAAAAT 869
||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1044 AAGCGTTTTAGGACTCCCCGTGGTTCCCATCCTGGCTGTAATCATTTTCCATGACAAAAT 1103
Query 870 GAACGGCTTAAAGGTGATTTCTATGATTCTAGCTATTTGGGGTTTCG-TATCCTATGTCT 928
||| || |||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 1104 GAATGGGTTAAAGGTGATTTCTATGATCCTAGCTATTTGGGGTTTCACT-TCCTATGTCT 1162
Query 929 ACCAACAATATCTTGATGA-AACAAACTTGAAGAAAAGTAATGAAAT-ACCAACAACAGA 986
||||||||||||||||||| || |||||||||||||||| ||| ||| || |||||||||
Sbjct 1163 ACCAACAATATCTTGATGACAA-AAACTTGAAGAAAAGTCATGGAATCAC-AACAACAGA 1220
Query 987 ATCCCCTGACCGACCAGAAGCAGAAGGGTCAAGT-GAGCAATCAAAATAA 1035
||||||||||| |||||||||||||| ||||||| | |||||||||||||
Sbjct 1221 ATCCCCTGACCCACCAGAAGCAGAAGAGTCAAGTTG-GCAATCAAAATAA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5