BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G18230.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493043 jgi|Araly1|493043|fgenesh2_kg.7__2476__AT4G18230.1 1478 0.0
> Ahg493043 jgi|Araly1|493043|fgenesh2_kg.7__2476__AT4G18230.1
Length=941
Score = 1478 bits (800), Expect = 0.0
Identities = 900/947 (95%), Gaps = 12/947 (1%)
Strand=Plus/Plus
Query 1 AATTCTCTAATCCTTTACGTTCCCGTCACCGCCGGGATTCTCCGTCGCCGATCTCAAAAG 60
||||| |||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 1 AATTCCCTAATCCTTTTCGTTCCCGTCACCGCCGGGATTCTCCGTCGCCG-----AAGAG 55
Query 61 -GAAG-TA-C--GATCATGGAGGAAGGTTGCAACTGTGTTTACTCAAGGATGGCCTCAAA 115
| | || | |||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 56 TGTTGTTATCAGGATCATGGAGGAAGGTTGCAGCTGCATTTACTCAAGGATGGCCTCAAG 115
Query 116 ATTCAGCATTGGTTTATTGATTATTTTGGCGATCGTTCTTCTAATGGTTCGTGTACTGTA 175
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 116 ATTCAGCATTGGTTTATTGATTATTTTGGCAATCGTTCTTCTTATGGTTCGTGTACTGTA 175
Query 176 TGTTATATACCGATGTGGCAAACCACTTCCAAAAGGAGCTTCACAGTCTTTTACTACTCT 235
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 176 TGTTATATACCGGTGTGGCAAACCTCTTCCAAAAGGAGCTTCACAGTCTTTTACTACTCT 235
Query 236 TATTGTTCTTGGTTCTGGGGGACACACAGCAGAGATGTTGAGTCTCCTCTCTGTTTTGCG 295
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 236 TATTGTTCTTGGTTCTGGGGGACACACGGCTGAGATGTTGAGTCTCCTCTCTGTTTTGCG 295
Query 296 GAAGGATAGATTTACACCAAGGTTTTACATTGCTGCTGCTACAGATAACATGAGTCTCCA 355
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 296 CAAGGACAGATTTACACCAAGGTTTTACATTGCTGCAGCTACTGATAACATGAGTCTCCA 355
Query 356 GAAAGCTCGTAGTTTTGAAGATTCTCTAGCTGAGAAGCCTGCTGTTAAGGAAGCATCATC 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 GAAAGCTCGTAGTTTTGAAGATTCTGTAGCTGAGAAGCCTGCTGTTAAGGAAGCATCATC 415
Query 416 ACAGTTCATGCAAATTTACCGGAGTCGTGAAGTTGGTCAGTCTTATGTGACTTCTGTTTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACAGTTCATGCAAATTTACCGGAGTCGTGAAGTTGGTCAGTCTTATGTGACTTCTGTTTG 475
Query 476 GACTACCATTGTTGCTATTCTTCACGCTCTGTGGCTAATGATCCGGATCAGACCACAAGT 535
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GACTACCATTGTTGCTATTGTTCATGCTCTGTGGCTAATGATCCGGATCAGACCACAAGT 535
Query 536 GATTCTTTGCAATGGTCCTGGGACCTGTATTCCTCTGTGTGTGATCGCCTTTT-TATTCA 594
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 536 GATTCTTTGCAATGGTCCTGGGACCTGTATTCCTCTGTGTGTGATCGC-TTTCGTATTCA 594
Query 595 AGGTGCTGGGAATTAGATGGTCATCAATCTTTTATGTTGAGAGTGTAGCAAGAGTGAAAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AGGTGCTGGGAATTAGATGGTCATCAATCTTTTATGTTGAGAGTGTAGCAAGAGTGAAAA 654
Query 655 AGCTCTCATTAAGTGGATTGTTGCTTTACAAGTTGAGAATAGCTGATCAATTCTTTGTTC 714
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 655 AGCTCTCATTAAGTGGATTGTTACTTTACAAGTTGAGGATAGCTGATCAATTCTTTGTTC 714
Query 715 AATGGCCACAACTGCATAAGAAGTATCCTCGGGCTCACTATGTTGGGTGCCTGATGTAAG 774
||||||||||| |||| || || || ||||||||||||||||||||||||||||||||||
Sbjct 715 AATGGCCACAATTGCAAAATAAATACCCTCGGGCTCACTATGTTGGGTGCCTGATGTAAG 774
Query 775 CTGATTGGAACTCTACTTACACCTAGATATATTACAAAAACTTAGAAAGCTACATAGTGT 834
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTGATTGGAACTCTCCTTATACCTAGATATATTACAAAAACTTAGAAAGCTACATAGTGT 834
Query 835 ACACCTTCTCTTTATATGCAGGATTGAGTTTTAAACAATGAATTTTTGTAATCAGCTGTT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACACCTTCTCTTTATATGCAGGATTGAGTTTTAAACAATGAATTTTTGTAATCAGCTGTT 894
Query 895 TTGACTTTGTTAATGACTTAATGCTATTTCAGTGAGCTTATAATGTG 941
||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 895 CTGACTTTGTTAATGACTTAATACCATTTCAGTGAGCTTATAATGTG 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5